data_2DI8 # _entry.id 2DI8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DI8 pdb_00002di8 10.2210/pdb2di8/pdb RCSB RCSB025444 ? ? WWPDB D_1000025444 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk003002600.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DI8 _pdbx_database_status.recvd_initial_deposition_date 2006-03-29 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tomizawa, T.' 1 'Koshiba, S.' 2 'Inoue, M.' 3 'Kigawa, T.' 4 'Yokoyama, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title 'Solution structure of the 19th filamin domain from human Filamin-B' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tomizawa, T.' 1 ? primary 'Koshiba, S.' 2 ? primary 'Inoue, M.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Yokoyama, S.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Filamin-B _entity.formula_weight 11537.700 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'Filamin domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ;FLN-B, Beta-filamin, Actin-binding-like protein, Thyroid autoantigen, Truncated actin-binding protein, Truncated ABP, ABP-280 homolog, ABP-278, Filamin 3, Filamin homolog 1, Fh1 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGIGDARRAKVYGRGLSEGRTFEMSDFIVDTRDAGYGGISLAVEGPSKVDIQTEDLEDGTCKVSYFPTVPGVYIV STKFADEHVPGSPFTVKISGEGRVKSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGIGDARRAKVYGRGLSEGRTFEMSDFIVDTRDAGYGGISLAVEGPSKVDIQTEDLEDGTCKVSYFPTVPGVYIV STKFADEHVPGSPFTVKISGEGRVKSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk003002600.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 ILE n 1 9 GLY n 1 10 ASP n 1 11 ALA n 1 12 ARG n 1 13 ARG n 1 14 ALA n 1 15 LYS n 1 16 VAL n 1 17 TYR n 1 18 GLY n 1 19 ARG n 1 20 GLY n 1 21 LEU n 1 22 SER n 1 23 GLU n 1 24 GLY n 1 25 ARG n 1 26 THR n 1 27 PHE n 1 28 GLU n 1 29 MET n 1 30 SER n 1 31 ASP n 1 32 PHE n 1 33 ILE n 1 34 VAL n 1 35 ASP n 1 36 THR n 1 37 ARG n 1 38 ASP n 1 39 ALA n 1 40 GLY n 1 41 TYR n 1 42 GLY n 1 43 GLY n 1 44 ILE n 1 45 SER n 1 46 LEU n 1 47 ALA n 1 48 VAL n 1 49 GLU n 1 50 GLY n 1 51 PRO n 1 52 SER n 1 53 LYS n 1 54 VAL n 1 55 ASP n 1 56 ILE n 1 57 GLN n 1 58 THR n 1 59 GLU n 1 60 ASP n 1 61 LEU n 1 62 GLU n 1 63 ASP n 1 64 GLY n 1 65 THR n 1 66 CYS n 1 67 LYS n 1 68 VAL n 1 69 SER n 1 70 TYR n 1 71 PHE n 1 72 PRO n 1 73 THR n 1 74 VAL n 1 75 PRO n 1 76 GLY n 1 77 VAL n 1 78 TYR n 1 79 ILE n 1 80 VAL n 1 81 SER n 1 82 THR n 1 83 LYS n 1 84 PHE n 1 85 ALA n 1 86 ASP n 1 87 GLU n 1 88 HIS n 1 89 VAL n 1 90 PRO n 1 91 GLY n 1 92 SER n 1 93 PRO n 1 94 PHE n 1 95 THR n 1 96 VAL n 1 97 LYS n 1 98 ILE n 1 99 SER n 1 100 GLY n 1 101 GLU n 1 102 GLY n 1 103 ARG n 1 104 VAL n 1 105 LYS n 1 106 SER n 1 107 GLY n 1 108 PRO n 1 109 SER n 1 110 SER n 1 111 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene FLNB _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050919-18 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code FLNB_HUMAN _struct_ref.pdbx_db_accession O75369 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1999 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DI8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 105 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O75369 _struct_ref_seq.db_align_beg 1999 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 2096 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 105 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DI8 GLY A 1 ? UNP O75369 ? ? 'cloning artifact' 1 1 1 2DI8 SER A 2 ? UNP O75369 ? ? 'cloning artifact' 2 2 1 2DI8 SER A 3 ? UNP O75369 ? ? 'cloning artifact' 3 3 1 2DI8 GLY A 4 ? UNP O75369 ? ? 'cloning artifact' 4 4 1 2DI8 SER A 5 ? UNP O75369 ? ? 'cloning artifact' 5 5 1 2DI8 SER A 6 ? UNP O75369 ? ? 'cloning artifact' 6 6 1 2DI8 GLY A 7 ? UNP O75369 ? ? 'cloning artifact' 7 7 1 2DI8 SER A 106 ? UNP O75369 ? ? 'cloning artifact' 106 8 1 2DI8 GLY A 107 ? UNP O75369 ? ? 'cloning artifact' 107 9 1 2DI8 PRO A 108 ? UNP O75369 ? ? 'cloning artifact' 108 10 1 2DI8 SER A 109 ? UNP O75369 ? ? 'cloning artifact' 109 11 1 2DI8 SER A 110 ? UNP O75369 ? ? 'cloning artifact' 110 12 1 2DI8 GLY A 111 ? UNP O75369 ? ? 'cloning artifact' 111 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.80mM Filamin domain U-15N,13C; 20mM d-Tris-HCl(pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DI8 _pdbx_nmr_refine.method 'torsion angle dynamics, restrainted molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DI8 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DI8 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9742 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2DI8 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DI8 _struct.title 'Solution structure of the 19th filamin domain from human Filamin-B' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DI8 _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' _struct_keywords.text ;beta-sandwich, immunoglobulin-like fold, filamin domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, STRUCTURAL PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ASP _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 10 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ALA _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 14 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ASP _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 10 _struct_conf.end_auth_comp_id ALA _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 14 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 92 A . ? SER 92 A PRO 93 A ? PRO 93 A 1 -0.11 2 SER 92 A . ? SER 92 A PRO 93 A ? PRO 93 A 2 0.00 3 SER 92 A . ? SER 92 A PRO 93 A ? PRO 93 A 3 -0.08 4 SER 92 A . ? SER 92 A PRO 93 A ? PRO 93 A 4 0.08 5 SER 92 A . ? SER 92 A PRO 93 A ? PRO 93 A 5 0.02 6 SER 92 A . ? SER 92 A PRO 93 A ? PRO 93 A 6 0.00 7 SER 92 A . ? SER 92 A PRO 93 A ? PRO 93 A 7 -0.06 8 SER 92 A . ? SER 92 A PRO 93 A ? PRO 93 A 8 -0.12 9 SER 92 A . ? SER 92 A PRO 93 A ? PRO 93 A 9 -0.10 10 SER 92 A . ? SER 92 A PRO 93 A ? PRO 93 A 10 -0.05 11 SER 92 A . ? SER 92 A PRO 93 A ? PRO 93 A 11 -0.08 12 SER 92 A . ? SER 92 A PRO 93 A ? PRO 93 A 12 0.03 13 SER 92 A . ? SER 92 A PRO 93 A ? PRO 93 A 13 -0.05 14 SER 92 A . ? SER 92 A PRO 93 A ? PRO 93 A 14 -0.09 15 SER 92 A . ? SER 92 A PRO 93 A ? PRO 93 A 15 0.01 16 SER 92 A . ? SER 92 A PRO 93 A ? PRO 93 A 16 -0.09 17 SER 92 A . ? SER 92 A PRO 93 A ? PRO 93 A 17 -0.04 18 SER 92 A . ? SER 92 A PRO 93 A ? PRO 93 A 18 0.04 19 SER 92 A . ? SER 92 A PRO 93 A ? PRO 93 A 19 -0.08 20 SER 92 A . ? SER 92 A PRO 93 A ? PRO 93 A 20 -0.01 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 15 ? GLY A 18 ? LYS A 15 GLY A 18 A 2 SER A 30 ? ASP A 35 ? SER A 30 ASP A 35 A 3 CYS A 66 ? TYR A 70 ? CYS A 66 TYR A 70 A 4 ILE A 56 ? GLN A 57 ? ILE A 56 GLN A 57 B 1 GLU A 23 ? ARG A 25 ? GLU A 23 ARG A 25 B 2 PHE A 94 ? SER A 99 ? PHE A 94 SER A 99 B 3 VAL A 77 ? PHE A 84 ? VAL A 77 PHE A 84 B 4 ILE A 44 ? GLU A 49 ? ILE A 44 GLU A 49 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 17 ? N TYR A 17 O ILE A 33 ? O ILE A 33 A 2 3 N SER A 30 ? N SER A 30 O TYR A 70 ? O TYR A 70 A 3 4 O SER A 69 ? O SER A 69 N GLN A 57 ? N GLN A 57 B 1 2 N GLY A 24 ? N GLY A 24 O SER A 99 ? O SER A 99 B 2 3 O PHE A 94 ? O PHE A 94 N VAL A 80 ? N VAL A 80 B 3 4 O SER A 81 ? O SER A 81 N ALA A 47 ? N ALA A 47 # _database_PDB_matrix.entry_id 2DI8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DI8 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 ARG 12 12 12 ARG ARG A . n A 1 13 ARG 13 13 13 ARG ARG A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 TYR 17 17 17 TYR TYR A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 SER 22 22 22 SER SER A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 PHE 27 27 27 PHE PHE A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 MET 29 29 29 MET MET A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 ASP 31 31 31 ASP ASP A . n A 1 32 PHE 32 32 32 PHE PHE A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 THR 36 36 36 THR THR A . n A 1 37 ARG 37 37 37 ARG ARG A . n A 1 38 ASP 38 38 38 ASP ASP A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 TYR 41 41 41 TYR TYR A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 SER 45 45 45 SER SER A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 PRO 51 51 51 PRO PRO A . n A 1 52 SER 52 52 52 SER SER A . n A 1 53 LYS 53 53 53 LYS LYS A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 GLN 57 57 57 GLN GLN A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 ASP 63 63 63 ASP ASP A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 THR 65 65 65 THR THR A . n A 1 66 CYS 66 66 66 CYS CYS A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 TYR 70 70 70 TYR TYR A . n A 1 71 PHE 71 71 71 PHE PHE A . n A 1 72 PRO 72 72 72 PRO PRO A . n A 1 73 THR 73 73 73 THR THR A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 PRO 75 75 75 PRO PRO A . n A 1 76 GLY 76 76 76 GLY GLY A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 ILE 79 79 79 ILE ILE A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 THR 82 82 82 THR THR A . n A 1 83 LYS 83 83 83 LYS LYS A . n A 1 84 PHE 84 84 84 PHE PHE A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 ASP 86 86 86 ASP ASP A . n A 1 87 GLU 87 87 87 GLU GLU A . n A 1 88 HIS 88 88 88 HIS HIS A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 PRO 90 90 90 PRO PRO A . n A 1 91 GLY 91 91 91 GLY GLY A . n A 1 92 SER 92 92 92 SER SER A . n A 1 93 PRO 93 93 93 PRO PRO A . n A 1 94 PHE 94 94 94 PHE PHE A . n A 1 95 THR 95 95 95 THR THR A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 GLY 100 100 100 GLY GLY A . n A 1 101 GLU 101 101 101 GLU GLU A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 ARG 103 103 103 ARG ARG A . n A 1 104 VAL 104 104 104 VAL VAL A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 SER 106 106 106 SER SER A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 PRO 108 108 108 PRO PRO A . n A 1 109 SER 109 109 109 SER SER A . n A 1 110 SER 110 110 110 SER SER A . n A 1 111 GLY 111 111 111 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-09-29 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 5 ? ? -38.86 147.39 2 1 VAL A 89 ? ? -48.30 156.88 3 1 PRO A 90 ? ? -69.77 83.29 4 1 GLU A 101 ? ? -54.53 173.84 5 1 ARG A 103 ? ? -42.53 153.42 6 2 SER A 3 ? ? -41.54 108.55 7 2 SER A 52 ? ? -170.02 138.90 8 2 PRO A 90 ? ? -69.78 81.12 9 3 ALA A 85 ? ? 71.99 45.84 10 3 VAL A 89 ? ? -47.20 156.55 11 3 PRO A 90 ? ? -69.76 81.85 12 3 SER A 106 ? ? -40.42 108.16 13 4 SER A 22 ? ? -97.00 -64.54 14 4 VAL A 89 ? ? -47.73 156.58 15 4 PRO A 90 ? ? -69.79 83.00 16 4 GLU A 101 ? ? -172.38 113.87 17 4 VAL A 104 ? ? -57.60 109.41 18 4 LYS A 105 ? ? -35.17 127.22 19 4 SER A 109 ? ? 34.79 45.75 20 5 PRO A 51 ? ? -69.76 1.79 21 5 VAL A 89 ? ? -48.03 157.18 22 5 PRO A 90 ? ? -69.75 82.97 23 5 GLU A 101 ? ? -35.83 143.11 24 6 SER A 2 ? ? -37.48 106.78 25 6 SER A 22 ? ? -104.51 -66.42 26 6 VAL A 89 ? ? -47.43 157.27 27 6 PRO A 90 ? ? -69.80 80.57 28 6 PRO A 108 ? ? -69.77 90.83 29 7 ALA A 47 ? ? -166.77 118.89 30 7 VAL A 89 ? ? -49.28 157.25 31 7 PRO A 90 ? ? -69.75 83.84 32 7 VAL A 104 ? ? -42.15 152.66 33 8 SER A 5 ? ? -123.39 -55.15 34 8 SER A 6 ? ? -38.81 157.44 35 8 SER A 22 ? ? -101.93 -62.44 36 8 PRO A 51 ? ? -69.79 1.39 37 8 VAL A 89 ? ? -45.41 156.50 38 8 PRO A 90 ? ? -69.75 79.93 39 8 VAL A 104 ? ? -44.19 105.99 40 8 SER A 110 ? ? 70.55 42.12 41 9 SER A 22 ? ? -110.08 -73.57 42 9 PRO A 90 ? ? -69.79 85.94 43 10 PRO A 51 ? ? -69.71 1.28 44 10 VAL A 89 ? ? -46.22 156.09 45 10 PRO A 90 ? ? -69.77 84.57 46 10 GLU A 101 ? ? -37.45 94.95 47 10 ARG A 103 ? ? -49.47 106.64 48 11 SER A 3 ? ? -64.87 80.03 49 11 SER A 22 ? ? -108.53 -61.10 50 11 VAL A 89 ? ? -45.93 156.40 51 11 PRO A 90 ? ? -69.75 80.29 52 11 SER A 99 ? ? -72.70 -71.78 53 11 VAL A 104 ? ? -45.51 151.16 54 11 SER A 106 ? ? -91.42 -64.90 55 12 SER A 22 ? ? -94.57 -69.46 56 12 GLU A 87 ? ? -160.03 114.96 57 12 PRO A 90 ? ? -69.77 87.16 58 12 ARG A 103 ? ? -170.37 111.02 59 12 VAL A 104 ? ? -46.20 155.53 60 12 SER A 109 ? ? -36.62 120.45 61 12 SER A 110 ? ? -64.61 95.31 62 13 SER A 6 ? ? -100.96 55.49 63 13 SER A 22 ? ? -94.70 -63.79 64 13 PHE A 27 ? ? 45.47 29.58 65 13 VAL A 89 ? ? -46.71 156.32 66 13 PRO A 90 ? ? -69.76 86.38 67 13 GLU A 101 ? ? -57.17 89.88 68 13 SER A 109 ? ? -37.79 111.99 69 14 ALA A 47 ? ? -164.58 108.18 70 14 ASP A 55 ? ? -49.61 152.38 71 14 VAL A 89 ? ? -44.99 155.80 72 14 PRO A 90 ? ? -69.81 86.30 73 14 ARG A 103 ? ? -43.93 168.00 74 14 VAL A 104 ? ? -44.48 101.66 75 14 SER A 106 ? ? -69.14 81.14 76 14 SER A 109 ? ? -129.46 -56.86 77 14 SER A 110 ? ? -69.62 98.44 78 15 SER A 22 ? ? -103.34 -62.37 79 15 MET A 29 ? ? -55.82 109.73 80 15 ALA A 47 ? ? -160.18 111.55 81 15 ALA A 85 ? ? 70.03 43.29 82 15 VAL A 89 ? ? -47.43 156.18 83 15 PRO A 90 ? ? -69.73 85.24 84 15 SER A 99 ? ? -57.67 -72.43 85 15 LYS A 105 ? ? -41.14 160.25 86 16 SER A 5 ? ? -57.12 171.52 87 16 SER A 22 ? ? -99.73 -60.77 88 16 PRO A 51 ? ? -69.85 1.86 89 16 THR A 73 ? ? -130.85 -42.36 90 16 VAL A 89 ? ? -44.24 156.03 91 16 PRO A 90 ? ? -69.79 88.59 92 16 PRO A 93 ? ? -69.75 -179.33 93 16 GLU A 101 ? ? -129.30 -55.54 94 16 PRO A 108 ? ? -69.79 2.83 95 17 ALA A 47 ? ? -161.47 118.69 96 17 VAL A 89 ? ? -46.24 156.26 97 17 PRO A 90 ? ? -69.74 82.82 98 17 ARG A 103 ? ? -162.67 106.71 99 17 SER A 106 ? ? -168.46 111.54 100 17 PRO A 108 ? ? -69.79 2.73 101 18 SER A 5 ? ? -42.85 164.82 102 18 SER A 6 ? ? 39.59 51.59 103 18 SER A 22 ? ? -100.25 -66.84 104 18 VAL A 89 ? ? -45.31 155.99 105 18 PRO A 90 ? ? -69.74 85.06 106 18 VAL A 104 ? ? -44.37 151.29 107 19 VAL A 89 ? ? -46.76 156.23 108 19 PRO A 90 ? ? -69.82 89.13 109 19 GLU A 101 ? ? -114.27 57.60 110 20 SER A 6 ? ? -44.07 164.16 111 20 ALA A 47 ? ? -162.12 108.38 112 20 ASP A 55 ? ? -49.44 152.38 113 20 VAL A 89 ? ? -44.44 156.00 114 20 PRO A 90 ? ? -69.77 87.86 115 20 GLU A 101 ? ? -37.28 107.16 116 20 ARG A 103 ? ? -36.34 123.79 117 20 VAL A 104 ? ? -46.22 151.86 #