HEADER RNA BINDING PROTEIN 14-DEC-05 2DB1 TITLE SOLUTION STRUCTURE OF THE RNA BINDING DOMAIN IN HETEROGENEOUS NUCLEAR TITLE 2 RIBONUCLEOPROTEIN F HOMOLOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN F; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: HNRNP F; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050425-12; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS RRM DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DB1 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DB1 1 VERSN REVDAT 1 14-JUN-06 2DB1 0 JRNL AUTH C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE RNA BINDING DOMAIN IN JRNL TITL 2 HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN F HOMOLOG JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DB1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000025202. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM D-TRIS-HCL(PH 7.0), 100MM REMARK 210 NACL, 1MM D-DTT, 0.02% NAN3, 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.93191, CYANA 2.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 6 112.48 -34.54 REMARK 500 1 LEU A 31 39.83 -95.66 REMARK 500 1 ASP A 33 -19.03 -49.19 REMARK 500 1 ALA A 57 118.53 -160.13 REMARK 500 1 ARG A 75 38.87 31.49 REMARK 500 1 THR A 91 -26.90 -39.58 REMARK 500 1 SER A 100 -57.12 -134.66 REMARK 500 1 SER A 110 150.23 -44.74 REMARK 500 2 SER A -4 46.85 -83.92 REMARK 500 2 MET A 2 41.09 72.63 REMARK 500 2 GLU A 6 76.90 -65.94 REMARK 500 2 THR A 35 73.18 -110.54 REMARK 500 2 LYS A 98 -30.14 -39.38 REMARK 500 2 SER A 100 -53.84 -123.32 REMARK 500 2 PRO A 102 2.73 -69.77 REMARK 500 2 SER A 106 88.31 -69.82 REMARK 500 3 MET A 2 41.52 -89.82 REMARK 500 3 GLU A 6 98.59 -54.50 REMARK 500 3 LEU A 31 39.34 -97.20 REMARK 500 3 ASP A 33 -19.93 -49.31 REMARK 500 3 ASP A 65 -37.81 -38.01 REMARK 500 3 SER A 100 -57.56 -131.76 REMARK 500 3 PRO A 102 0.30 -69.75 REMARK 500 3 ALA A 105 -63.59 -98.59 REMARK 500 3 SER A 109 98.87 -48.69 REMARK 500 4 MET A 1 88.63 -59.82 REMARK 500 4 MET A 2 -69.94 -99.72 REMARK 500 4 LEU A 3 31.86 -99.57 REMARK 500 4 PRO A 5 -163.67 -69.74 REMARK 500 4 GLU A 9 172.78 -47.60 REMARK 500 4 LEU A 31 41.73 -105.79 REMARK 500 4 THR A 35 72.34 -106.90 REMARK 500 4 GLN A 53 95.50 -66.07 REMARK 500 4 ARG A 75 34.50 33.33 REMARK 500 5 LEU A 3 109.48 -50.36 REMARK 500 5 PRO A 5 -178.17 -69.75 REMARK 500 5 LEU A 31 38.33 -94.91 REMARK 500 5 GLN A 53 97.83 -62.32 REMARK 500 5 ARG A 75 44.88 31.15 REMARK 500 5 PRO A 102 2.83 -69.76 REMARK 500 5 SER A 106 47.08 -82.89 REMARK 500 5 PRO A 108 85.17 -69.79 REMARK 500 6 PRO A 5 98.12 -69.76 REMARK 500 6 LEU A 31 37.50 -91.64 REMARK 500 6 SER A 100 -58.94 -127.27 REMARK 500 6 PRO A 108 89.00 -69.80 REMARK 500 6 SER A 110 159.53 -48.06 REMARK 500 7 SER A -4 42.76 -91.11 REMARK 500 7 SER A -1 93.94 -67.63 REMARK 500 7 PRO A 5 -174.46 -69.75 REMARK 500 REMARK 500 THIS ENTRY HAS 145 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT008001147.1 RELATED DB: TARGETDB DBREF 2DB1 A 1 105 UNP Q9Z2X1 Q9Z2X1_MOUSE 1 105 SEQADV 2DB1 GLY A -6 UNP Q9Z2X1 CLONING ARTIFACT SEQADV 2DB1 SER A -5 UNP Q9Z2X1 CLONING ARTIFACT SEQADV 2DB1 SER A -4 UNP Q9Z2X1 CLONING ARTIFACT SEQADV 2DB1 GLY A -3 UNP Q9Z2X1 CLONING ARTIFACT SEQADV 2DB1 SER A -2 UNP Q9Z2X1 CLONING ARTIFACT SEQADV 2DB1 SER A -1 UNP Q9Z2X1 CLONING ARTIFACT SEQADV 2DB1 GLY A 0 UNP Q9Z2X1 CLONING ARTIFACT SEQADV 2DB1 SER A 106 UNP Q9Z2X1 CLONING ARTIFACT SEQADV 2DB1 GLY A 107 UNP Q9Z2X1 CLONING ARTIFACT SEQADV 2DB1 PRO A 108 UNP Q9Z2X1 CLONING ARTIFACT SEQADV 2DB1 SER A 109 UNP Q9Z2X1 CLONING ARTIFACT SEQADV 2DB1 SER A 110 UNP Q9Z2X1 CLONING ARTIFACT SEQADV 2DB1 GLY A 111 UNP Q9Z2X1 CLONING ARTIFACT SEQRES 1 A 118 GLY SER SER GLY SER SER GLY MET MET LEU GLY PRO GLU SEQRES 2 A 118 GLY GLY GLU GLY TYR VAL VAL LYS LEU ARG GLY LEU PRO SEQRES 3 A 118 TRP SER CYS SER ILE GLU ASP VAL GLN ASN PHE LEU SER SEQRES 4 A 118 ASP CYS THR ILE HIS ASP GLY VAL ALA GLY VAL HIS PHE SEQRES 5 A 118 ILE TYR THR ARG GLU GLY ARG GLN SER GLY GLU ALA PHE SEQRES 6 A 118 VAL GLU LEU GLU SER GLU ASP ASP VAL LYS LEU ALA LEU SEQRES 7 A 118 LYS LYS ASP ARG GLU SER MET GLY HIS ARG TYR ILE GLU SEQRES 8 A 118 VAL PHE LYS SER HIS ARG THR GLU MET ASP TRP VAL LEU SEQRES 9 A 118 LYS HIS SER GLY PRO ASN SER ALA SER GLY PRO SER SER SEQRES 10 A 118 GLY HELIX 1 1 SER A 23 LEU A 31 1 9 HELIX 2 2 ASP A 38 ALA A 41 5 4 HELIX 3 3 SER A 63 LEU A 71 1 9 HELIX 4 4 LYS A 72 ASP A 74 5 3 HELIX 5 5 HIS A 89 HIS A 99 1 11 SHEET 1 A 5 VAL A 43 TYR A 47 0 SHEET 2 A 5 GLN A 53 GLU A 60 -1 O GLU A 56 N ILE A 46 SHEET 3 A 5 VAL A 12 ARG A 16 -1 N LEU A 15 O ALA A 57 SHEET 4 A 5 ARG A 81 SER A 88 -1 O PHE A 86 N LYS A 14 SHEET 5 A 5 GLU A 76 MET A 78 -1 N GLU A 76 O ILE A 83 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1