data_2DH9 # _entry.id 2DH9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DH9 pdb_00002dh9 10.2210/pdb2dh9/pdb RCSB RCSB025417 ? ? WWPDB D_1000025417 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk003002075.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DH9 _pdbx_database_status.recvd_initial_deposition_date 2006-03-23 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ochi, T.' 1 'Tsuda, K.' 2 'Muto, Y.' 3 'Inoue, M.' 4 'Kigawa, T.' 5 'Terada, T.' 6 'Shirouzu, M.' 7 'Yokoyama, S.' 8 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 9 # _citation.id primary _citation.title 'Solution structure of the C-terminal RNA binding domain in Heterogeneous nuclear ribonucleoprotein M' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ochi, T.' 1 ? primary 'Tsuda, K.' 2 ? primary 'Muto, Y.' 3 ? primary 'Inoue, M.' 4 ? primary 'Kigawa, T.' 5 ? primary 'Terada, T.' 6 ? primary 'Shirouzu, M.' 7 ? primary 'Yokoyama, S.' 8 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Heterogeneous nuclear ribonucleoprotein M' _entity.formula_weight 9779.211 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'RNA recognition motif' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'hnRNP M' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID RNASGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID RNASGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk003002075.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 ILE n 1 9 PHE n 1 10 VAL n 1 11 ARG n 1 12 ASN n 1 13 LEU n 1 14 PRO n 1 15 PHE n 1 16 ASP n 1 17 PHE n 1 18 THR n 1 19 TRP n 1 20 LYS n 1 21 MET n 1 22 LEU n 1 23 LYS n 1 24 ASP n 1 25 LYS n 1 26 PHE n 1 27 ASN n 1 28 GLU n 1 29 CYS n 1 30 GLY n 1 31 HIS n 1 32 VAL n 1 33 LEU n 1 34 TYR n 1 35 ALA n 1 36 ASP n 1 37 ILE n 1 38 LYS n 1 39 MET n 1 40 GLU n 1 41 ASN n 1 42 GLY n 1 43 LYS n 1 44 SER n 1 45 LYS n 1 46 GLY n 1 47 CYS n 1 48 GLY n 1 49 VAL n 1 50 VAL n 1 51 LYS n 1 52 PHE n 1 53 GLU n 1 54 SER n 1 55 PRO n 1 56 GLU n 1 57 VAL n 1 58 ALA n 1 59 GLU n 1 60 ARG n 1 61 ALA n 1 62 CYS n 1 63 ARG n 1 64 MET n 1 65 MET n 1 66 ASN n 1 67 GLY n 1 68 MET n 1 69 LYS n 1 70 LEU n 1 71 SER n 1 72 GLY n 1 73 ARG n 1 74 GLU n 1 75 ILE n 1 76 ASP n 1 77 VAL n 1 78 ARG n 1 79 ILE n 1 80 ASP n 1 81 ARG n 1 82 ASN n 1 83 ALA n 1 84 SER n 1 85 GLY n 1 86 PRO n 1 87 SER n 1 88 SER n 1 89 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene HNRPM _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050711-05 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code HNRPM_HUMAN _struct_ref.pdbx_db_accession P52272 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 654 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DH9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 83 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P52272 _struct_ref_seq.db_align_beg 654 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 729 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 540 _struct_ref_seq.pdbx_auth_seq_align_end 615 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DH9 GLY A 1 ? UNP P52272 ? ? 'cloning artifact' 533 1 1 2DH9 SER A 2 ? UNP P52272 ? ? 'cloning artifact' 534 2 1 2DH9 SER A 3 ? UNP P52272 ? ? 'cloning artifact' 535 3 1 2DH9 GLY A 4 ? UNP P52272 ? ? 'cloning artifact' 536 4 1 2DH9 SER A 5 ? UNP P52272 ? ? 'cloning artifact' 537 5 1 2DH9 SER A 6 ? UNP P52272 ? ? 'cloning artifact' 538 6 1 2DH9 GLY A 7 ? UNP P52272 ? ? 'cloning artifact' 539 7 1 2DH9 SER A 84 ? UNP P52272 ? ? 'cloning artifact' 616 8 1 2DH9 GLY A 85 ? UNP P52272 ? ? 'cloning artifact' 617 9 1 2DH9 PRO A 86 ? UNP P52272 ? ? 'cloning artifact' 618 10 1 2DH9 SER A 87 ? UNP P52272 ? ? 'cloning artifact' 619 11 1 2DH9 SER A 88 ? UNP P52272 ? ? 'cloning artifact' 620 12 1 2DH9 GLY A 89 ? UNP P52272 ? ? 'cloning artifact' 621 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 100mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '20mM d-Tris-HCl(pH 7.0), 100mM NaCl, 1mM d-DTT, 0.02% NaN3, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DH9 _pdbx_nmr_refine.method 'torsion angle dynamics,restrainted molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DH9 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function,structures with the lowest energy,structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DH9 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 Delaglio,F 2 'data analysis' NMRView 5.0.4 Johnson,B.A 3 'data analysis' KUJIRA 0.932 Kobayashi,N 4 'structure solution' CYANA 2.0 Guntert,P 5 refinement CYANA 2.0 Guntert,P 6 # _exptl.entry_id 2DH9 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DH9 _struct.title 'Solution structure of the C-terminal RNA binding domain in Heterogeneous nuclear ribonucleoprotein M' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DH9 _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text ;RRM domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, RNA BINDING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 18 ? GLU A 28 ? THR A 550 GLU A 560 1 ? 11 HELX_P HELX_P2 2 SER A 54 ? MET A 65 ? SER A 586 MET A 597 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 32 ? ASP A 36 ? VAL A 564 ASP A 568 A 2 CYS A 47 ? PHE A 52 ? CYS A 579 PHE A 584 A 3 GLY A 7 ? ARG A 11 ? GLY A 539 ARG A 543 A 4 ARG A 78 ? ASP A 80 ? ARG A 610 ASP A 612 B 1 MET A 39 ? GLU A 40 ? MET A 571 GLU A 572 B 2 LYS A 43 ? SER A 44 ? LYS A 575 SER A 576 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 33 ? N LEU A 565 O LYS A 51 ? O LYS A 583 A 2 3 O VAL A 50 ? O VAL A 582 N ILE A 8 ? N ILE A 540 A 3 4 N PHE A 9 ? N PHE A 541 O ARG A 78 ? O ARG A 610 B 1 2 N GLU A 40 ? N GLU A 572 O LYS A 43 ? O LYS A 575 # _database_PDB_matrix.entry_id 2DH9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DH9 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 533 533 GLY GLY A . n A 1 2 SER 2 534 534 SER SER A . n A 1 3 SER 3 535 535 SER SER A . n A 1 4 GLY 4 536 536 GLY GLY A . n A 1 5 SER 5 537 537 SER SER A . n A 1 6 SER 6 538 538 SER SER A . n A 1 7 GLY 7 539 539 GLY GLY A . n A 1 8 ILE 8 540 540 ILE ILE A . n A 1 9 PHE 9 541 541 PHE PHE A . n A 1 10 VAL 10 542 542 VAL VAL A . n A 1 11 ARG 11 543 543 ARG ARG A . n A 1 12 ASN 12 544 544 ASN ASN A . n A 1 13 LEU 13 545 545 LEU LEU A . n A 1 14 PRO 14 546 546 PRO PRO A . n A 1 15 PHE 15 547 547 PHE PHE A . n A 1 16 ASP 16 548 548 ASP ASP A . n A 1 17 PHE 17 549 549 PHE PHE A . n A 1 18 THR 18 550 550 THR THR A . n A 1 19 TRP 19 551 551 TRP TRP A . n A 1 20 LYS 20 552 552 LYS LYS A . n A 1 21 MET 21 553 553 MET MET A . n A 1 22 LEU 22 554 554 LEU LEU A . n A 1 23 LYS 23 555 555 LYS LYS A . n A 1 24 ASP 24 556 556 ASP ASP A . n A 1 25 LYS 25 557 557 LYS LYS A . n A 1 26 PHE 26 558 558 PHE PHE A . n A 1 27 ASN 27 559 559 ASN ASN A . n A 1 28 GLU 28 560 560 GLU GLU A . n A 1 29 CYS 29 561 561 CYS CYS A . n A 1 30 GLY 30 562 562 GLY GLY A . n A 1 31 HIS 31 563 563 HIS HIS A . n A 1 32 VAL 32 564 564 VAL VAL A . n A 1 33 LEU 33 565 565 LEU LEU A . n A 1 34 TYR 34 566 566 TYR TYR A . n A 1 35 ALA 35 567 567 ALA ALA A . n A 1 36 ASP 36 568 568 ASP ASP A . n A 1 37 ILE 37 569 569 ILE ILE A . n A 1 38 LYS 38 570 570 LYS LYS A . n A 1 39 MET 39 571 571 MET MET A . n A 1 40 GLU 40 572 572 GLU GLU A . n A 1 41 ASN 41 573 573 ASN ASN A . n A 1 42 GLY 42 574 574 GLY GLY A . n A 1 43 LYS 43 575 575 LYS LYS A . n A 1 44 SER 44 576 576 SER SER A . n A 1 45 LYS 45 577 577 LYS LYS A . n A 1 46 GLY 46 578 578 GLY GLY A . n A 1 47 CYS 47 579 579 CYS CYS A . n A 1 48 GLY 48 580 580 GLY GLY A . n A 1 49 VAL 49 581 581 VAL VAL A . n A 1 50 VAL 50 582 582 VAL VAL A . n A 1 51 LYS 51 583 583 LYS LYS A . n A 1 52 PHE 52 584 584 PHE PHE A . n A 1 53 GLU 53 585 585 GLU GLU A . n A 1 54 SER 54 586 586 SER SER A . n A 1 55 PRO 55 587 587 PRO PRO A . n A 1 56 GLU 56 588 588 GLU GLU A . n A 1 57 VAL 57 589 589 VAL VAL A . n A 1 58 ALA 58 590 590 ALA ALA A . n A 1 59 GLU 59 591 591 GLU GLU A . n A 1 60 ARG 60 592 592 ARG ARG A . n A 1 61 ALA 61 593 593 ALA ALA A . n A 1 62 CYS 62 594 594 CYS CYS A . n A 1 63 ARG 63 595 595 ARG ARG A . n A 1 64 MET 64 596 596 MET MET A . n A 1 65 MET 65 597 597 MET MET A . n A 1 66 ASN 66 598 598 ASN ASN A . n A 1 67 GLY 67 599 599 GLY GLY A . n A 1 68 MET 68 600 600 MET MET A . n A 1 69 LYS 69 601 601 LYS LYS A . n A 1 70 LEU 70 602 602 LEU LEU A . n A 1 71 SER 71 603 603 SER SER A . n A 1 72 GLY 72 604 604 GLY GLY A . n A 1 73 ARG 73 605 605 ARG ARG A . n A 1 74 GLU 74 606 606 GLU GLU A . n A 1 75 ILE 75 607 607 ILE ILE A . n A 1 76 ASP 76 608 608 ASP ASP A . n A 1 77 VAL 77 609 609 VAL VAL A . n A 1 78 ARG 78 610 610 ARG ARG A . n A 1 79 ILE 79 611 611 ILE ILE A . n A 1 80 ASP 80 612 612 ASP ASP A . n A 1 81 ARG 81 613 613 ARG ARG A . n A 1 82 ASN 82 614 614 ASN ASN A . n A 1 83 ALA 83 615 615 ALA ALA A . n A 1 84 SER 84 616 616 SER SER A . n A 1 85 GLY 85 617 617 GLY GLY A . n A 1 86 PRO 86 618 618 PRO PRO A . n A 1 87 SER 87 619 619 SER SER A . n A 1 88 SER 88 620 620 SER SER A . n A 1 89 GLY 89 621 621 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-09-23 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 544 ? ? 73.89 39.34 2 1 PHE A 549 ? ? -39.42 107.58 3 1 ALA A 567 ? ? -167.33 109.72 4 1 ASN A 614 ? ? 36.42 49.50 5 2 SER A 535 ? ? -99.99 43.37 6 2 ASN A 544 ? ? 73.86 36.92 7 2 ASP A 548 ? ? -35.22 -38.23 8 2 LEU A 554 ? ? -36.54 -36.01 9 2 LYS A 555 ? ? -80.54 -72.12 10 2 ALA A 567 ? ? -162.04 113.90 11 2 LYS A 570 ? ? -48.14 95.97 12 2 GLU A 572 ? ? -172.54 148.83 13 2 LYS A 577 ? ? -99.01 34.48 14 2 ASN A 598 ? ? -36.79 125.07 15 2 PRO A 618 ? ? -69.77 98.06 16 3 SER A 534 ? ? -35.87 152.47 17 3 SER A 538 ? ? -104.27 77.26 18 3 ASN A 544 ? ? 74.80 36.43 19 3 LYS A 570 ? ? -56.49 107.88 20 3 GLU A 572 ? ? -174.15 119.11 21 3 ASP A 612 ? ? -87.23 39.50 22 3 ALA A 615 ? ? -44.19 99.81 23 3 SER A 620 ? ? -174.79 144.61 24 4 PHE A 549 ? ? -44.38 108.25 25 4 LYS A 570 ? ? -56.72 105.45 26 4 GLU A 572 ? ? -173.72 129.16 27 5 SER A 535 ? ? -67.86 86.31 28 5 ASP A 548 ? ? -34.47 -39.28 29 5 LEU A 554 ? ? -38.71 -39.78 30 5 ASN A 598 ? ? -35.84 97.06 31 6 SER A 534 ? ? -39.37 147.18 32 6 ASP A 548 ? ? -34.09 -33.60 33 6 LYS A 570 ? ? -54.52 106.02 34 6 GLU A 572 ? ? -161.99 115.66 35 6 ASN A 598 ? ? -34.17 106.26 36 6 ASP A 612 ? ? -94.67 48.95 37 6 ASN A 614 ? ? -67.27 87.71 38 6 PRO A 618 ? ? -69.71 87.29 39 6 SER A 619 ? ? -55.15 103.84 40 7 SER A 535 ? ? -56.19 104.14 41 7 ASN A 544 ? ? 71.55 38.87 42 7 ASP A 548 ? ? -35.54 -32.30 43 7 ALA A 567 ? ? -161.17 118.89 44 7 LYS A 570 ? ? -49.35 105.25 45 7 SER A 576 ? ? -69.26 97.49 46 7 LYS A 577 ? ? -85.77 39.58 47 7 ASN A 598 ? ? -33.91 96.10 48 7 ASP A 612 ? ? -84.53 45.39 49 7 PRO A 618 ? ? -69.74 -177.00 50 8 PHE A 549 ? ? -45.98 103.88 51 8 ALA A 567 ? ? -166.83 113.84 52 8 ASN A 598 ? ? -34.12 97.56 53 8 ASP A 612 ? ? -103.90 72.63 54 9 SER A 537 ? ? -161.61 107.51 55 9 ASP A 548 ? ? -38.96 -26.53 56 9 LYS A 577 ? ? -96.08 30.53 57 9 ASN A 598 ? ? -34.35 100.32 58 10 SER A 537 ? ? -69.40 77.10 59 10 ASN A 544 ? ? 70.77 42.43 60 10 PHE A 549 ? ? -35.31 102.59 61 10 LYS A 555 ? ? -70.52 -72.71 62 10 LYS A 570 ? ? -39.93 103.24 63 10 GLU A 572 ? ? -167.18 118.66 64 10 ASN A 598 ? ? -34.68 126.43 65 10 ASP A 612 ? ? -102.84 63.18 66 10 ASN A 614 ? ? -38.70 155.28 67 10 ALA A 615 ? ? -66.14 89.37 68 11 ASN A 544 ? ? 70.36 54.96 69 11 LYS A 557 ? ? -38.34 -34.68 70 11 ALA A 567 ? ? -165.52 106.87 71 11 LYS A 570 ? ? -39.32 108.42 72 11 LYS A 577 ? ? -89.57 33.80 73 12 ASN A 544 ? ? 72.44 38.94 74 12 ASP A 548 ? ? -35.69 -31.13 75 12 LYS A 555 ? ? -66.29 -70.46 76 12 LYS A 570 ? ? -38.77 135.86 77 12 MET A 597 ? ? -69.24 -70.32 78 12 ASN A 598 ? ? -34.14 101.32 79 12 SER A 619 ? ? 37.33 42.40 80 13 SER A 534 ? ? -93.09 42.94 81 13 SER A 538 ? ? -62.13 89.55 82 13 ASN A 544 ? ? 74.07 34.21 83 13 PHE A 549 ? ? -38.59 106.87 84 13 LYS A 555 ? ? -70.96 -71.39 85 13 ALA A 567 ? ? -160.58 116.94 86 13 LYS A 570 ? ? -51.05 93.69 87 13 ASN A 598 ? ? -37.52 117.89 88 13 ARG A 613 ? ? -44.13 106.06 89 14 ASN A 544 ? ? 74.93 42.64 90 14 GLU A 572 ? ? -173.00 139.57 91 14 LYS A 577 ? ? -93.73 30.38 92 14 ASN A 598 ? ? -34.41 98.24 93 14 ASP A 612 ? ? -103.24 78.51 94 14 SER A 619 ? ? -40.13 103.39 95 15 SER A 537 ? ? -62.83 90.01 96 15 ASP A 548 ? ? -34.12 -36.13 97 15 LYS A 570 ? ? -53.52 104.90 98 15 LYS A 577 ? ? -92.66 30.71 99 15 ASN A 598 ? ? -39.70 121.61 100 15 ASP A 612 ? ? -99.45 58.13 101 16 SER A 534 ? ? -82.34 41.34 102 16 SER A 535 ? ? 34.54 40.29 103 16 LEU A 554 ? ? -37.16 -34.07 104 16 ASN A 598 ? ? -34.09 100.69 105 16 ARG A 613 ? ? -38.65 117.86 106 16 PRO A 618 ? ? -69.77 90.21 107 17 ASN A 544 ? ? 71.90 41.68 108 17 PHE A 549 ? ? -46.24 109.74 109 17 LEU A 554 ? ? -37.31 -36.52 110 17 LYS A 557 ? ? -36.49 -35.39 111 17 LYS A 570 ? ? -67.01 96.74 112 18 SER A 537 ? ? -52.61 173.02 113 18 ASN A 544 ? ? 73.56 33.59 114 18 ASP A 548 ? ? -38.22 -27.48 115 18 LYS A 555 ? ? -68.45 -74.09 116 18 ASN A 598 ? ? -37.95 104.97 117 18 SER A 603 ? ? 71.55 31.89 118 18 PRO A 618 ? ? -69.71 93.64 119 19 LYS A 555 ? ? -70.56 -70.18 120 19 ALA A 567 ? ? -160.40 116.72 121 19 ASN A 598 ? ? -35.33 96.54 122 20 LEU A 554 ? ? -37.16 -37.62 123 20 GLU A 572 ? ? -174.92 119.35 124 20 ASP A 612 ? ? -93.79 52.15 125 20 SER A 619 ? ? -42.70 104.80 #