data_2DAG # _entry.id 2DAG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DAG pdb_00002dag 10.2210/pdb2dag/pdb RCSB RCSB025183 ? ? WWPDB D_1000025183 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsi002005673.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DAG _pdbx_database_status.recvd_initial_deposition_date 2005-12-14 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhao, C.' 1 'Kigawa, T.' 2 'Tomizawa, T.' 3 'Koshiba, S.' 4 'Inoue, M.' 5 'Yokoyama, S.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title 'Solution Structure of the First UBA Domain in the Human Ubiquitin Specific Protease 5 (Isopeptidase 5)' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhao, C.' 1 ? primary 'Kigawa, T.' 2 ? primary 'Tomizawa, T.' 3 ? primary 'Koshiba, S.' 4 ? primary 'Inoue, M.' 5 ? primary 'Yokoyama, S.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Ubiquitin carboxyl-terminal hydrolase 5' _entity.formula_weight 7500.245 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 3.1.2.15 _entity.pdbx_mutation ? _entity.pdbx_fragment 'UBA domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Ubiquitin thiolesterase 5, Ubiquitin-specific processing protease 5, Deubiquitinating enzyme 5, Isopeptidase T' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSSGSSGLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSGPGSSGPSSG _entity_poly.pdbx_seq_one_letter_code_can GSSGSSGLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSGPGSSGPSSG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsi002005673.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 LEU n 1 9 ASP n 1 10 GLU n 1 11 SER n 1 12 VAL n 1 13 ILE n 1 14 ILE n 1 15 GLN n 1 16 LEU n 1 17 VAL n 1 18 GLU n 1 19 MET n 1 20 GLY n 1 21 PHE n 1 22 PRO n 1 23 MET n 1 24 ASP n 1 25 ALA n 1 26 CYS n 1 27 ARG n 1 28 LYS n 1 29 ALA n 1 30 VAL n 1 31 TYR n 1 32 TYR n 1 33 THR n 1 34 GLY n 1 35 ASN n 1 36 SER n 1 37 GLY n 1 38 ALA n 1 39 GLU n 1 40 ALA n 1 41 ALA n 1 42 MET n 1 43 ASN n 1 44 TRP n 1 45 VAL n 1 46 MET n 1 47 SER n 1 48 HIS n 1 49 MET n 1 50 ASP n 1 51 ASP n 1 52 PRO n 1 53 ASP n 1 54 PHE n 1 55 ALA n 1 56 ASN n 1 57 PRO n 1 58 LEU n 1 59 ILE n 1 60 LEU n 1 61 PRO n 1 62 GLY n 1 63 SER n 1 64 SER n 1 65 GLY n 1 66 PRO n 1 67 GLY n 1 68 SER n 1 69 SER n 1 70 GLY n 1 71 PRO n 1 72 SER n 1 73 SER n 1 74 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene USP5 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050613-08 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code UBP5_HUMAN _struct_ref.pdbx_db_accession P45974 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 655 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DAG _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 68 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P45974 _struct_ref_seq.db_align_beg 655 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 715 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 68 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DAG GLY A 1 ? UNP P45974 ? ? 'cloning artifact' 1 1 1 2DAG SER A 2 ? UNP P45974 ? ? 'cloning artifact' 2 2 1 2DAG SER A 3 ? UNP P45974 ? ? 'cloning artifact' 3 3 1 2DAG GLY A 4 ? UNP P45974 ? ? 'cloning artifact' 4 4 1 2DAG SER A 5 ? UNP P45974 ? ? 'cloning artifact' 5 5 1 2DAG SER A 6 ? UNP P45974 ? ? 'cloning artifact' 6 6 1 2DAG GLY A 7 ? UNP P45974 ? ? 'cloning artifact' 7 7 1 2DAG SER A 69 ? UNP P45974 ? ? 'cloning artifact' 69 8 1 2DAG GLY A 70 ? UNP P45974 ? ? 'cloning artifact' 70 9 1 2DAG PRO A 71 ? UNP P45974 ? ? 'cloning artifact' 71 10 1 2DAG SER A 72 ? UNP P45974 ? ? 'cloning artifact' 72 11 1 2DAG SER A 73 ? UNP P45974 ? ? 'cloning artifact' 73 12 1 2DAG GLY A 74 ? UNP P45974 ? ? 'cloning artifact' 74 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296.0 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.05mM UBA domain U-15N, 13C; 20mM d-Tris-HCl(pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DAG _pdbx_nmr_refine.method 'torsion angle dynamics, restrainted molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DAG _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function,structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DAG _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 2.6 Bruker 1 processing NMRPipe 20030801 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B. A.' 3 'data analysis' KUJIRA 0.9321 'Kobayashi, N.' 4 'structure solution' CYANA 1.0.8 'Guntert, P.' 5 refinement CYANA 1.0.8 'Guntert, P.' 6 # _exptl.entry_id 2DAG _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DAG _struct.title 'Solution Structure of the First UBA Domain in the Human Ubiquitin Specific Protease 5 (Isopeptidase 5)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DAG _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;isopeptidase T, Ubiquitin Specific Protease 5 (USP 5), UBA domain, structural genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, HYDROLASE ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 9 ? GLY A 20 ? ASP A 9 GLY A 20 1 ? 12 HELX_P HELX_P2 2 PRO A 22 ? GLY A 34 ? PRO A 22 GLY A 34 1 ? 13 HELX_P HELX_P3 3 GLY A 37 ? MET A 49 ? GLY A 37 MET A 49 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 2DAG _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DAG _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 ASP 9 9 9 ASP ASP A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 ILE 14 14 14 ILE ILE A . n A 1 15 GLN 15 15 15 GLN GLN A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 MET 19 19 19 MET MET A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 PHE 21 21 21 PHE PHE A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 MET 23 23 23 MET MET A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 CYS 26 26 26 CYS CYS A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 TYR 31 31 31 TYR TYR A . n A 1 32 TYR 32 32 32 TYR TYR A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 ASN 35 35 35 ASN ASN A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 MET 42 42 42 MET MET A . n A 1 43 ASN 43 43 43 ASN ASN A . n A 1 44 TRP 44 44 44 TRP TRP A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 MET 46 46 46 MET MET A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 HIS 48 48 48 HIS HIS A . n A 1 49 MET 49 49 49 MET MET A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 PRO 52 52 52 PRO PRO A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 PHE 54 54 54 PHE PHE A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 ASN 56 56 56 ASN ASN A . n A 1 57 PRO 57 57 57 PRO PRO A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 PRO 61 61 61 PRO PRO A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 PRO 66 66 66 PRO PRO A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 SER 68 68 68 SER SER A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 PRO 71 71 71 PRO PRO A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 SER 73 73 73 SER SER A . n A 1 74 GLY 74 74 74 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-06-14 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A ALA 38 ? ? H A MET 42 ? ? 1.51 2 1 O A HIS 48 ? ? H A ASP 51 ? ? 1.51 3 1 O A MET 42 ? ? H A MET 46 ? ? 1.57 4 1 O A GLU 10 ? ? H A ILE 14 ? ? 1.59 5 2 O A ALA 38 ? ? H A MET 42 ? ? 1.50 6 2 O A VAL 45 ? ? H A MET 49 ? ? 1.53 7 2 O A MET 42 ? ? H A MET 46 ? ? 1.54 8 2 O A MET 23 ? ? H A ARG 27 ? ? 1.58 9 3 O A VAL 30 ? ? H A ASN 35 ? ? 1.50 10 3 O A HIS 48 ? ? H A ASP 51 ? ? 1.54 11 3 O A ALA 38 ? ? H A MET 42 ? ? 1.55 12 3 O A GLY 37 ? ? H A ALA 41 ? ? 1.56 13 3 O A MET 23 ? ? H A ARG 27 ? ? 1.59 14 4 O A VAL 45 ? ? H A MET 49 ? ? 1.49 15 4 O A VAL 30 ? ? H A ASN 35 ? ? 1.51 16 4 O A MET 42 ? ? H A MET 46 ? ? 1.54 17 4 O A MET 23 ? ? H A ARG 27 ? ? 1.54 18 4 O A SER 47 ? ? H A ASP 50 ? ? 1.55 19 4 O A ALA 38 ? ? H A MET 42 ? ? 1.55 20 5 O A VAL 30 ? ? H A ASN 35 ? ? 1.51 21 5 O A MET 42 ? ? H A MET 46 ? ? 1.55 22 5 O A SER 47 ? ? H A ASP 50 ? ? 1.56 23 5 O A ALA 38 ? ? H A MET 42 ? ? 1.58 24 5 O A VAL 45 ? ? H A MET 49 ? ? 1.60 25 6 O A ALA 38 ? ? H A MET 42 ? ? 1.50 26 6 O A ALA 29 ? ? H A THR 33 ? ? 1.53 27 6 O A HIS 48 ? ? H A ASP 51 ? ? 1.54 28 6 O A GLU 10 ? ? H A ILE 14 ? ? 1.57 29 6 O A MET 42 ? ? H A MET 46 ? ? 1.57 30 7 O A VAL 30 ? ? H A ASN 35 ? ? 1.51 31 7 O A ALA 38 ? ? H A MET 42 ? ? 1.53 32 7 O A VAL 45 ? ? H A MET 49 ? ? 1.56 33 7 O A HIS 48 ? ? H A ASP 51 ? ? 1.57 34 8 O A VAL 30 ? ? H A ASN 35 ? ? 1.50 35 8 O A ALA 38 ? ? H A MET 42 ? ? 1.52 36 8 O A HIS 48 ? ? H A ASP 51 ? ? 1.54 37 8 O A MET 42 ? ? H A MET 46 ? ? 1.58 38 8 O A ALA 29 ? ? H A THR 33 ? ? 1.58 39 8 O A VAL 45 ? ? H A MET 49 ? ? 1.59 40 9 O A TRP 44 ? ? H A HIS 48 ? ? 1.50 41 9 O A VAL 30 ? ? H A ASN 35 ? ? 1.50 42 9 O A ALA 38 ? ? H A MET 42 ? ? 1.52 43 9 O A MET 23 ? ? H A ARG 27 ? ? 1.55 44 9 O A VAL 45 ? ? H A MET 49 ? ? 1.60 45 10 O A SER 47 ? ? H A ASP 50 ? ? 1.53 46 10 O A MET 42 ? ? H A MET 46 ? ? 1.53 47 10 O A ALA 38 ? ? H A MET 42 ? ? 1.53 48 10 O A GLY 37 ? ? H A ALA 41 ? ? 1.54 49 10 O A VAL 45 ? ? H A MET 49 ? ? 1.54 50 10 O A ALA 29 ? ? H A THR 33 ? ? 1.59 51 11 O A VAL 45 ? ? H A MET 49 ? ? 1.51 52 11 O A MET 42 ? ? H A MET 46 ? ? 1.54 53 11 O A ALA 38 ? ? H A MET 42 ? ? 1.58 54 11 O A MET 23 ? ? H A ARG 27 ? ? 1.59 55 12 O A VAL 30 ? ? H A ASN 35 ? ? 1.49 56 12 O A VAL 45 ? ? H A MET 49 ? ? 1.51 57 12 O A SER 47 ? ? H A ASP 50 ? ? 1.53 58 12 O A MET 42 ? ? H A MET 46 ? ? 1.55 59 12 O A GLY 7 ? ? HD21 A ASN 35 ? ? 1.55 60 12 O A MET 23 ? ? H A ARG 27 ? ? 1.55 61 12 O A ALA 38 ? ? H A MET 42 ? ? 1.58 62 13 O A ALA 38 ? ? H A MET 42 ? ? 1.54 63 13 O A VAL 30 ? ? H A ASN 35 ? ? 1.54 64 13 O A GLU 10 ? ? H A ILE 14 ? ? 1.56 65 13 O A MET 23 ? ? H A ARG 27 ? ? 1.57 66 13 O A TYR 31 ? ? H A GLY 34 ? ? 1.58 67 13 O A ILE 14 ? ? H A GLU 18 ? ? 1.60 68 14 O A VAL 30 ? ? H A ASN 35 ? ? 1.50 69 14 O A ALA 38 ? ? H A MET 42 ? ? 1.54 70 14 O A MET 23 ? ? H A ARG 27 ? ? 1.59 71 14 O A HIS 48 ? ? H A ASP 51 ? ? 1.60 72 15 O A ALA 38 ? ? H A MET 42 ? ? 1.51 73 15 O A MET 23 ? ? H A ARG 27 ? ? 1.53 74 15 O A MET 42 ? ? H A MET 46 ? ? 1.54 75 15 HZ3 A LYS 28 ? ? OD1 A ASN 56 ? ? 1.56 76 15 O A VAL 45 ? ? H A MET 49 ? ? 1.57 77 15 O A ASP 24 ? ? H A LYS 28 ? ? 1.60 78 16 O A GLY 37 ? ? H A ALA 41 ? ? 1.52 79 16 O A ALA 29 ? ? H A THR 33 ? ? 1.55 80 16 O A HIS 48 ? ? H A ASP 51 ? ? 1.56 81 16 O A MET 23 ? ? H A ARG 27 ? ? 1.57 82 16 O A MET 42 ? ? H A MET 46 ? ? 1.57 83 16 O A GLU 10 ? ? H A ILE 14 ? ? 1.58 84 16 O A ALA 38 ? ? H A MET 42 ? ? 1.59 85 17 O A MET 23 ? ? H A ARG 27 ? ? 1.55 86 17 O A VAL 30 ? ? H A ASN 35 ? ? 1.55 87 17 O A MET 42 ? ? H A MET 46 ? ? 1.56 88 17 O A ILE 14 ? ? H A GLU 18 ? ? 1.56 89 17 O A VAL 45 ? ? H A MET 49 ? ? 1.60 90 18 O A ALA 38 ? ? H A MET 42 ? ? 1.51 91 19 O A VAL 30 ? ? H A ASN 35 ? ? 1.49 92 19 O A HIS 48 ? ? H A ASP 51 ? ? 1.54 93 19 O A GLU 10 ? ? H A ILE 14 ? ? 1.57 94 19 O A MET 42 ? ? H A MET 46 ? ? 1.57 95 19 O A MET 23 ? ? H A ARG 27 ? ? 1.58 96 20 O A VAL 30 ? ? H A ASN 35 ? ? 1.49 97 20 O A HIS 48 ? ? H A ASP 51 ? ? 1.50 98 20 O A ALA 38 ? ? H A MET 42 ? ? 1.52 99 20 O A MET 23 ? ? H A ARG 27 ? ? 1.56 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 3 ? ? -59.74 92.81 2 1 SER A 5 ? ? 69.97 -61.93 3 1 SER A 6 ? ? 64.68 157.23 4 1 LEU A 8 ? ? 55.70 167.94 5 1 TYR A 31 ? ? -48.33 -70.89 6 1 ASN A 35 ? ? 50.86 98.20 7 1 SER A 36 ? ? -148.39 46.96 8 1 ASN A 56 ? ? -40.55 155.96 9 1 SER A 69 ? ? -129.22 -60.97 10 2 SER A 3 ? ? -173.33 138.78 11 2 TYR A 31 ? ? -50.99 -71.05 12 2 ASN A 35 ? ? 47.52 94.39 13 2 SER A 36 ? ? -143.79 54.79 14 2 ASP A 50 ? ? -88.85 44.31 15 2 ILE A 59 ? ? 58.18 109.61 16 2 SER A 63 ? ? -154.53 85.30 17 2 SER A 64 ? ? -65.12 95.01 18 2 SER A 68 ? ? -156.84 -61.52 19 2 SER A 69 ? ? -49.06 153.25 20 2 SER A 72 ? ? -177.68 80.80 21 2 SER A 73 ? ? 62.15 88.95 22 3 ALA A 29 ? ? -54.16 -70.16 23 3 HIS A 48 ? ? -91.95 -62.49 24 3 ASN A 56 ? ? -40.52 157.36 25 3 SER A 63 ? ? -150.47 -61.69 26 3 SER A 68 ? ? 60.13 162.31 27 4 SER A 2 ? ? -174.40 119.52 28 4 SER A 3 ? ? 71.30 -60.95 29 4 SER A 5 ? ? -103.79 -62.57 30 4 SER A 6 ? ? 51.85 91.45 31 4 ASN A 35 ? ? 40.24 85.59 32 4 MET A 46 ? ? -37.94 -30.67 33 4 ASP A 50 ? ? -90.71 42.43 34 4 ASN A 56 ? ? -40.97 157.33 35 4 PRO A 57 ? ? -75.08 -169.09 36 4 LEU A 60 ? ? -46.39 160.38 37 4 SER A 72 ? ? -55.27 105.55 38 4 SER A 73 ? ? 61.89 151.70 39 5 SER A 5 ? ? -142.34 -58.47 40 5 SER A 68 ? ? 64.91 134.15 41 5 SER A 72 ? ? -130.18 -58.92 42 6 SER A 2 ? ? -56.00 103.30 43 6 SER A 3 ? ? 54.78 101.86 44 6 SER A 5 ? ? 61.18 112.43 45 6 ALA A 29 ? ? -55.03 -70.67 46 6 ASN A 35 ? ? 40.70 89.60 47 6 ILE A 59 ? ? 62.05 140.28 48 6 LEU A 60 ? ? -45.27 161.24 49 6 SER A 72 ? ? -144.77 -58.47 50 7 SER A 5 ? ? -170.07 146.60 51 7 SER A 6 ? ? 67.51 131.59 52 7 ASN A 35 ? ? 47.22 87.94 53 7 ASN A 56 ? ? -44.68 157.30 54 7 SER A 64 ? ? -168.13 79.11 55 8 SER A 2 ? ? -168.00 106.09 56 8 SER A 3 ? ? -161.35 90.27 57 8 SER A 5 ? ? 63.52 103.15 58 8 LEU A 8 ? ? 56.07 166.82 59 8 ASN A 35 ? ? 45.75 85.69 60 8 ASN A 56 ? ? -41.09 157.12 61 8 ILE A 59 ? ? -47.15 106.41 62 8 SER A 63 ? ? -176.45 112.91 63 9 SER A 2 ? ? 43.19 88.69 64 9 SER A 36 ? ? -104.73 57.09 65 9 VAL A 45 ? ? -58.40 -72.04 66 9 ILE A 59 ? ? -46.29 151.03 67 9 SER A 63 ? ? -165.18 -50.81 68 9 SER A 64 ? ? 62.53 114.31 69 10 SER A 3 ? ? 61.86 101.80 70 10 SER A 5 ? ? 59.01 94.36 71 10 ALA A 29 ? ? -53.97 -71.12 72 10 ASN A 35 ? ? 45.20 91.58 73 10 SER A 47 ? ? -92.13 -62.96 74 10 ASP A 50 ? ? -92.58 39.28 75 10 SER A 63 ? ? -174.12 -58.91 76 10 SER A 64 ? ? 65.51 168.35 77 11 TYR A 31 ? ? -47.03 -71.16 78 11 ASN A 35 ? ? 49.02 89.61 79 11 ASN A 56 ? ? -41.33 156.08 80 11 ILE A 59 ? ? 39.21 89.00 81 11 LEU A 60 ? ? -41.31 160.23 82 11 SER A 72 ? ? -46.74 150.80 83 11 SER A 73 ? ? 74.24 -70.84 84 12 SER A 6 ? ? 57.50 90.03 85 12 ASN A 35 ? ? 45.05 84.20 86 12 SER A 47 ? ? -92.03 -63.88 87 12 ASP A 50 ? ? -94.99 40.21 88 12 ASN A 56 ? ? -40.45 157.28 89 12 PRO A 57 ? ? -75.06 -166.79 90 13 SER A 5 ? ? -178.93 117.71 91 13 SER A 6 ? ? 68.31 97.44 92 13 ASN A 35 ? ? 39.40 53.93 93 13 SER A 36 ? ? -88.76 41.25 94 13 ASN A 56 ? ? -45.99 155.53 95 13 LEU A 60 ? ? -42.60 155.53 96 13 SER A 63 ? ? -65.99 81.86 97 13 SER A 69 ? ? 62.67 135.53 98 13 SER A 73 ? ? 64.37 153.45 99 14 SER A 3 ? ? 65.22 100.39 100 14 ASN A 35 ? ? 46.76 88.29 101 14 HIS A 48 ? ? -92.11 -63.08 102 14 MET A 49 ? ? -39.40 -28.91 103 14 ILE A 59 ? ? -41.78 107.31 104 14 SER A 63 ? ? 61.08 155.21 105 14 SER A 69 ? ? -166.02 -58.47 106 14 SER A 72 ? ? -139.01 -58.44 107 15 SER A 3 ? ? 67.43 -69.91 108 15 SER A 5 ? ? -173.75 145.83 109 15 SER A 6 ? ? 48.52 94.13 110 15 LEU A 8 ? ? 53.69 173.41 111 15 ALA A 29 ? ? -52.00 -71.24 112 15 ASN A 35 ? ? 44.08 91.91 113 15 ASN A 56 ? ? -40.46 157.31 114 15 SER A 63 ? ? -176.22 104.86 115 15 SER A 64 ? ? -39.50 133.62 116 16 SER A 2 ? ? -173.33 130.69 117 16 ASN A 35 ? ? 56.18 103.16 118 16 ASN A 56 ? ? -40.98 155.64 119 16 SER A 63 ? ? 67.71 -70.19 120 16 SER A 64 ? ? -54.77 95.12 121 16 SER A 68 ? ? 64.20 126.16 122 16 SER A 72 ? ? 60.51 165.91 123 17 SER A 6 ? ? 55.73 98.26 124 17 ALA A 29 ? ? -55.99 -70.25 125 17 TYR A 31 ? ? -53.78 -70.99 126 17 ASN A 35 ? ? 53.51 101.25 127 17 SER A 36 ? ? -146.69 45.27 128 17 SER A 47 ? ? -91.67 -62.20 129 17 ASN A 56 ? ? -46.32 170.42 130 17 PRO A 57 ? ? -75.01 -166.75 131 17 ILE A 59 ? ? 56.99 107.33 132 17 SER A 69 ? ? -171.42 112.97 133 17 SER A 72 ? ? -151.27 84.13 134 18 SER A 2 ? ? -177.76 -58.10 135 18 SER A 3 ? ? 41.92 83.09 136 18 TYR A 31 ? ? -44.32 -71.02 137 18 ASN A 35 ? ? 52.02 99.46 138 18 SER A 36 ? ? -147.03 41.18 139 18 VAL A 45 ? ? -59.89 -71.35 140 18 MET A 49 ? ? -39.21 -28.90 141 18 ASN A 56 ? ? -40.64 156.74 142 19 SER A 2 ? ? 64.01 131.93 143 19 SER A 6 ? ? -55.67 171.14 144 19 ILE A 59 ? ? 71.13 137.80 145 19 LEU A 60 ? ? -47.67 154.96 146 19 SER A 63 ? ? 53.37 172.66 147 19 SER A 64 ? ? 58.47 96.93 148 19 SER A 69 ? ? 56.78 170.94 149 19 SER A 73 ? ? -133.91 -59.66 150 20 SER A 3 ? ? 74.59 -59.42 151 20 SER A 5 ? ? -176.57 79.73 152 20 ASN A 35 ? ? 40.52 70.17 153 20 SER A 36 ? ? -112.08 52.80 154 20 MET A 49 ? ? -39.89 -28.55 155 20 ASN A 56 ? ? -42.60 157.26 156 20 ILE A 59 ? ? 59.88 154.06 157 20 SER A 63 ? ? 60.99 107.54 158 20 SER A 64 ? ? -41.17 101.19 159 20 SER A 68 ? ? -177.98 137.92 #