HEADER PROTEIN BINDING 15-DEC-05 2DB5 TITLE SOLUTION STRUCTURE OF THE FIRST PDZ DOMAIN OF INAD-LIKE PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: INAD-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN; COMPND 5 SYNONYM: INADL PROTEIN, HINADL, PALS1-ASSOCIATED TIGHT JUNCTION COMPND 6 PROTEIN, PROTEIN ASSOCIATED TO TIGHT JUNCTIONS; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: INADL, PATJ; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050302-62; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS PDZ DOMAIN, INAD-LIKE PROTEIN, INADL PROTEIN, HINADL, PALS1- KEYWDS 2 ASSOCIATED TIGHT JUNCTION PROTEIN, PROTEIN ASSOCIATED TO TIGHT KEYWDS 3 JUNCTIONS, INADL, PATJ, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 4 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 5 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.INOUE,C.KUROSAKI,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DB5 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DB5 1 VERSN REVDAT 1 15-JUN-06 2DB5 0 JRNL AUTH K.INOUE,C.KUROSAKI,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FIRST PDZ DOMAIN OF INAD-LIKE JRNL TITL 2 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DB5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000025206. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.37MM U-15N,13C-LABELED REMARK 210 PROTEIN; 20MM D-TRIS-HCL; 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.93191, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH REMARK 210 THE LOWEST ENERGY,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 62 103.34 -40.66 REMARK 500 1 PRO A 63 84.14 -69.84 REMARK 500 1 ASP A 68 -69.25 -108.58 REMARK 500 1 ASP A 70 -67.44 -105.67 REMARK 500 1 LEU A 87 33.83 -92.86 REMARK 500 1 ASP A 88 174.04 -58.31 REMARK 500 1 GLN A 89 -33.75 -36.82 REMARK 500 1 LEU A 99 -34.22 -37.61 REMARK 500 1 GLN A 102 -66.60 -97.99 REMARK 500 1 THR A 103 117.68 -36.60 REMARK 500 1 THR A 118 36.06 35.81 REMARK 500 2 PRO A 34 -175.84 -69.75 REMARK 500 2 LEU A 51 -174.97 -172.36 REMARK 500 2 LYS A 53 148.53 -171.95 REMARK 500 2 ASP A 68 -59.72 -122.59 REMARK 500 2 ARG A 69 -35.05 -38.14 REMARK 500 2 HIS A 84 46.12 70.35 REMARK 500 2 LEU A 87 48.51 -93.52 REMARK 500 2 GLN A 89 -30.57 -36.51 REMARK 500 2 LEU A 99 -37.12 -34.41 REMARK 500 3 SER A 5 -51.07 -126.26 REMARK 500 3 LEU A 8 -51.08 -125.35 REMARK 500 3 ARG A 33 106.89 -46.29 REMARK 500 3 PRO A 34 -170.47 -69.81 REMARK 500 3 SER A 35 -176.25 -61.35 REMARK 500 3 THR A 36 -26.95 -39.45 REMARK 500 3 GLN A 49 36.44 -85.70 REMARK 500 3 ASN A 50 -73.16 -101.39 REMARK 500 3 LEU A 51 105.14 -173.41 REMARK 500 3 VAL A 66 -37.63 -37.00 REMARK 500 3 ARG A 69 -31.19 -35.97 REMARK 500 3 LEU A 73 117.56 -160.64 REMARK 500 3 GLN A 78 99.95 -66.25 REMARK 500 3 THR A 85 109.11 -166.77 REMARK 500 3 LEU A 87 34.58 -90.77 REMARK 500 3 ASP A 88 178.13 -56.04 REMARK 500 3 HIS A 117 -53.00 -125.82 REMARK 500 4 ARG A 24 155.01 -40.26 REMARK 500 4 ASN A 50 -75.13 -52.17 REMARK 500 4 LEU A 51 107.49 -175.04 REMARK 500 4 GLN A 71 35.91 34.74 REMARK 500 4 THR A 85 111.22 -166.10 REMARK 500 4 LEU A 87 49.32 -93.59 REMARK 500 4 GLN A 89 -37.85 -35.67 REMARK 500 4 LEU A 99 -27.63 -38.86 REMARK 500 4 PRO A 115 -179.40 -69.78 REMARK 500 4 THR A 122 128.64 -171.88 REMARK 500 4 PRO A 125 -175.15 -69.77 REMARK 500 4 SER A 127 107.24 -34.74 REMARK 500 5 SER A 5 114.19 -173.74 REMARK 500 REMARK 500 THIS ENTRY HAS 276 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO003006830.1 RELATED DB: TARGETDB DBREF 2DB5 A 8 122 UNP Q8NI35 INADL_HUMAN 114 229 SEQADV 2DB5 GLY A 1 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DB5 SER A 2 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DB5 SER A 3 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DB5 GLY A 4 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DB5 SER A 5 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DB5 SER A 6 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DB5 GLY A 7 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DB5 SER A 123 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DB5 GLY A 124 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DB5 PRO A 125 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DB5 SER A 126 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DB5 SER A 127 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DB5 GLY A 128 UNP Q8NI35 CLONING ARTIFACT SEQRES 1 A 128 GLY SER SER GLY SER SER GLY LEU GLY ASN GLU ASP PHE SEQRES 2 A 128 ASN SER VAL ILE GLN GLN MET ALA GLN GLY ARG GLN ILE SEQRES 3 A 128 GLU TYR ILE ASP ILE GLU ARG PRO SER THR GLY GLY LEU SEQRES 4 A 128 GLY PHE SER VAL VAL ALA LEU ARG SER GLN ASN LEU GLY SEQRES 5 A 128 LYS VAL ASP ILE PHE VAL LYS ASP VAL GLN PRO GLY SER SEQRES 6 A 128 VAL ALA ASP ARG ASP GLN ARG LEU LYS GLU ASN ASP GLN SEQRES 7 A 128 ILE LEU ALA ILE ASN HIS THR PRO LEU ASP GLN ASN ILE SEQRES 8 A 128 SER HIS GLN GLN ALA ILE ALA LEU LEU GLN GLN THR THR SEQRES 9 A 128 GLY SER LEU ARG LEU ILE VAL ALA ARG GLU PRO VAL HIS SEQRES 10 A 128 THR LYS SER SER THR SER GLY PRO SER SER GLY HELIX 1 1 ASP A 12 GLN A 22 1 11 HELIX 2 2 SER A 65 ASP A 70 1 6 HELIX 3 3 SER A 92 THR A 103 1 12 SHEET 1 A 3 GLN A 25 GLU A 32 0 SHEET 2 A 3 SER A 106 ARG A 113 -1 O LEU A 107 N ILE A 31 SHEET 3 A 3 ILE A 79 ILE A 82 -1 N LEU A 80 O ILE A 110 SHEET 1 B 2 SER A 42 ARG A 47 0 SHEET 2 B 2 VAL A 54 LYS A 59 -1 O ASP A 55 N LEU A 46 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1