HEADER PROTEIN BINDING 15-DEC-05 2DB8 TITLE SOLUTION STRUCTURES OF THE FN3 DOMAIN OF HUMAN TRIPARTITE MOTIF TITLE 2 PROTEIN 9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIPARTITE MOTIF PROTEIN 9, ISOFORM 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FIBRONECTIN TYPE III DOMAIN; COMPND 5 SYNONYM: TRIPARTITE MOTIF PROTEIN 9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TRIM9; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P040921-16; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS RING FINGER PROTEIN 91, TRIM9, KIAA0282, RNF91, STRUCTURAL GENOMICS, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 4 PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.SATO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DB8 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DB8 1 VERSN REVDAT 1 15-JUN-06 2DB8 0 JRNL AUTH M.SATO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURES OF THE FN3 DOMAIN OF HUMAN TRIPARTITE JRNL TITL 2 MOTIF PROTEIN 9 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DB8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000025209. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM FN3 DOMAIN U-15N,13C; 20MM D REMARK 210 -TRIS HCL; 100MM NACL; 1MM D-DTT; REMARK 210 0.02% NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LEAST RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 16 47.84 -109.64 REMARK 500 1 LEU A 17 124.91 -38.59 REMARK 500 1 CYS A 20 -46.66 -130.21 REMARK 500 1 ASN A 25 58.31 -110.34 REMARK 500 1 TRP A 31 -177.68 -60.44 REMARK 500 1 SER A 37 103.81 -56.96 REMARK 500 1 ASP A 50 40.38 -86.92 REMARK 500 1 MET A 66 115.44 -166.15 REMARK 500 1 ASN A 75 44.27 34.57 REMARK 500 1 THR A 88 -72.51 -52.26 REMARK 500 1 THR A 96 113.94 -34.03 REMARK 500 1 SER A 108 -59.87 -131.84 REMARK 500 2 SER A 6 50.46 -101.46 REMARK 500 2 PRO A 8 -174.69 -69.74 REMARK 500 2 GLU A 18 -66.59 -102.20 REMARK 500 2 GLU A 19 107.10 -46.84 REMARK 500 2 ASN A 25 41.42 -108.46 REMARK 500 2 TRP A 31 175.54 -48.33 REMARK 500 2 PRO A 35 0.62 -69.74 REMARK 500 2 ASP A 50 39.37 -89.47 REMARK 500 2 ASN A 75 44.86 38.69 REMARK 500 2 THR A 88 -71.37 -44.78 REMARK 500 2 SER A 94 -177.36 -64.94 REMARK 500 2 THR A 96 118.15 -35.69 REMARK 500 3 LEU A 15 90.59 -54.18 REMARK 500 3 GLN A 16 54.33 -119.96 REMARK 500 3 LEU A 17 167.72 -47.82 REMARK 500 3 GLU A 19 106.21 -37.71 REMARK 500 3 CYS A 20 -63.43 -104.75 REMARK 500 3 HIS A 23 -47.82 -131.19 REMARK 500 3 ASP A 50 35.34 -86.06 REMARK 500 3 LYS A 63 52.96 -117.08 REMARK 500 3 THR A 96 125.73 -35.87 REMARK 500 3 LEU A 99 77.01 -113.05 REMARK 500 3 SER A 108 94.36 -59.31 REMARK 500 3 SER A 109 165.20 -49.73 REMARK 500 4 ALA A 11 130.29 -35.43 REMARK 500 4 GLN A 16 75.87 -111.57 REMARK 500 4 CYS A 21 112.84 -170.98 REMARK 500 4 ASN A 24 -71.12 -61.47 REMARK 500 4 ASP A 50 44.47 -81.30 REMARK 500 4 ASN A 75 52.60 38.01 REMARK 500 4 LYS A 95 103.93 -35.70 REMARK 500 4 THR A 96 114.88 -34.66 REMARK 500 4 THR A 101 154.21 -37.51 REMARK 500 5 CYS A 20 -55.58 -122.85 REMARK 500 5 ASN A 25 49.09 -94.81 REMARK 500 5 SER A 30 58.12 -113.55 REMARK 500 5 TRP A 31 155.03 -46.81 REMARK 500 5 ASP A 50 44.28 -82.36 REMARK 500 REMARK 500 THIS ENTRY HAS 213 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002012704.1 RELATED DB: TARGETDB DBREF 2DB8 A 8 104 UNP Q9C026 TRIM9_HUMAN 437 534 SEQADV 2DB8 GLY A 1 UNP Q9C026 CLONING ARTIFACT SEQADV 2DB8 SER A 2 UNP Q9C026 CLONING ARTIFACT SEQADV 2DB8 SER A 3 UNP Q9C026 CLONING ARTIFACT SEQADV 2DB8 GLY A 4 UNP Q9C026 CLONING ARTIFACT SEQADV 2DB8 SER A 5 UNP Q9C026 CLONING ARTIFACT SEQADV 2DB8 SER A 6 UNP Q9C026 CLONING ARTIFACT SEQADV 2DB8 GLY A 7 UNP Q9C026 CLONING ARTIFACT SEQADV 2DB8 SER A 105 UNP Q9C026 CLONING ARTIFACT SEQADV 2DB8 GLY A 106 UNP Q9C026 CLONING ARTIFACT SEQADV 2DB8 PRO A 107 UNP Q9C026 CLONING ARTIFACT SEQADV 2DB8 SER A 108 UNP Q9C026 CLONING ARTIFACT SEQADV 2DB8 SER A 109 UNP Q9C026 CLONING ARTIFACT SEQADV 2DB8 GLY A 110 UNP Q9C026 CLONING ARTIFACT SEQRES 1 A 110 GLY SER SER GLY SER SER GLY PRO VAL PRO ALA THR PRO SEQRES 2 A 110 ILE LEU GLN LEU GLU GLU CYS CYS THR HIS ASN ASN SER SEQRES 3 A 110 ALA THR LEU SER TRP LYS GLN PRO PRO LEU SER THR VAL SEQRES 4 A 110 PRO ALA ASP GLY TYR ILE LEU GLU LEU ASP ASP GLY ASN SEQRES 5 A 110 GLY GLY GLN PHE ARG GLU VAL TYR VAL GLY LYS GLU THR SEQRES 6 A 110 MET CYS THR VAL ASP GLY LEU HIS PHE ASN SER THR TYR SEQRES 7 A 110 ASN ALA ARG VAL LYS ALA PHE ASN LYS THR GLY VAL SER SEQRES 8 A 110 PRO TYR SER LYS THR LEU VAL LEU GLN THR SER GLU GLY SEQRES 9 A 110 SER GLY PRO SER SER GLY SHEET 1 A 2 SER A 26 LEU A 29 0 SHEET 2 A 2 CYS A 67 ASP A 70 -1 O CYS A 67 N LEU A 29 SHEET 1 B 4 ARG A 57 GLY A 62 0 SHEET 2 B 4 GLY A 43 LEU A 48 -1 N LEU A 46 O TYR A 60 SHEET 3 B 4 ASN A 79 PHE A 85 -1 O PHE A 85 N GLY A 43 SHEET 4 B 4 LEU A 97 VAL A 98 -1 O LEU A 97 N ALA A 80 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1