data_2DJ4 # _entry.id 2DJ4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DJ4 pdb_00002dj4 10.2210/pdb2dj4/pdb RCSB RCSB025473 ? ? WWPDB D_1000025473 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk003002600.6 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DJ4 _pdbx_database_status.recvd_initial_deposition_date 2006-03-31 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tomizawa, T.' 1 'Koshiba, S.' 2 'Watanabe, S.' 3 'Harada, T.' 4 'Kigawa, T.' 5 'Yokoyama, S.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title 'Solution structure of the 13th filamin domain from human Filamin-B' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tomizawa, T.' 1 ? primary 'Koshiba, S.' 2 ? primary 'Watanabe, S.' 3 ? primary 'Harada, T.' 4 ? primary 'Kigawa, T.' 5 ? primary 'Yokoyama, S.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Filamin-B _entity.formula_weight 11197.574 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'Filamin domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ;FLN-B, Beta-filamin, Actin-binding-like protein, Thyroid autoantigen, Truncated actin-binding protein, Truncated ABP, ABP-280 homolog, ABP-278, Filamin 3, Filamin homolog 1, Fh1 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGVVDPSKVKIAGPGLGSGVRARVLQSFTVDSSKAGLAPLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGP YMVSVKYADEEIPRSPFKVKVLPTYDAS ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGVVDPSKVKIAGPGLGSGVRARVLQSFTVDSSKAGLAPLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGP YMVSVKYADEEIPRSPFKVKVLPTYDAS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk003002600.6 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 VAL n 1 9 VAL n 1 10 ASP n 1 11 PRO n 1 12 SER n 1 13 LYS n 1 14 VAL n 1 15 LYS n 1 16 ILE n 1 17 ALA n 1 18 GLY n 1 19 PRO n 1 20 GLY n 1 21 LEU n 1 22 GLY n 1 23 SER n 1 24 GLY n 1 25 VAL n 1 26 ARG n 1 27 ALA n 1 28 ARG n 1 29 VAL n 1 30 LEU n 1 31 GLN n 1 32 SER n 1 33 PHE n 1 34 THR n 1 35 VAL n 1 36 ASP n 1 37 SER n 1 38 SER n 1 39 LYS n 1 40 ALA n 1 41 GLY n 1 42 LEU n 1 43 ALA n 1 44 PRO n 1 45 LEU n 1 46 GLU n 1 47 VAL n 1 48 ARG n 1 49 VAL n 1 50 LEU n 1 51 GLY n 1 52 PRO n 1 53 ARG n 1 54 GLY n 1 55 LEU n 1 56 VAL n 1 57 GLU n 1 58 PRO n 1 59 VAL n 1 60 ASN n 1 61 VAL n 1 62 VAL n 1 63 ASP n 1 64 ASN n 1 65 GLY n 1 66 ASP n 1 67 GLY n 1 68 THR n 1 69 HIS n 1 70 THR n 1 71 VAL n 1 72 THR n 1 73 TYR n 1 74 THR n 1 75 PRO n 1 76 SER n 1 77 GLN n 1 78 GLU n 1 79 GLY n 1 80 PRO n 1 81 TYR n 1 82 MET n 1 83 VAL n 1 84 SER n 1 85 VAL n 1 86 LYS n 1 87 TYR n 1 88 ALA n 1 89 ASP n 1 90 GLU n 1 91 GLU n 1 92 ILE n 1 93 PRO n 1 94 ARG n 1 95 SER n 1 96 PRO n 1 97 PHE n 1 98 LYS n 1 99 VAL n 1 100 LYS n 1 101 VAL n 1 102 LEU n 1 103 PRO n 1 104 THR n 1 105 TYR n 1 106 ASP n 1 107 ALA n 1 108 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene FLNB _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P060123-13 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code FLNB_HUMAN _struct_ref.pdbx_db_accession O75369 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1418 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DJ4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 108 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O75369 _struct_ref_seq.db_align_beg 1418 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1518 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 108 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DJ4 GLY A 1 ? UNP O75369 ? ? 'cloning artifact' 1 1 1 2DJ4 SER A 2 ? UNP O75369 ? ? 'cloning artifact' 2 2 1 2DJ4 SER A 3 ? UNP O75369 ? ? 'cloning artifact' 3 3 1 2DJ4 GLY A 4 ? UNP O75369 ? ? 'cloning artifact' 4 4 1 2DJ4 SER A 5 ? UNP O75369 ? ? 'cloning artifact' 5 5 1 2DJ4 SER A 6 ? UNP O75369 ? ? 'cloning artifact' 6 6 1 2DJ4 GLY A 7 ? UNP O75369 ? ? 'cloning artifact' 7 7 1 2DJ4 VAL A 61 ? UNP O75369 MET 1471 'SEE REMARK 999' 61 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.16mM Filamin domain U-15N,13C; 20mM d-Tris-HCl(pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE II' _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 900 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DJ4 _pdbx_nmr_refine.method 'torsion angle dynamics, restrainted molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DJ4 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DJ4 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection TopSpin 1.3 Bruker 1 processing NMRPipe 20060324 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9742 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2DJ4 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DJ4 _struct.title 'Solution structure of the 13th filamin domain from human Filamin-B' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DJ4 _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' _struct_keywords.text ;beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, National Project on Protein Structural and Functional Analyses, Structural Genomics, RIKEN Structural Genomics/Proteomics Initiative, RSGI, STRUCTURAL PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 1 -0.10 2 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 2 -0.01 3 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 3 -0.13 4 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 4 0.08 5 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 5 -0.08 6 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 6 -0.11 7 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 7 -0.12 8 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 8 0.02 9 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 9 -0.05 10 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 10 -0.02 11 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 11 -0.03 12 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 12 -0.05 13 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 13 0.11 14 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 14 -0.05 15 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 15 0.02 16 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 16 0.02 17 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 17 -0.02 18 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 18 -0.05 19 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 19 0.09 20 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 20 0.02 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 15 ? ALA A 17 ? LYS A 15 ALA A 17 A 2 GLN A 31 ? ASP A 36 ? GLN A 31 ASP A 36 A 3 THR A 68 ? TYR A 73 ? THR A 68 TYR A 73 A 4 VAL A 62 ? ASP A 63 ? VAL A 62 ASP A 63 B 1 VAL A 56 ? GLU A 57 ? VAL A 56 GLU A 57 B 2 LEU A 45 ? LEU A 50 ? LEU A 45 LEU A 50 B 3 GLY A 79 ? TYR A 87 ? GLY A 79 TYR A 87 B 4 PHE A 97 ? VAL A 101 ? PHE A 97 VAL A 101 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 15 ? N LYS A 15 O ASP A 36 ? O ASP A 36 A 2 3 N GLN A 31 ? N GLN A 31 O TYR A 73 ? O TYR A 73 A 3 4 O THR A 70 ? O THR A 70 N VAL A 62 ? N VAL A 62 B 1 2 O GLU A 57 ? O GLU A 57 N VAL A 49 ? N VAL A 49 B 2 3 N LEU A 50 ? N LEU A 50 O MET A 82 ? O MET A 82 B 3 4 N GLY A 79 ? N GLY A 79 O VAL A 101 ? O VAL A 101 # _database_PDB_matrix.entry_id 2DJ4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DJ4 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 PRO 11 11 11 PRO PRO A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 GLN 31 31 31 GLN GLN A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 THR 34 34 34 THR THR A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 ASP 36 36 36 ASP ASP A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 VAL 49 49 49 VAL VAL A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 PRO 52 52 52 PRO PRO A . n A 1 53 ARG 53 53 53 ARG ARG A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 PRO 58 58 58 PRO PRO A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 ASN 60 60 60 ASN ASN A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 ASP 63 63 63 ASP ASP A . n A 1 64 ASN 64 64 64 ASN ASN A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 THR 68 68 68 THR THR A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 THR 70 70 70 THR THR A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 THR 72 72 72 THR THR A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 PRO 75 75 75 PRO PRO A . n A 1 76 SER 76 76 76 SER SER A . n A 1 77 GLN 77 77 77 GLN GLN A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 PRO 80 80 80 PRO PRO A . n A 1 81 TYR 81 81 81 TYR TYR A . n A 1 82 MET 82 82 82 MET MET A . n A 1 83 VAL 83 83 83 VAL VAL A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 LYS 86 86 86 LYS LYS A . n A 1 87 TYR 87 87 87 TYR TYR A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 ASP 89 89 89 ASP ASP A . n A 1 90 GLU 90 90 90 GLU GLU A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 ILE 92 92 92 ILE ILE A . n A 1 93 PRO 93 93 93 PRO PRO A . n A 1 94 ARG 94 94 94 ARG ARG A . n A 1 95 SER 95 95 95 SER SER A . n A 1 96 PRO 96 96 96 PRO PRO A . n A 1 97 PHE 97 97 97 PHE PHE A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 VAL 101 101 101 VAL VAL A . n A 1 102 LEU 102 102 102 LEU LEU A . n A 1 103 PRO 103 103 103 PRO PRO A . n A 1 104 THR 104 104 104 THR THR A . n A 1 105 TYR 105 105 105 TYR TYR A . n A 1 106 ASP 106 106 106 ASP ASP A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 SER 108 108 108 SER SER A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-10-01 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 75 ? ? -69.73 97.12 2 1 PRO A 80 ? ? -69.78 88.07 3 1 GLU A 91 ? ? -54.54 109.50 4 1 ILE A 92 ? ? -47.52 152.95 5 1 PRO A 93 ? ? -69.74 3.93 6 1 PRO A 96 ? ? -69.70 -179.97 7 1 THR A 104 ? ? -34.70 -34.51 8 2 SER A 3 ? ? 36.77 42.26 9 2 PRO A 75 ? ? -69.74 90.45 10 2 PRO A 80 ? ? -69.83 86.59 11 2 ILE A 92 ? ? -49.24 153.20 12 2 PRO A 93 ? ? -69.65 4.41 13 2 THR A 104 ? ? -36.34 -30.42 14 2 ALA A 107 ? ? -111.66 78.73 15 3 SER A 6 ? ? -69.48 90.54 16 3 PRO A 75 ? ? -69.73 91.90 17 3 PRO A 80 ? ? -69.72 90.85 18 3 PRO A 93 ? ? -69.76 4.29 19 3 PRO A 96 ? ? -69.69 -179.41 20 3 THR A 104 ? ? -33.97 -36.21 21 4 PRO A 75 ? ? -69.77 98.12 22 4 PRO A 80 ? ? -69.78 92.76 23 4 ASP A 89 ? ? 74.22 31.74 24 4 PRO A 93 ? ? -69.80 4.47 25 4 THR A 104 ? ? -35.21 -31.75 26 5 PRO A 11 ? ? -69.76 1.49 27 5 PRO A 75 ? ? -69.76 92.92 28 5 PRO A 80 ? ? -69.76 89.13 29 5 TYR A 87 ? ? -160.44 110.54 30 5 GLU A 91 ? ? -54.39 108.38 31 5 ILE A 92 ? ? -46.90 153.02 32 5 PRO A 93 ? ? -69.74 4.68 33 5 PRO A 96 ? ? -69.72 -178.53 34 5 THR A 104 ? ? -34.83 -35.32 35 6 PRO A 75 ? ? -69.80 95.04 36 6 PRO A 80 ? ? -69.76 89.15 37 6 PRO A 93 ? ? -69.74 4.74 38 6 PRO A 96 ? ? -69.69 -179.92 39 6 THR A 104 ? ? -34.83 -32.19 40 6 TYR A 105 ? ? -90.05 38.71 41 6 ALA A 107 ? ? -108.41 78.53 42 7 PRO A 11 ? ? -69.74 0.78 43 7 PRO A 80 ? ? -69.78 93.93 44 7 ASP A 89 ? ? 73.47 31.40 45 7 GLU A 91 ? ? -53.36 107.90 46 7 ILE A 92 ? ? -45.93 153.00 47 7 PRO A 93 ? ? -69.75 4.31 48 7 THR A 104 ? ? -35.58 -32.15 49 7 ALA A 107 ? ? -79.87 43.45 50 8 PRO A 75 ? ? -69.73 91.39 51 8 PRO A 80 ? ? -69.72 86.19 52 8 TYR A 87 ? ? -160.18 109.47 53 8 ILE A 92 ? ? -49.41 153.03 54 8 PRO A 93 ? ? -69.74 3.85 55 8 THR A 104 ? ? -36.11 -30.82 56 8 ALA A 107 ? ? -81.91 44.03 57 9 VAL A 8 ? ? -33.97 135.73 58 9 PRO A 11 ? ? -69.81 0.37 59 9 PRO A 75 ? ? -69.75 94.59 60 9 PRO A 80 ? ? -69.78 90.13 61 9 ASP A 89 ? ? 71.04 33.50 62 9 PRO A 93 ? ? -69.68 4.33 63 9 THR A 104 ? ? -34.12 -33.40 64 9 ALA A 107 ? ? -68.02 81.87 65 10 PRO A 11 ? ? -69.76 0.30 66 10 PRO A 75 ? ? -69.81 94.39 67 10 PRO A 80 ? ? -69.65 93.90 68 10 PRO A 93 ? ? -69.66 5.83 69 10 THR A 104 ? ? -39.38 -27.48 70 10 TYR A 105 ? ? -82.25 38.54 71 10 ASP A 106 ? ? 36.44 29.37 72 11 PRO A 75 ? ? -69.75 94.52 73 11 SER A 76 ? ? -39.38 -27.20 74 11 PRO A 80 ? ? -69.71 81.66 75 11 PRO A 93 ? ? -69.74 6.20 76 11 THR A 104 ? ? -33.87 -35.05 77 12 SER A 6 ? ? -83.00 40.00 78 12 VAL A 8 ? ? -42.99 155.74 79 12 PRO A 75 ? ? -69.74 92.97 80 12 PRO A 80 ? ? -69.68 84.20 81 12 PRO A 93 ? ? -69.68 4.34 82 12 THR A 104 ? ? -34.73 -32.67 83 13 PRO A 75 ? ? -69.73 94.38 84 13 PRO A 80 ? ? -69.74 83.24 85 13 PRO A 93 ? ? -69.80 6.02 86 13 THR A 104 ? ? -33.96 -34.94 87 13 ALA A 107 ? ? -68.06 82.92 88 14 SER A 6 ? ? 34.65 42.14 89 14 PRO A 75 ? ? -69.74 99.01 90 14 PRO A 80 ? ? -69.80 92.49 91 14 ILE A 92 ? ? -49.50 152.86 92 14 PRO A 93 ? ? -69.83 4.11 93 14 THR A 104 ? ? -39.02 -25.66 94 14 ASP A 106 ? ? -164.53 113.27 95 14 ALA A 107 ? ? -104.68 43.68 96 15 SER A 3 ? ? -104.27 42.59 97 15 PRO A 75 ? ? -69.73 89.09 98 15 PRO A 80 ? ? -69.71 86.45 99 15 PRO A 93 ? ? -69.80 5.15 100 15 THR A 104 ? ? -34.61 -32.87 101 16 VAL A 8 ? ? -38.10 152.34 102 16 PRO A 11 ? ? -69.74 3.11 103 16 PRO A 75 ? ? -69.76 93.42 104 16 PRO A 80 ? ? -69.72 93.71 105 16 ASP A 89 ? ? 71.40 30.73 106 16 PRO A 93 ? ? -69.86 4.27 107 16 THR A 104 ? ? -39.60 -30.33 108 17 SER A 6 ? ? -88.70 42.15 109 17 PRO A 75 ? ? -69.82 93.99 110 17 PRO A 80 ? ? -69.98 91.24 111 17 PRO A 93 ? ? -69.82 4.89 112 17 THR A 104 ? ? -34.01 -33.25 113 17 TYR A 105 ? ? -81.82 48.09 114 17 ASP A 106 ? ? -90.19 35.93 115 17 ALA A 107 ? ? -81.23 41.63 116 18 SER A 6 ? ? -93.26 43.15 117 18 PRO A 75 ? ? -69.81 90.22 118 18 PRO A 80 ? ? -69.73 89.87 119 18 PRO A 93 ? ? -69.75 5.72 120 18 THR A 104 ? ? -35.24 -31.89 121 18 ALA A 107 ? ? -84.81 41.26 122 19 SER A 3 ? ? -45.42 163.93 123 19 PRO A 75 ? ? -69.79 93.30 124 19 PRO A 80 ? ? -69.84 83.45 125 19 PRO A 93 ? ? -69.77 4.69 126 19 PRO A 96 ? ? -69.80 -178.83 127 19 THR A 104 ? ? -34.12 -35.21 128 19 ALA A 107 ? ? -90.76 36.31 129 20 PRO A 11 ? ? -69.74 2.40 130 20 PRO A 75 ? ? -69.69 94.62 131 20 PRO A 80 ? ? -69.75 84.06 132 20 PRO A 93 ? ? -69.73 8.30 133 20 THR A 104 ? ? -33.87 -36.16 134 20 ALA A 107 ? ? -88.18 41.61 #