data_2DAM # _entry.id 2DAM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DAM pdb_00002dam 10.2210/pdb2dam/pdb RCSB RCSB025189 ? ? WWPDB D_1000025189 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk002000866.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DAM _pdbx_database_status.recvd_initial_deposition_date 2005-12-14 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhao, C.' 1 'Kigawa, T.' 2 'Yoneyama, M.' 3 'Koshiba, S.' 4 'Inoue, M.' 5 'Yokoyama, S.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title 'Solution Structure of the Novel Identified UBA-like Domain in the N-terminal of Human ETEA Protein' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhao, C.' 1 ? primary 'Kigawa, T.' 2 ? primary 'Yoneyama, M.' 3 ? primary 'Koshiba, S.' 4 ? primary 'Inoue, M.' 5 ? primary 'Yokoyama, S.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'ETEA protein' _entity.formula_weight 7364.762 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'UBA-like domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'KIAA0887 protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSSGSSGAPEERDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQEGSGPSSG _entity_poly.pdbx_seq_one_letter_code_can GSSGSSGAPEERDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQEGSGPSSG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk002000866.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 ALA n 1 9 PRO n 1 10 GLU n 1 11 GLU n 1 12 ARG n 1 13 ASP n 1 14 LEU n 1 15 THR n 1 16 GLN n 1 17 GLU n 1 18 GLN n 1 19 THR n 1 20 GLU n 1 21 LYS n 1 22 LEU n 1 23 LEU n 1 24 GLN n 1 25 PHE n 1 26 GLN n 1 27 ASP n 1 28 LEU n 1 29 THR n 1 30 GLY n 1 31 ILE n 1 32 GLU n 1 33 SER n 1 34 MET n 1 35 ASP n 1 36 GLN n 1 37 CYS n 1 38 ARG n 1 39 HIS n 1 40 THR n 1 41 LEU n 1 42 GLU n 1 43 GLN n 1 44 HIS n 1 45 ASN n 1 46 TRP n 1 47 ASN n 1 48 ILE n 1 49 GLU n 1 50 ALA n 1 51 ALA n 1 52 VAL n 1 53 GLN n 1 54 ASP n 1 55 ARG n 1 56 LEU n 1 57 ASN n 1 58 GLU n 1 59 GLN n 1 60 GLU n 1 61 GLY n 1 62 SER n 1 63 GLY n 1 64 PRO n 1 65 SER n 1 66 SER n 1 67 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene KIAA0887 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050815-22 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code UBXD8_HUMAN _struct_ref.pdbx_db_accession Q96CS3 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 3 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DAM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 61 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q96CS3 _struct_ref_seq.db_align_beg 3 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 56 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 61 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DAM GLY A 1 ? UNP Q96CS3 ? ? 'cloning artifact' 1 1 1 2DAM SER A 2 ? UNP Q96CS3 ? ? 'cloning artifact' 2 2 1 2DAM SER A 3 ? UNP Q96CS3 ? ? 'cloning artifact' 3 3 1 2DAM GLY A 4 ? UNP Q96CS3 ? ? 'cloning artifact' 4 4 1 2DAM SER A 5 ? UNP Q96CS3 ? ? 'cloning artifact' 5 5 1 2DAM SER A 6 ? UNP Q96CS3 ? ? 'cloning artifact' 6 6 1 2DAM GLY A 7 ? UNP Q96CS3 ? ? 'cloning artifact' 7 7 1 2DAM SER A 62 ? UNP Q96CS3 ? ? 'cloning artifact' 62 8 1 2DAM GLY A 63 ? UNP Q96CS3 ? ? 'cloning artifact' 63 9 1 2DAM PRO A 64 ? UNP Q96CS3 ? ? 'cloning artifact' 64 10 1 2DAM SER A 65 ? UNP Q96CS3 ? ? 'cloning artifact' 65 11 1 2DAM SER A 66 ? UNP Q96CS3 ? ? 'cloning artifact' 66 12 1 2DAM GLY A 67 ? UNP Q96CS3 ? ? 'cloning artifact' 67 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298.0 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.02mM UBA-like domain U-15N, 13C; 20mM d-Tris-HCl (pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DAM _pdbx_nmr_refine.method 'torsion angle dynamics, restrainted molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DAM _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DAM _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 2.6 Bruker 1 processing NMRPipe 20030801 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B. A.' 3 'data analysis' KUJIRA 0.9321 'Kobayashi, N.' 4 'structure solution' CYANA 1.0.8 'Guntert, P.' 5 refinement CYANA 1.0.8 'Guntert, P.' 6 # _exptl.entry_id 2DAM _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DAM _struct.title 'Solution Structure of the Novel Identified UBA-like Domain in the N-terminal of Human ETEA Protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DAM _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;ETEA protein, KIAA0887, UBA-like domain, structural genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, UNKNOWN FUNCTION ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 15 ? GLY A 30 ? THR A 15 GLY A 30 1 ? 16 HELX_P HELX_P2 2 SER A 33 ? ASN A 45 ? SER A 33 ASN A 45 1 ? 13 HELX_P HELX_P3 3 ASN A 47 ? GLU A 58 ? ASN A 47 GLU A 58 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 2DAM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DAM _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 ARG 12 12 12 ARG ARG A . n A 1 13 ASP 13 13 13 ASP ASP A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 GLN 16 16 16 GLN GLN A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 GLU 20 20 20 GLU GLU A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 GLN 24 24 24 GLN GLN A . n A 1 25 PHE 25 25 25 PHE PHE A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 THR 29 29 29 THR THR A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 MET 34 34 34 MET MET A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 GLN 36 36 36 GLN GLN A . n A 1 37 CYS 37 37 37 CYS CYS A . n A 1 38 ARG 38 38 38 ARG ARG A . n A 1 39 HIS 39 39 39 HIS HIS A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 GLN 43 43 43 GLN GLN A . n A 1 44 HIS 44 44 44 HIS HIS A . n A 1 45 ASN 45 45 45 ASN ASN A . n A 1 46 TRP 46 46 46 TRP TRP A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 ILE 48 48 48 ILE ILE A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 GLN 53 53 53 GLN GLN A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 ARG 55 55 55 ARG ARG A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 ASN 57 57 57 ASN ASN A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 GLN 59 59 59 GLN GLN A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 GLY 63 63 63 GLY GLY A . n A 1 64 PRO 64 64 64 PRO PRO A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 GLY 67 67 67 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-06-14 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A ARG 38 ? ? H A GLU 42 ? ? 1.53 2 1 O A ILE 48 ? ? H A VAL 52 ? ? 1.53 3 1 O A GLN 53 ? ? H A ASN 57 ? ? 1.57 4 1 O A ASN 47 ? ? H A ALA 51 ? ? 1.60 5 2 O A ILE 48 ? ? H A VAL 52 ? ? 1.52 6 2 O A ARG 38 ? ? H A GLU 42 ? ? 1.57 7 2 O A LEU 22 ? ? H A GLN 26 ? ? 1.58 8 2 O A ASN 47 ? ? H A ALA 51 ? ? 1.59 9 3 O A ILE 48 ? ? H A VAL 52 ? ? 1.51 10 3 O A GLN 53 ? ? H A ASN 57 ? ? 1.58 11 3 O A ASN 47 ? ? H A ALA 51 ? ? 1.58 12 3 O A ARG 38 ? ? H A GLU 42 ? ? 1.59 13 4 O A ILE 48 ? ? H A VAL 52 ? ? 1.53 14 4 O A GLN 53 ? ? H A ASN 57 ? ? 1.56 15 4 O A ARG 38 ? ? H A GLU 42 ? ? 1.58 16 4 O A ASN 47 ? ? H A ALA 51 ? ? 1.59 17 5 O A ILE 48 ? ? H A VAL 52 ? ? 1.51 18 5 O A GLN 53 ? ? H A ASN 57 ? ? 1.52 19 5 O A ARG 38 ? ? H A GLU 42 ? ? 1.55 20 5 O A ASN 47 ? ? H A ALA 51 ? ? 1.57 21 6 O A ILE 48 ? ? H A VAL 52 ? ? 1.51 22 6 O A ARG 38 ? ? H A GLU 42 ? ? 1.56 23 6 O A ASN 47 ? ? H A ALA 51 ? ? 1.57 24 6 O A VAL 52 ? ? H A LEU 56 ? ? 1.59 25 7 O A ILE 48 ? ? H A VAL 52 ? ? 1.51 26 7 O A GLN 53 ? ? H A ASN 57 ? ? 1.53 27 7 O A PHE 25 ? ? HG1 A THR 29 ? ? 1.54 28 7 O A ARG 38 ? ? H A GLU 42 ? ? 1.57 29 7 O A ASN 47 ? ? H A ALA 51 ? ? 1.58 30 7 O A LEU 22 ? ? H A GLN 26 ? ? 1.59 31 8 O A ILE 48 ? ? H A VAL 52 ? ? 1.52 32 8 O A ARG 38 ? ? H A GLU 42 ? ? 1.53 33 8 O A ASN 47 ? ? H A ALA 51 ? ? 1.57 34 9 O A ARG 38 ? ? H A GLU 42 ? ? 1.54 35 9 O A ILE 48 ? ? H A VAL 52 ? ? 1.56 36 9 O A ASN 47 ? ? H A ALA 51 ? ? 1.59 37 10 O A LEU 22 ? ? H A GLN 26 ? ? 1.52 38 10 O A ILE 48 ? ? H A VAL 52 ? ? 1.52 39 10 O A ARG 38 ? ? H A GLU 42 ? ? 1.53 40 10 O A ASN 47 ? ? H A ALA 51 ? ? 1.57 41 11 O A ILE 48 ? ? H A VAL 52 ? ? 1.51 42 11 O A ARG 38 ? ? H A GLU 42 ? ? 1.56 43 11 O A ASN 47 ? ? H A ALA 51 ? ? 1.58 44 11 O A PHE 25 ? ? HG1 A THR 29 ? ? 1.59 45 12 O A ILE 48 ? ? H A VAL 52 ? ? 1.51 46 12 O A ASN 47 ? ? H A ALA 51 ? ? 1.57 47 12 O A ARG 38 ? ? H A GLU 42 ? ? 1.58 48 13 O A ILE 48 ? ? H A VAL 52 ? ? 1.52 49 13 O A ARG 38 ? ? H A GLU 42 ? ? 1.56 50 13 O A PHE 25 ? ? H A THR 29 ? ? 1.58 51 13 O A ASN 47 ? ? H A ALA 51 ? ? 1.59 52 14 O A ILE 48 ? ? H A VAL 52 ? ? 1.53 53 14 O A ARG 38 ? ? H A GLU 42 ? ? 1.56 54 14 O A LEU 22 ? ? H A GLN 26 ? ? 1.57 55 14 O A ASN 47 ? ? H A ALA 51 ? ? 1.59 56 15 O A ILE 48 ? ? H A VAL 52 ? ? 1.52 57 15 O A ARG 38 ? ? H A GLU 42 ? ? 1.54 58 15 O A ASN 47 ? ? H A ALA 51 ? ? 1.57 59 15 O A GLN 53 ? ? H A ASN 57 ? ? 1.58 60 15 O A PHE 25 ? ? H A THR 29 ? ? 1.59 61 16 O A ILE 48 ? ? H A VAL 52 ? ? 1.51 62 16 O A ARG 38 ? ? H A GLU 42 ? ? 1.51 63 16 O A LEU 22 ? ? H A GLN 26 ? ? 1.56 64 16 O A ASN 47 ? ? H A ALA 51 ? ? 1.57 65 16 O A PHE 25 ? ? H A THR 29 ? ? 1.57 66 17 O A ILE 48 ? ? H A VAL 52 ? ? 1.51 67 17 O A ASN 47 ? ? H A ALA 51 ? ? 1.58 68 17 O A GLN 53 ? ? H A ASN 57 ? ? 1.59 69 18 O A ILE 48 ? ? H A VAL 52 ? ? 1.51 70 18 O A GLN 53 ? ? H A ASN 57 ? ? 1.51 71 18 O A ARG 38 ? ? H A GLU 42 ? ? 1.55 72 18 O A PHE 25 ? ? H A THR 29 ? ? 1.55 73 18 O A ASN 47 ? ? H A ALA 51 ? ? 1.55 74 19 O A ILE 48 ? ? H A VAL 52 ? ? 1.51 75 19 O A ARG 38 ? ? H A GLU 42 ? ? 1.55 76 19 O A ASN 47 ? ? H A ALA 51 ? ? 1.56 77 20 O A ILE 48 ? ? H A VAL 52 ? ? 1.52 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 3 ? ? 44.01 85.24 2 1 THR A 29 ? ? -53.61 -71.36 3 1 CYS A 37 ? ? -60.72 -73.58 4 1 HIS A 39 ? ? -53.95 -70.40 5 1 ASN A 45 ? ? 86.38 58.16 6 1 GLN A 59 ? ? 62.07 111.54 7 2 ALA A 8 ? ? -163.74 92.87 8 2 GLU A 10 ? ? -172.66 141.00 9 2 THR A 29 ? ? -57.63 -70.20 10 2 SER A 33 ? ? -65.90 98.95 11 2 CYS A 37 ? ? -66.71 -73.72 12 2 ARG A 38 ? ? -38.73 -34.30 13 2 ASN A 45 ? ? 86.55 58.56 14 2 GLU A 58 ? ? 87.60 -41.22 15 2 SER A 62 ? ? -104.73 -60.82 16 3 SER A 2 ? ? 63.74 156.28 17 3 ALA A 8 ? ? -174.14 92.59 18 3 ASP A 13 ? ? 60.59 163.05 19 3 THR A 29 ? ? -54.47 -71.40 20 3 SER A 33 ? ? -62.86 90.80 21 3 CYS A 37 ? ? -51.83 -73.98 22 3 HIS A 39 ? ? -54.84 -71.94 23 3 LEU A 41 ? ? -62.82 -72.01 24 3 ASN A 45 ? ? 87.70 57.84 25 3 GLU A 58 ? ? 40.42 70.49 26 3 GLN A 59 ? ? -161.91 94.53 27 3 SER A 62 ? ? -172.94 142.81 28 4 SER A 3 ? ? 62.29 135.67 29 4 SER A 6 ? ? 61.58 104.16 30 4 GLU A 10 ? ? 55.26 170.20 31 4 SER A 33 ? ? -62.72 97.03 32 4 CYS A 37 ? ? -66.42 -73.38 33 4 ARG A 38 ? ? -38.64 -35.38 34 4 ASN A 45 ? ? 87.02 58.36 35 4 GLU A 58 ? ? -51.92 106.12 36 4 GLN A 59 ? ? 62.43 150.69 37 4 GLU A 60 ? ? 60.52 163.36 38 4 SER A 65 ? ? 65.12 127.86 39 5 SER A 2 ? ? 43.04 84.91 40 5 SER A 5 ? ? 53.81 96.35 41 5 SER A 6 ? ? -172.93 143.04 42 5 ALA A 8 ? ? 65.83 163.30 43 5 GLU A 11 ? ? -152.76 58.52 44 5 ASP A 13 ? ? 58.20 167.25 45 5 THR A 29 ? ? -52.88 -70.93 46 5 CYS A 37 ? ? -67.75 -73.68 47 5 ASN A 45 ? ? 86.74 57.26 48 5 SER A 62 ? ? 46.48 94.23 49 5 SER A 66 ? ? 66.07 164.39 50 6 SER A 2 ? ? 178.89 102.80 51 6 SER A 3 ? ? -167.07 93.99 52 6 SER A 6 ? ? 63.35 169.43 53 6 ASP A 13 ? ? -41.57 158.91 54 6 THR A 29 ? ? -55.41 -71.16 55 6 SER A 33 ? ? -56.92 100.71 56 6 CYS A 37 ? ? -53.25 -73.80 57 6 ARG A 38 ? ? -39.96 -35.96 58 6 HIS A 39 ? ? -54.41 -70.62 59 6 ASN A 45 ? ? 85.51 58.88 60 6 GLN A 59 ? ? -43.16 159.98 61 6 GLU A 60 ? ? 62.13 134.95 62 6 SER A 66 ? ? -132.36 -58.36 63 7 SER A 5 ? ? 54.17 97.28 64 7 SER A 6 ? ? -145.68 -55.84 65 7 ALA A 8 ? ? 62.72 154.75 66 7 GLU A 10 ? ? 64.54 171.47 67 7 LEU A 14 ? ? -59.69 173.36 68 7 LEU A 28 ? ? -53.10 -73.24 69 7 CYS A 37 ? ? -57.20 -73.77 70 7 ASN A 45 ? ? 87.11 56.27 71 7 GLN A 59 ? ? 55.74 165.87 72 7 SER A 66 ? ? 60.84 105.16 73 8 SER A 3 ? ? -175.95 131.43 74 8 GLU A 10 ? ? 58.48 171.40 75 8 GLU A 11 ? ? 51.10 85.73 76 8 LEU A 28 ? ? -58.49 -74.83 77 8 CYS A 37 ? ? -58.96 -73.81 78 8 LEU A 41 ? ? -90.82 -67.83 79 8 ASN A 45 ? ? 85.54 46.25 80 8 SER A 62 ? ? 41.55 81.12 81 8 SER A 66 ? ? -147.25 -57.21 82 9 SER A 3 ? ? 58.38 165.45 83 9 SER A 5 ? ? -165.10 112.52 84 9 PRO A 9 ? ? -75.03 -90.30 85 9 GLU A 10 ? ? 58.11 169.14 86 9 GLU A 11 ? ? -172.41 131.13 87 9 ASP A 13 ? ? 59.05 164.14 88 9 LEU A 14 ? ? -45.94 169.50 89 9 LEU A 28 ? ? -48.02 -71.78 90 9 THR A 29 ? ? -53.45 -70.64 91 9 CYS A 37 ? ? -69.36 -73.65 92 9 ASN A 45 ? ? 85.25 58.90 93 9 SER A 65 ? ? -160.55 81.43 94 10 SER A 3 ? ? 61.73 166.15 95 10 SER A 5 ? ? -175.44 147.21 96 10 ASP A 13 ? ? -44.39 162.83 97 10 THR A 29 ? ? -58.37 -73.77 98 10 CYS A 37 ? ? -66.72 -73.80 99 10 LEU A 41 ? ? -91.23 -66.15 100 10 ASN A 45 ? ? 88.18 36.99 101 10 SER A 62 ? ? -137.47 -55.24 102 10 SER A 66 ? ? 57.29 97.87 103 11 SER A 5 ? ? -160.45 115.85 104 11 SER A 6 ? ? -177.06 140.16 105 11 GLU A 11 ? ? 58.17 77.45 106 11 LEU A 28 ? ? -61.69 -78.07 107 11 CYS A 37 ? ? -58.64 -73.64 108 11 HIS A 39 ? ? -50.78 -71.08 109 11 ASN A 45 ? ? 85.67 58.28 110 11 GLU A 60 ? ? 68.15 124.65 111 11 SER A 66 ? ? 61.76 165.11 112 12 ARG A 12 ? ? 64.04 168.03 113 12 ASP A 13 ? ? -44.97 165.27 114 12 LEU A 14 ? ? -55.00 -176.27 115 12 THR A 29 ? ? -52.70 -71.27 116 12 CYS A 37 ? ? -65.65 -73.86 117 12 ARG A 38 ? ? -39.41 -33.93 118 12 ASN A 45 ? ? 87.26 57.17 119 12 GLU A 60 ? ? 47.11 88.29 120 12 SER A 65 ? ? 178.99 85.57 121 13 SER A 5 ? ? 71.17 -60.46 122 13 GLU A 10 ? ? 57.35 170.81 123 13 GLU A 11 ? ? 63.93 101.90 124 13 ASP A 13 ? ? -172.52 148.45 125 13 THR A 29 ? ? -62.98 -72.16 126 13 CYS A 37 ? ? -75.62 -74.02 127 13 LEU A 41 ? ? -76.34 -70.53 128 13 ASN A 45 ? ? 88.76 59.89 129 13 GLN A 59 ? ? 69.24 128.39 130 14 SER A 6 ? ? -162.32 -59.88 131 14 GLU A 11 ? ? -39.64 151.47 132 14 ARG A 12 ? ? 62.99 112.51 133 14 ASP A 13 ? ? -142.27 17.09 134 14 LEU A 14 ? ? -39.60 153.55 135 14 CYS A 37 ? ? -61.42 -73.44 136 14 ARG A 38 ? ? -38.73 -33.48 137 14 HIS A 39 ? ? -59.29 -70.12 138 14 LEU A 41 ? ? -71.12 -70.21 139 14 ASN A 45 ? ? 85.34 60.69 140 14 GLN A 59 ? ? -106.09 70.28 141 14 GLU A 60 ? ? -92.58 -63.75 142 15 ALA A 8 ? ? 176.05 93.36 143 15 GLU A 10 ? ? 55.41 169.22 144 15 GLU A 11 ? ? 63.58 157.08 145 15 ARG A 12 ? ? 57.34 101.84 146 15 LEU A 14 ? ? -49.08 163.66 147 15 THR A 29 ? ? -62.71 -76.32 148 15 CYS A 37 ? ? -65.71 -73.79 149 15 LEU A 41 ? ? -91.27 -65.01 150 15 ASN A 45 ? ? 88.04 36.38 151 15 GLU A 58 ? ? 87.74 -40.73 152 15 GLU A 60 ? ? 66.31 95.94 153 16 SER A 3 ? ? -165.50 107.34 154 16 ASP A 13 ? ? 175.00 150.20 155 16 THR A 29 ? ? -63.41 -73.12 156 16 CYS A 37 ? ? -66.68 -73.12 157 16 ARG A 38 ? ? -38.63 -33.48 158 16 LEU A 41 ? ? -91.61 -62.34 159 16 ASN A 45 ? ? 88.15 35.38 160 16 GLN A 59 ? ? 52.91 99.06 161 16 SER A 66 ? ? 53.06 87.57 162 17 SER A 2 ? ? 58.22 161.42 163 17 SER A 5 ? ? -173.14 114.38 164 17 SER A 6 ? ? 58.27 102.40 165 17 GLU A 11 ? ? -172.20 110.11 166 17 LEU A 28 ? ? -58.67 -80.61 167 17 ASN A 45 ? ? 87.04 56.64 168 17 SER A 62 ? ? 178.54 136.57 169 17 SER A 65 ? ? 61.45 178.52 170 18 SER A 2 ? ? 178.50 135.41 171 18 SER A 3 ? ? 56.85 166.55 172 18 THR A 29 ? ? -53.07 -72.36 173 18 SER A 33 ? ? -66.53 93.76 174 18 CYS A 37 ? ? -72.25 -72.75 175 18 ARG A 38 ? ? -38.68 -29.99 176 18 ASN A 45 ? ? 85.82 59.86 177 18 SER A 66 ? ? 62.23 85.83 178 19 SER A 6 ? ? -175.17 141.89 179 19 PRO A 9 ? ? -74.96 -90.21 180 19 GLU A 10 ? ? -172.39 144.06 181 19 LEU A 28 ? ? -58.01 -73.77 182 19 CYS A 37 ? ? -72.51 -73.13 183 19 ARG A 38 ? ? -37.52 -31.91 184 19 ASN A 45 ? ? 87.37 57.94 185 19 ASP A 54 ? ? -39.99 -30.22 186 19 GLU A 58 ? ? 39.00 70.95 187 19 GLN A 59 ? ? 55.09 -178.52 188 19 SER A 65 ? ? -158.44 88.97 189 19 SER A 66 ? ? 63.13 138.44 190 20 SER A 5 ? ? 61.56 105.41 191 20 ALA A 8 ? ? 58.67 163.59 192 20 GLU A 10 ? ? 56.31 170.66 193 20 ASP A 13 ? ? 61.60 160.44 194 20 GLN A 26 ? ? -47.80 -72.56 195 20 LEU A 28 ? ? -60.67 -74.15 196 20 CYS A 37 ? ? -73.98 -73.84 197 20 ARG A 38 ? ? -38.66 -38.75 198 20 ASN A 45 ? ? 86.80 42.67 199 20 GLN A 59 ? ? 54.60 78.31 200 20 GLU A 60 ? ? 68.30 -68.01 201 20 SER A 66 ? ? 59.40 80.43 #