data_2DIA # _entry.id 2DIA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DIA pdb_00002dia 10.2210/pdb2dia/pdb RCSB RCSB025446 ? ? WWPDB D_1000025446 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk003002600.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DIA _pdbx_database_status.recvd_initial_deposition_date 2006-03-29 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tomizawa, T.' 1 'Koshiba, S.' 2 'Watanabe, S.' 3 'Harada, T.' 4 'Kigawa, T.' 5 'Yokoyama, S.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title 'Solution structure of the 10th filamin domain from human Filamin-B' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tomizawa, T.' 1 ? primary 'Koshiba, S.' 2 ? primary 'Watanabe, S.' 3 ? primary 'Harada, T.' 4 ? primary 'Kigawa, T.' 5 ? primary 'Yokoyama, S.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Filamin-B _entity.formula_weight 11208.356 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'Filamin domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ;FLN-B, Beta-filamin, Actin-binding-like protein, Thyroid autoantigen, Truncated actin-binding protein, Truncated ABP, ABP-280 homolog, ABP-278, Filamin 3, Filamin homolog 1, Fh1 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGPFDPSKVVASGPGLEHGKVGEAGLLSVDCSEAGPGALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVPLTAGMY TLTMKYGGELVPHFPARVKVEPAVDTSSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGPFDPSKVVASGPGLEHGKVGEAGLLSVDCSEAGPGALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVPLTAGMY TLTMKYGGELVPHFPARVKVEPAVDTSSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk003002600.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 PRO n 1 9 PHE n 1 10 ASP n 1 11 PRO n 1 12 SER n 1 13 LYS n 1 14 VAL n 1 15 VAL n 1 16 ALA n 1 17 SER n 1 18 GLY n 1 19 PRO n 1 20 GLY n 1 21 LEU n 1 22 GLU n 1 23 HIS n 1 24 GLY n 1 25 LYS n 1 26 VAL n 1 27 GLY n 1 28 GLU n 1 29 ALA n 1 30 GLY n 1 31 LEU n 1 32 LEU n 1 33 SER n 1 34 VAL n 1 35 ASP n 1 36 CYS n 1 37 SER n 1 38 GLU n 1 39 ALA n 1 40 GLY n 1 41 PRO n 1 42 GLY n 1 43 ALA n 1 44 LEU n 1 45 GLY n 1 46 LEU n 1 47 GLU n 1 48 ALA n 1 49 VAL n 1 50 SER n 1 51 ASP n 1 52 SER n 1 53 GLY n 1 54 THR n 1 55 LYS n 1 56 ALA n 1 57 GLU n 1 58 VAL n 1 59 SER n 1 60 ILE n 1 61 GLN n 1 62 ASN n 1 63 ASN n 1 64 LYS n 1 65 ASP n 1 66 GLY n 1 67 THR n 1 68 TYR n 1 69 ALA n 1 70 VAL n 1 71 THR n 1 72 TYR n 1 73 VAL n 1 74 PRO n 1 75 LEU n 1 76 THR n 1 77 ALA n 1 78 GLY n 1 79 MET n 1 80 TYR n 1 81 THR n 1 82 LEU n 1 83 THR n 1 84 MET n 1 85 LYS n 1 86 TYR n 1 87 GLY n 1 88 GLY n 1 89 GLU n 1 90 LEU n 1 91 VAL n 1 92 PRO n 1 93 HIS n 1 94 PHE n 1 95 PRO n 1 96 ALA n 1 97 ARG n 1 98 VAL n 1 99 LYS n 1 100 VAL n 1 101 GLU n 1 102 PRO n 1 103 ALA n 1 104 VAL n 1 105 ASP n 1 106 THR n 1 107 SER n 1 108 SER n 1 109 GLY n 1 110 PRO n 1 111 SER n 1 112 SER n 1 113 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene FLNB _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P051205-11 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code FLNB_HUMAN _struct_ref.pdbx_db_accession O75369 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1016 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DIA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 107 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O75369 _struct_ref_seq.db_align_beg 1016 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1035 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 107 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DIA GLY A 1 ? UNP O75369 ? ? 'cloning artifact' 1 1 1 2DIA SER A 2 ? UNP O75369 ? ? 'cloning artifact' 2 2 1 2DIA SER A 3 ? UNP O75369 ? ? 'cloning artifact' 3 3 1 2DIA GLY A 4 ? UNP O75369 ? ? 'cloning artifact' 4 4 1 2DIA SER A 5 ? UNP O75369 ? ? 'cloning artifact' 5 5 1 2DIA SER A 6 ? UNP O75369 ? ? 'cloning artifact' 6 6 1 2DIA GLY A 7 ? UNP O75369 ? ? 'cloning artifact' 7 7 1 2DIA ASP A 35 ? UNP O75369 ASN 1157 'SEE REMARK 999' 35 8 1 2DIA SER A 108 ? UNP O75369 ? ? 'cloning artifact' 108 9 1 2DIA GLY A 109 ? UNP O75369 ? ? 'cloning artifact' 109 10 1 2DIA PRO A 110 ? UNP O75369 ? ? 'cloning artifact' 110 11 1 2DIA SER A 111 ? UNP O75369 ? ? 'cloning artifact' 111 12 1 2DIA SER A 112 ? UNP O75369 ? ? 'cloning artifact' 112 13 1 2DIA GLY A 113 ? UNP O75369 ? ? 'cloning artifact' 113 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.11mM Filamin domain U-15N,13C; 20mM d-Tris-HCl(pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DIA _pdbx_nmr_refine.method 'torsion angle dynamics, restrainted molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DIA _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DIA _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9742 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2DIA _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DIA _struct.title 'Solution structure of the 10th filamin domain from human Filamin-B' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DIA _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' _struct_keywords.text ;beta-sandwich, immunoglobulin-like fold, filamin domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, STRUCTURAL PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 10 ? SER A 12 ? ASP A 10 SER A 12 5 ? 3 HELX_P HELX_P2 2 GLY A 18 ? GLU A 22 ? GLY A 18 GLU A 22 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PHE 94 A . ? PHE 94 A PRO 95 A ? PRO 95 A 1 -0.02 2 PHE 94 A . ? PHE 94 A PRO 95 A ? PRO 95 A 2 -0.01 3 PHE 94 A . ? PHE 94 A PRO 95 A ? PRO 95 A 3 -0.02 4 PHE 94 A . ? PHE 94 A PRO 95 A ? PRO 95 A 4 0.04 5 PHE 94 A . ? PHE 94 A PRO 95 A ? PRO 95 A 5 0.02 6 PHE 94 A . ? PHE 94 A PRO 95 A ? PRO 95 A 6 0.00 7 PHE 94 A . ? PHE 94 A PRO 95 A ? PRO 95 A 7 0.03 8 PHE 94 A . ? PHE 94 A PRO 95 A ? PRO 95 A 8 0.00 9 PHE 94 A . ? PHE 94 A PRO 95 A ? PRO 95 A 9 0.02 10 PHE 94 A . ? PHE 94 A PRO 95 A ? PRO 95 A 10 0.02 11 PHE 94 A . ? PHE 94 A PRO 95 A ? PRO 95 A 11 -0.10 12 PHE 94 A . ? PHE 94 A PRO 95 A ? PRO 95 A 12 -0.01 13 PHE 94 A . ? PHE 94 A PRO 95 A ? PRO 95 A 13 0.01 14 PHE 94 A . ? PHE 94 A PRO 95 A ? PRO 95 A 14 -0.04 15 PHE 94 A . ? PHE 94 A PRO 95 A ? PRO 95 A 15 0.06 16 PHE 94 A . ? PHE 94 A PRO 95 A ? PRO 95 A 16 0.00 17 PHE 94 A . ? PHE 94 A PRO 95 A ? PRO 95 A 17 0.05 18 PHE 94 A . ? PHE 94 A PRO 95 A ? PRO 95 A 18 0.02 19 PHE 94 A . ? PHE 94 A PRO 95 A ? PRO 95 A 19 -0.01 20 PHE 94 A . ? PHE 94 A PRO 95 A ? PRO 95 A 20 0.06 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 5 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 14 ? SER A 17 ? VAL A 14 SER A 17 A 2 LEU A 32 ? CYS A 36 ? LEU A 32 CYS A 36 A 3 THR A 67 ? VAL A 73 ? THR A 67 VAL A 73 A 4 GLU A 57 ? ASN A 62 ? GLU A 57 ASN A 62 B 1 GLY A 24 ? LYS A 25 ? GLY A 24 LYS A 25 B 2 ALA A 96 ? GLU A 101 ? ALA A 96 GLU A 101 B 3 GLY A 78 ? TYR A 86 ? GLY A 78 TYR A 86 B 4 LEU A 44 ? SER A 50 ? LEU A 44 SER A 50 B 5 THR A 54 ? LYS A 55 ? THR A 54 LYS A 55 C 1 GLY A 24 ? LYS A 25 ? GLY A 24 LYS A 25 C 2 ALA A 96 ? GLU A 101 ? ALA A 96 GLU A 101 C 3 GLY A 78 ? TYR A 86 ? GLY A 78 TYR A 86 C 4 GLU A 89 ? LEU A 90 ? GLU A 89 LEU A 90 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 15 ? N VAL A 15 O ASP A 35 ? O ASP A 35 A 2 3 N VAL A 34 ? N VAL A 34 O TYR A 68 ? O TYR A 68 A 3 4 O ALA A 69 ? O ALA A 69 N GLN A 61 ? N GLN A 61 B 1 2 N GLY A 24 ? N GLY A 24 O GLU A 101 ? O GLU A 101 B 2 3 O VAL A 98 ? O VAL A 98 N TYR A 80 ? N TYR A 80 B 3 4 O LYS A 85 ? O LYS A 85 N GLY A 45 ? N GLY A 45 B 4 5 N SER A 50 ? N SER A 50 O THR A 54 ? O THR A 54 C 1 2 N GLY A 24 ? N GLY A 24 O GLU A 101 ? O GLU A 101 C 2 3 O VAL A 98 ? O VAL A 98 N TYR A 80 ? N TYR A 80 C 3 4 N TYR A 86 ? N TYR A 86 O GLU A 89 ? O GLU A 89 # _database_PDB_matrix.entry_id 2DIA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DIA _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 PHE 9 9 9 PHE PHE A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 PRO 11 11 11 PRO PRO A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 SER 17 17 17 SER SER A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 HIS 23 23 23 HIS HIS A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 CYS 36 36 36 CYS CYS A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 VAL 49 49 49 VAL VAL A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 SER 52 52 52 SER SER A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 THR 54 54 54 THR THR A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 ILE 60 60 60 ILE ILE A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 ASN 62 62 62 ASN ASN A . n A 1 63 ASN 63 63 63 ASN ASN A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 ASP 65 65 65 ASP ASP A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 THR 67 67 67 THR THR A . n A 1 68 TYR 68 68 68 TYR TYR A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 THR 71 71 71 THR THR A . n A 1 72 TYR 72 72 72 TYR TYR A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 PRO 74 74 74 PRO PRO A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 THR 76 76 76 THR THR A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 MET 79 79 79 MET MET A . n A 1 80 TYR 80 80 80 TYR TYR A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 THR 83 83 83 THR THR A . n A 1 84 MET 84 84 84 MET MET A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 TYR 86 86 86 TYR TYR A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 PRO 92 92 92 PRO PRO A . n A 1 93 HIS 93 93 93 HIS HIS A . n A 1 94 PHE 94 94 94 PHE PHE A . n A 1 95 PRO 95 95 95 PRO PRO A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 ARG 97 97 97 ARG ARG A . n A 1 98 VAL 98 98 98 VAL VAL A . n A 1 99 LYS 99 99 99 LYS LYS A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 GLU 101 101 101 GLU GLU A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 VAL 104 104 104 VAL VAL A . n A 1 105 ASP 105 105 105 ASP ASP A . n A 1 106 THR 106 106 106 THR THR A . n A 1 107 SER 107 107 107 SER SER A . n A 1 108 SER 108 108 108 SER SER A . n A 1 109 GLY 109 109 109 GLY GLY A . n A 1 110 PRO 110 110 110 PRO PRO A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 GLY 113 113 113 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-09-29 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 10 ? ? -172.34 119.15 2 1 SER A 37 ? ? -108.88 -67.21 3 1 PRO A 41 ? ? -69.75 -166.88 4 1 PRO A 92 ? ? -69.79 3.63 5 1 ALA A 103 ? ? -96.02 38.67 6 2 ASP A 10 ? ? -170.67 118.74 7 2 VAL A 26 ? ? -52.30 109.56 8 2 SER A 37 ? ? -95.22 -70.36 9 2 PRO A 41 ? ? -69.76 -163.81 10 2 ASP A 65 ? ? -84.19 39.52 11 2 PRO A 92 ? ? -69.71 4.43 12 2 ALA A 103 ? ? -84.47 40.08 13 3 ASP A 10 ? ? -162.25 115.30 14 3 SER A 37 ? ? -104.66 -65.38 15 3 PRO A 41 ? ? -69.83 -167.57 16 3 ASN A 62 ? ? -53.37 102.78 17 3 LYS A 64 ? ? -76.36 48.23 18 3 PRO A 92 ? ? -69.82 3.59 19 3 ALA A 103 ? ? -93.18 46.37 20 3 SER A 107 ? ? -42.90 166.15 21 3 SER A 111 ? ? -34.45 126.01 22 3 SER A 112 ? ? -172.44 123.03 23 4 ASP A 10 ? ? -168.07 117.50 24 4 SER A 37 ? ? -124.51 -69.40 25 4 PRO A 41 ? ? -69.74 -170.13 26 4 LYS A 64 ? ? -85.25 41.56 27 4 PRO A 92 ? ? -69.78 3.07 28 4 ALA A 103 ? ? -99.85 35.91 29 4 SER A 111 ? ? -60.04 98.91 30 5 SER A 3 ? ? -84.15 49.38 31 5 ASP A 10 ? ? -168.04 118.90 32 5 GLU A 28 ? ? -61.48 -178.63 33 5 PRO A 41 ? ? -69.75 -163.63 34 5 SER A 52 ? ? -88.63 31.63 35 5 PRO A 92 ? ? -69.71 4.89 36 5 ALA A 103 ? ? -83.97 44.69 37 5 PRO A 110 ? ? -69.73 -172.24 38 5 SER A 111 ? ? -63.72 96.64 39 5 SER A 112 ? ? 39.27 47.51 40 6 ASP A 10 ? ? -164.50 117.25 41 6 SER A 37 ? ? -124.59 -66.23 42 6 PRO A 41 ? ? -69.79 -171.09 43 6 LYS A 64 ? ? -94.75 33.30 44 6 PRO A 92 ? ? -69.72 3.67 45 6 ALA A 103 ? ? -88.19 46.69 46 6 SER A 112 ? ? -62.56 99.90 47 7 ASP A 10 ? ? -166.20 117.67 48 7 SER A 37 ? ? -102.60 -62.08 49 7 PRO A 41 ? ? -69.71 -164.62 50 7 PRO A 92 ? ? -69.78 3.96 51 7 ALA A 103 ? ? -82.39 47.97 52 7 SER A 107 ? ? -104.95 44.55 53 8 SER A 37 ? ? -132.05 -61.01 54 8 PRO A 41 ? ? -69.72 -175.22 55 8 LYS A 64 ? ? -90.72 42.27 56 8 PRO A 92 ? ? -69.83 3.63 57 8 ALA A 103 ? ? -107.71 50.63 58 8 SER A 112 ? ? 36.58 43.79 59 9 ASP A 10 ? ? -164.79 113.24 60 9 SER A 37 ? ? -128.97 -62.20 61 9 PRO A 41 ? ? -69.70 -177.35 62 9 ASP A 65 ? ? -82.83 39.09 63 9 PRO A 92 ? ? -69.77 4.31 64 9 ALA A 103 ? ? -91.13 36.48 65 10 SER A 6 ? ? 37.84 46.40 66 10 ASP A 10 ? ? -173.89 117.73 67 10 PRO A 41 ? ? -69.73 -170.72 68 10 PRO A 92 ? ? -69.76 4.41 69 10 SER A 108 ? ? -37.90 112.97 70 11 ASP A 10 ? ? -171.15 113.99 71 11 SER A 37 ? ? -107.39 -66.42 72 11 PRO A 41 ? ? -69.75 -176.50 73 11 SER A 52 ? ? -85.35 30.89 74 11 ASP A 65 ? ? -83.15 39.30 75 11 PRO A 74 ? ? -69.77 90.97 76 11 PRO A 92 ? ? -69.75 4.59 77 11 SER A 112 ? ? 34.86 42.15 78 12 SER A 2 ? ? -57.53 109.74 79 12 ASP A 10 ? ? -164.02 116.12 80 12 VAL A 26 ? ? -54.12 106.65 81 12 PRO A 41 ? ? -69.75 -168.74 82 12 SER A 52 ? ? -90.14 31.03 83 12 PRO A 92 ? ? -69.85 3.49 84 12 VAL A 104 ? ? -38.29 124.38 85 13 ASP A 10 ? ? -161.89 112.00 86 13 VAL A 26 ? ? -52.02 108.78 87 13 PRO A 41 ? ? -69.78 -177.76 88 13 ASP A 65 ? ? -86.81 33.57 89 13 PRO A 92 ? ? -69.82 4.44 90 13 VAL A 104 ? ? -98.13 49.00 91 13 SER A 111 ? ? -103.07 42.21 92 14 SER A 2 ? ? -174.20 129.70 93 14 VAL A 26 ? ? -52.45 107.67 94 14 SER A 37 ? ? -120.69 -51.52 95 14 PRO A 41 ? ? -69.77 -163.65 96 14 PRO A 92 ? ? -69.76 3.65 97 14 ALA A 103 ? ? -85.85 41.34 98 14 THR A 106 ? ? -38.38 141.89 99 14 PRO A 110 ? ? -69.79 90.87 100 14 SER A 111 ? ? 33.74 47.31 101 15 SER A 5 ? ? -56.62 171.21 102 15 SER A 37 ? ? -120.84 -71.24 103 15 PRO A 41 ? ? -69.70 -173.57 104 15 PRO A 92 ? ? -69.78 4.06 105 15 ALA A 103 ? ? -90.98 37.45 106 15 VAL A 104 ? ? -107.60 49.76 107 15 SER A 108 ? ? -42.22 108.19 108 16 ASP A 10 ? ? -160.30 114.43 109 16 VAL A 26 ? ? -53.19 107.77 110 16 PRO A 41 ? ? -69.81 -169.57 111 16 PRO A 92 ? ? -69.78 4.38 112 16 ALA A 103 ? ? -86.69 42.94 113 16 PRO A 110 ? ? -69.78 94.08 114 17 SER A 6 ? ? 36.69 39.59 115 17 PRO A 41 ? ? -69.79 -166.96 116 17 PRO A 92 ? ? -69.74 3.62 117 17 ALA A 103 ? ? -89.06 36.11 118 17 PRO A 110 ? ? -69.76 89.69 119 18 ASP A 10 ? ? -169.05 116.06 120 18 SER A 37 ? ? -104.80 -67.11 121 18 PRO A 41 ? ? -69.79 -164.31 122 18 PRO A 92 ? ? -69.78 4.45 123 18 ALA A 103 ? ? -85.06 48.20 124 18 ASP A 105 ? ? 71.25 48.35 125 19 SER A 37 ? ? -131.52 -74.66 126 19 PRO A 41 ? ? -69.78 -166.73 127 19 PRO A 92 ? ? -69.71 3.49 128 19 ALA A 103 ? ? -98.27 44.04 129 19 VAL A 104 ? ? -99.26 48.53 130 19 PRO A 110 ? ? -69.81 3.02 131 20 SER A 6 ? ? -50.43 174.78 132 20 ASP A 10 ? ? -169.44 115.46 133 20 VAL A 26 ? ? -52.53 108.00 134 20 GLU A 28 ? ? -67.69 -177.09 135 20 PRO A 41 ? ? -69.79 -170.94 136 20 LYS A 64 ? ? -88.68 43.94 137 20 PRO A 92 ? ? -69.76 3.43 138 20 ALA A 103 ? ? -109.65 48.15 139 20 THR A 106 ? ? -175.01 146.83 #