data_2DCO # _entry.id 2DCO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DCO pdb_00002dco 10.2210/pdb2dco/pdb RCSB RCSB025257 ? ? WWPDB D_1000025257 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DCO _pdbx_database_status.recvd_initial_deposition_date 2006-01-11 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pham, T.C.T.' 1 'Kriwacki, R.W.' 2 'Parrill, A.L.' 3 # _citation.id primary _citation.title 'Peptide design and structural characterization of a GPCR loop mimetic' _citation.journal_abbrev Biopolymers _citation.journal_volume 86 _citation.page_first 298 _citation.page_last 310 _citation.year 2007 _citation.journal_id_ASTM BIPMAA _citation.country US _citation.journal_id_ISSN 0006-3525 _citation.journal_id_CSD 0161 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17443712 _citation.pdbx_database_id_DOI 10.1002/bip.20745 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pham, T.C.T.' 1 ? primary 'Kriwacki, R.W.' 2 ? primary 'Parrill, A.L.' 3 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'S1P4 First Extracellular Loop Peptidomimetic' _entity.formula_weight 3891.223 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation L10C/A28C _entity.pdbx_fragment 'Extracellular Loop 1' _entity.details ;This protein is a fusion protein. Residues 13-26 and 29-30 are from the first extracellular loop of S1P4 receptor. The rest, residues 3-12, 27-28, and 31-34 are from Arfatin (PDB entry 1I49) segments 139-148, 164-164, 168-171 of 1I49 that we designed to be in the sequence. ; # _entity_name_com.entity_id 1 _entity_name_com.name ;Arfaptin-2, ADP-ribosylation factor-interacting protein 2, Partner of RAC1, Protein POR1phingosine 1-phosphate receptor Edg-6, S1P receptor Edg-6, Endothelial differentiation G-protein coupled receptor 6, Sphingosine 1-phosphate receptor 4, S1P4 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSYDAYRTDCEELSGARTFRLAPAQWSCRETFQA _entity_poly.pdbx_seq_one_letter_code_can GSYDAYRTDCEELSGARTFRLAPAQWSCRETFQA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 TYR n 1 4 ASP n 1 5 ALA n 1 6 TYR n 1 7 ARG n 1 8 THR n 1 9 ASP n 1 10 CYS n 1 11 GLU n 1 12 GLU n 1 13 LEU n 1 14 SER n 1 15 GLY n 1 16 ALA n 1 17 ARG n 1 18 THR n 1 19 PHE n 1 20 ARG n 1 21 LEU n 1 22 ALA n 1 23 PRO n 1 24 ALA n 1 25 GLN n 1 26 TRP n 1 27 SER n 1 28 CYS n 1 29 ARG n 1 30 GLU n 1 31 THR n 1 32 PHE n 1 33 GLN n 1 34 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene S1P4 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET-32a, CCE1a' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP ARFP2_HUMAN P53365 1 ? 235 ? 2 UNP EDG6_HUMAN O95977 1 ? 105 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2DCO A 3 ? 12 ? P53365 235 ? 244 ? 3 12 2 2 2DCO A 13 ? 26 ? O95977 105 ? 118 ? 13 26 3 1 2DCO A 27 ? 28 ? P53365 260 ? 261 ? 27 28 4 2 2DCO A 29 ? 30 ? O95977 121 ? 122 ? 29 30 5 1 2DCO A 31 ? 34 ? P53365 264 ? 267 ? 31 34 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DCO GLY A 1 ? UNP P53365 ? ? 'cloning artifact' 1 1 1 2DCO SER A 2 ? UNP P53365 ? ? 'cloning artifact' 2 2 1 2DCO CYS A 10 ? UNP P53365 LEU 241 'engineered mutation' 10 3 1 2DCO CYS A 28 ? UNP P53365 ALA 261 'engineered mutation' 28 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 2 3D_15N-separated_NOESY 2 2 2 3D_13C-separated_NOESY 2 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 303 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength '0.06 mol/kg' _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '1mM CCE1a U-15N; 10mM phosphate buffer pH 6; 20% TFE-d3, 0.025% NaN3' '20% TFE-d3' 2 '3mM CCE1a U-15N,13C; 10mM phosphate buffer pH 6; 20% TFE-d3, 0.025% NaN3' '20% TFE-d3' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 INOVA Varian 600 ? 2 INOVA Varian 500 ? # _pdbx_nmr_refine.entry_id 2DCO _pdbx_nmr_refine.method ;simulated annealing, matrix relaxation, torsion angle dynamics, energy minimization ; _pdbx_nmr_refine.details ;the structures are based on a total of 748 NOE-derived distance constraints ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 2DCO _pdbx_nmr_details.text 'The structure was determined using triple-resonance NMR spectroscopy.' # _pdbx_nmr_ensemble.entry_id 2DCO _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DCO _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'extended first helix' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal processing NMRPipe 3.1 Delaglio 1 'data analysis' Felix 98 Accelerys 2 'structure solution' CNS 1.1 Brunger 3 refinement ARIA 1.2 Linge 4 refinement Amber 8.0 Case 5 # _exptl.entry_id 2DCO _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DCO _struct.title 'S1P4 First Extracellular Loop Peptidomimetic' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DCO _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' _struct_keywords.text 'coiled coil, disulfide, helix-turn-helix, 3-10 helix, MEMBRANE PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 2 ? ALA A 5 ? SER A 2 ALA A 5 5 ? 4 HELX_P HELX_P2 2 TYR A 6 ? GLY A 15 ? TYR A 6 GLY A 15 1 ? 10 HELX_P HELX_P3 3 ALA A 16 ? ARG A 20 ? ALA A 16 ARG A 20 5 ? 5 HELX_P HELX_P4 4 SER A 27 ? PHE A 32 ? SER A 27 PHE A 32 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 10 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 28 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 10 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 28 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.033 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 2DCO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DCO _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 TYR 3 3 3 TYR TYR A . n A 1 4 ASP 4 4 4 ASP ASP A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 TYR 6 6 6 TYR TYR A . n A 1 7 ARG 7 7 7 ARG ARG A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 ASP 9 9 9 ASP ASP A . n A 1 10 CYS 10 10 10 CYS CYS A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 ARG 17 17 17 ARG ARG A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 PRO 23 23 23 PRO PRO A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 GLN 25 25 25 GLN GLN A . n A 1 26 TRP 26 26 26 TRP TRP A . n A 1 27 SER 27 27 27 SER SER A . n A 1 28 CYS 28 28 28 CYS CYS A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 PHE 32 32 32 PHE PHE A . n A 1 33 GLN 33 33 33 GLN GLN A . n A 1 34 ALA 34 34 34 ALA ALA A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-01-23 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-11-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OD1 A ASP 9 ? ? HG A SER 27 ? ? 1.50 2 2 OD2 A ASP 9 ? ? HG A SER 27 ? ? 1.53 3 3 OD2 A ASP 9 ? ? HG A SER 27 ? ? 1.57 4 4 OD2 A ASP 4 ? ? HH A TYR 6 ? ? 1.48 5 4 OD1 A ASP 9 ? ? HG A SER 27 ? ? 1.52 6 5 OD2 A ASP 9 ? ? HG A SER 27 ? ? 1.48 7 6 OD2 A ASP 9 ? ? HG A SER 27 ? ? 1.56 8 7 OD2 A ASP 9 ? ? HG A SER 27 ? ? 1.42 9 8 OD2 A ASP 9 ? ? HG A SER 27 ? ? 1.41 10 8 OD2 A ASP 4 ? ? HH A TYR 6 ? ? 1.52 11 9 OD2 A ASP 9 ? ? HG A SER 27 ? ? 1.58 12 10 OD2 A ASP 9 ? ? HG A SER 27 ? ? 1.52 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 5 NE A ARG 29 ? ? CZ A ARG 29 ? ? NH1 A ARG 29 ? ? 123.78 120.30 3.48 0.50 N 2 6 NE A ARG 29 ? ? CZ A ARG 29 ? ? NH1 A ARG 29 ? ? 123.82 120.30 3.52 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 3 ? ? -40.01 103.80 2 1 ASP A 4 ? ? 33.97 42.26 3 1 ALA A 5 ? ? 58.67 9.12 4 1 ARG A 20 ? ? -130.15 -75.20 5 1 LEU A 21 ? ? 36.37 -4.96 6 1 ALA A 22 ? ? -137.46 -50.81 7 1 SER A 27 ? ? -133.44 -68.36 8 1 GLU A 30 ? ? -151.35 -35.31 9 2 TYR A 3 ? ? -32.28 106.56 10 2 ASP A 4 ? ? 33.75 41.98 11 2 ALA A 5 ? ? 56.04 -0.67 12 2 ARG A 20 ? ? -133.31 -72.33 13 2 LEU A 21 ? ? 33.17 -2.53 14 2 ALA A 22 ? ? -136.73 -48.15 15 2 GLN A 25 ? ? -74.02 44.34 16 2 TRP A 26 ? ? -140.55 14.01 17 2 SER A 27 ? ? -133.63 -66.54 18 2 GLU A 30 ? ? -145.47 -29.64 19 3 SER A 2 ? ? 66.14 163.20 20 3 ASP A 4 ? ? 36.71 50.94 21 3 ALA A 5 ? ? 56.63 11.51 22 3 CYS A 10 ? ? -62.29 7.07 23 3 ARG A 20 ? ? -132.63 -70.77 24 3 LEU A 21 ? ? 35.34 -3.28 25 3 ALA A 22 ? ? -134.98 -47.28 26 3 GLN A 25 ? ? -72.20 37.56 27 3 SER A 27 ? ? -127.46 -76.89 28 3 GLU A 30 ? ? -142.60 -40.45 29 3 PHE A 32 ? ? -144.28 15.51 30 4 SER A 2 ? ? 48.52 20.59 31 4 TYR A 3 ? ? -35.48 112.70 32 4 ASP A 4 ? ? 34.00 41.28 33 4 ALA A 5 ? ? 57.85 13.66 34 4 CYS A 10 ? ? -61.04 6.57 35 4 ARG A 20 ? ? -131.52 -75.83 36 4 LEU A 21 ? ? 35.69 -2.08 37 4 ALA A 22 ? ? -139.80 -43.94 38 4 SER A 27 ? ? -131.83 -70.40 39 4 GLU A 30 ? ? -151.54 -31.25 40 4 PHE A 32 ? ? -144.14 12.61 41 5 TYR A 3 ? ? -41.44 104.45 42 5 ASP A 4 ? ? 36.70 43.56 43 5 ALA A 5 ? ? 59.97 -21.67 44 5 CYS A 10 ? ? -62.61 6.11 45 5 ARG A 20 ? ? -130.42 -66.68 46 5 LEU A 21 ? ? 34.48 -5.10 47 5 ALA A 22 ? ? -135.75 -53.10 48 5 GLN A 25 ? ? -78.48 44.36 49 5 SER A 27 ? ? -129.01 -59.96 50 5 GLU A 30 ? ? -151.20 -36.03 51 5 PHE A 32 ? ? -143.48 11.33 52 6 TYR A 3 ? ? -37.86 101.77 53 6 ASP A 4 ? ? 31.47 44.47 54 6 ALA A 5 ? ? 59.33 6.93 55 6 ARG A 20 ? ? -128.48 -78.69 56 6 LEU A 21 ? ? 38.00 -5.58 57 6 ALA A 22 ? ? -134.82 -49.99 58 6 GLN A 25 ? ? -72.73 42.52 59 6 TRP A 26 ? ? -148.06 20.12 60 6 SER A 27 ? ? -129.96 -77.96 61 6 GLU A 30 ? ? -150.00 -37.07 62 7 TYR A 3 ? ? -39.13 108.91 63 7 ASP A 4 ? ? 35.92 43.76 64 7 ALA A 5 ? ? 57.24 -27.68 65 7 ARG A 20 ? ? -130.87 -69.87 66 7 LEU A 21 ? ? 34.52 -7.95 67 7 ALA A 22 ? ? -137.14 -51.63 68 7 GLN A 25 ? ? -79.40 40.04 69 7 TRP A 26 ? ? -145.38 28.47 70 7 SER A 27 ? ? -136.31 -75.21 71 7 GLU A 30 ? ? -152.04 -34.38 72 8 TYR A 3 ? ? -37.62 106.36 73 8 ASP A 4 ? ? 33.82 43.25 74 8 ALA A 5 ? ? 56.93 3.99 75 8 ARG A 20 ? ? -128.63 -76.88 76 8 LEU A 21 ? ? 37.00 -4.73 77 8 ALA A 22 ? ? -140.44 -47.64 78 8 GLN A 25 ? ? -73.29 46.57 79 8 TRP A 26 ? ? -147.58 30.76 80 8 SER A 27 ? ? -135.38 -82.61 81 8 GLU A 30 ? ? -143.85 -41.11 82 8 PHE A 32 ? ? -143.61 10.22 83 9 SER A 2 ? ? 46.26 19.98 84 9 TYR A 3 ? ? -32.84 104.71 85 9 ASP A 4 ? ? 33.74 45.34 86 9 ALA A 5 ? ? 57.42 10.78 87 9 CYS A 10 ? ? -58.08 -1.60 88 9 ARG A 20 ? ? -127.82 -80.21 89 9 LEU A 21 ? ? 38.28 -4.39 90 9 ALA A 22 ? ? -136.87 -47.87 91 9 GLN A 25 ? ? -71.38 27.87 92 9 SER A 27 ? ? -128.31 -71.45 93 9 GLU A 30 ? ? -150.72 -35.01 94 10 TYR A 3 ? ? -37.51 101.41 95 10 ASP A 4 ? ? 35.91 40.84 96 10 ALA A 5 ? ? 59.08 8.60 97 10 ARG A 20 ? ? -131.66 -75.45 98 10 LEU A 21 ? ? 38.78 -6.78 99 10 ALA A 22 ? ? -136.00 -45.12 100 10 GLN A 25 ? ? -70.74 30.66 101 10 SER A 27 ? ? -133.62 -74.78 102 10 GLU A 30 ? ? -139.97 -43.84 103 10 PHE A 32 ? ? -141.87 16.56 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 2 GLY A 1 ? ? SER A 2 ? ? 141.83 2 4 GLY A 1 ? ? SER A 2 ? ? 149.49 3 5 GLY A 1 ? ? SER A 2 ? ? 143.59 4 7 GLY A 1 ? ? SER A 2 ? ? 144.71 5 8 GLY A 1 ? ? SER A 2 ? ? 148.16 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 4 TYR A 6 ? ? 0.084 'SIDE CHAIN' 2 8 TYR A 6 ? ? 0.095 'SIDE CHAIN' #