data_2DJJ # _entry.id 2DJJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DJJ pdb_00002djj 10.2210/pdb2djj/pdb RCSB RCSB025488 ? ? WWPDB D_1000025488 ? ? # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2006-04-25 _pdbx_database_PDB_obs_spr.pdb_id 2DJJ _pdbx_database_PDB_obs_spr.replace_pdb_id 1XTX _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2DJK _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DJJ _pdbx_database_status.recvd_initial_deposition_date 2006-04-04 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kato, K.' 1 'Yamaguchi, Y.' 2 # _citation.id primary _citation.title ;Solution structure of the a' domain of thermophilic fungal protein disulfide isomerase ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nakano, M.' 1 ? primary 'Maeno, A.' 2 ? primary 'Sasakawa, H.' 3 ? primary 'Yamaguchi, Y.' 4 ? primary 'Kikuchi, J.' 5 ? primary 'Asami, O.' 6 ? primary 'Kajino, T.' 7 ? primary 'Kato, K.' 8 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Protein disulfide-isomerase' _entity.formula_weight 13123.905 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 5.3.4.1 _entity.pdbx_mutation ? _entity.pdbx_fragment ;a' domain ; _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name PDI # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPLGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQ GFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKYKAA ; _entity_poly.pdbx_seq_one_letter_code_can ;GPLGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQ GFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKYKAA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 GLU n 1 7 GLY n 1 8 PRO n 1 9 VAL n 1 10 THR n 1 11 VAL n 1 12 VAL n 1 13 VAL n 1 14 ALA n 1 15 LYS n 1 16 ASN n 1 17 TYR n 1 18 ASN n 1 19 GLU n 1 20 ILE n 1 21 VAL n 1 22 LEU n 1 23 ASP n 1 24 ASP n 1 25 THR n 1 26 LYS n 1 27 ASP n 1 28 VAL n 1 29 LEU n 1 30 ILE n 1 31 GLU n 1 32 PHE n 1 33 TYR n 1 34 ALA n 1 35 PRO n 1 36 TRP n 1 37 CYS n 1 38 GLY n 1 39 HIS n 1 40 CYS n 1 41 LYS n 1 42 ALA n 1 43 LEU n 1 44 ALA n 1 45 PRO n 1 46 LYS n 1 47 TYR n 1 48 GLU n 1 49 GLU n 1 50 LEU n 1 51 GLY n 1 52 ALA n 1 53 LEU n 1 54 TYR n 1 55 ALA n 1 56 LYS n 1 57 SER n 1 58 GLU n 1 59 PHE n 1 60 LYS n 1 61 ASP n 1 62 ARG n 1 63 VAL n 1 64 VAL n 1 65 ILE n 1 66 ALA n 1 67 LYS n 1 68 VAL n 1 69 ASP n 1 70 ALA n 1 71 THR n 1 72 ALA n 1 73 ASN n 1 74 ASP n 1 75 VAL n 1 76 PRO n 1 77 ASP n 1 78 GLU n 1 79 ILE n 1 80 GLN n 1 81 GLY n 1 82 PHE n 1 83 PRO n 1 84 THR n 1 85 ILE n 1 86 LYS n 1 87 LEU n 1 88 TYR n 1 89 PRO n 1 90 ALA n 1 91 GLY n 1 92 ALA n 1 93 LYS n 1 94 GLY n 1 95 GLN n 1 96 PRO n 1 97 VAL n 1 98 THR n 1 99 TYR n 1 100 SER n 1 101 GLY n 1 102 SER n 1 103 ARG n 1 104 THR n 1 105 VAL n 1 106 GLU n 1 107 ASP n 1 108 LEU n 1 109 ILE n 1 110 LYS n 1 111 PHE n 1 112 ILE n 1 113 ALA n 1 114 GLU n 1 115 ASN n 1 116 GLY n 1 117 LYS n 1 118 TYR n 1 119 LYS n 1 120 ALA n 1 121 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Humicola _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Humicola insolens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 34413 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX6P-1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PDI_HUMIN _struct_ref.pdbx_db_accession P55059 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPTI KLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKYKAA ; _struct_ref.pdbx_align_begin 354 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DJJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 6 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 121 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P55059 _struct_ref_seq.db_align_beg 354 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 469 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 6 _struct_ref_seq.pdbx_auth_seq_align_end 121 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DJJ GLY A 1 ? UNP P55059 ? ? 'cloning artifact' 1 1 1 2DJJ PRO A 2 ? UNP P55059 ? ? 'cloning artifact' 2 2 1 2DJJ LEU A 3 ? UNP P55059 ? ? 'cloning artifact' 3 3 1 2DJJ GLY A 4 ? UNP P55059 ? ? 'cloning artifact' 4 4 1 2DJJ SER A 5 ? UNP P55059 ? ? 'cloning artifact' 5 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_13C-separated_NOESY 1 2 1 3D_15N-separated_NOESY 1 3 1 '2D NOESY' 2 4 1 '1H-15N HSQC' 3 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 310 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.16 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 ;1.0mM protein disulfide isomerase a' domain U-15N,13C; 10mM sodium phosphate buffer, 100mM KCl, 10mM ditiothreitol; 90% H2O, 10% D2O ; '90% H2O/10% D2O' 2 ;1.0mM protein disulfide isomerase a' domain; 10mM sodium phosphate buffer, 100mM KCl, 10mM ditiothreitol; 99% D2O ; '99% D2O' 3 ;0.3mM protein disulfide isomerase a' domain U-15N; 10mM sodium phosphate buffer, 100mM KCl, 10mM ditiothreitol, 10mg/ml Pf1 phage; 90% H2O, 10% D2O ; '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 ECA JEOL 920 ? 2 DRX Bruker 800 ? # _pdbx_nmr_refine.entry_id 2DJJ _pdbx_nmr_refine.method 'distance geometry simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DJJ _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DJJ _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 2.6 ? 1 collection Delta 4.3.3 ? 2 processing XwinNMR 2.6 ? 3 'data analysis' Sparky 3.1 'Goddard and Kneller' 4 'structure solution' CYANA 2.1 Guntert 5 refinement CNS 1.1 ? 6 # _exptl.entry_id 2DJJ _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DJJ _struct.title ;Solution structure of the a' domain of thermophilic fungal protein disulfide isomerase ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DJJ _struct_keywords.pdbx_keywords ISOMERASE _struct_keywords.text 'thioredoxin fold, ISOMERASE' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 39 ? ALA A 55 ? HIS A 39 ALA A 55 1 ? 17 HELX_P HELX_P2 2 THR A 104 ? ASN A 115 ? THR A 104 ASN A 115 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PHE 82 A . ? PHE 82 A PRO 83 A ? PRO 83 A 1 -0.18 2 PHE 82 A . ? PHE 82 A PRO 83 A ? PRO 83 A 2 -0.02 3 PHE 82 A . ? PHE 82 A PRO 83 A ? PRO 83 A 3 0.29 4 PHE 82 A . ? PHE 82 A PRO 83 A ? PRO 83 A 4 0.12 5 PHE 82 A . ? PHE 82 A PRO 83 A ? PRO 83 A 5 -0.04 6 PHE 82 A . ? PHE 82 A PRO 83 A ? PRO 83 A 6 -0.20 7 PHE 82 A . ? PHE 82 A PRO 83 A ? PRO 83 A 7 0.02 8 PHE 82 A . ? PHE 82 A PRO 83 A ? PRO 83 A 8 0.21 9 PHE 82 A . ? PHE 82 A PRO 83 A ? PRO 83 A 9 0.14 10 PHE 82 A . ? PHE 82 A PRO 83 A ? PRO 83 A 10 0.15 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 10 ? VAL A 11 ? THR A 10 VAL A 11 A 2 VAL A 64 ? ASP A 69 ? VAL A 64 ASP A 69 A 3 VAL A 28 ? TYR A 33 ? VAL A 28 TYR A 33 A 4 THR A 84 ? TYR A 88 ? THR A 84 TYR A 88 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 10 ? N THR A 10 O LYS A 67 ? O LYS A 67 A 2 3 O VAL A 64 ? O VAL A 64 N LEU A 29 ? N LEU A 29 A 3 4 N ILE A 30 ? N ILE A 30 O LYS A 86 ? O LYS A 86 # _database_PDB_matrix.entry_id 2DJJ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DJJ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 THR 10 10 10 THR THR A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 ASN 16 16 16 ASN ASN A . n A 1 17 TYR 17 17 17 TYR TYR A . n A 1 18 ASN 18 18 18 ASN ASN A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 ASP 23 23 23 ASP ASP A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 ILE 30 30 30 ILE ILE A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 PHE 32 32 32 PHE PHE A . n A 1 33 TYR 33 33 33 TYR TYR A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 PRO 35 35 35 PRO PRO A . n A 1 36 TRP 36 36 36 TRP TRP A . n A 1 37 CYS 37 37 37 CYS CYS A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 HIS 39 39 39 HIS HIS A . n A 1 40 CYS 40 40 40 CYS CYS A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 TYR 47 47 47 TYR TYR A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 TYR 54 54 54 TYR TYR A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 PHE 59 59 59 PHE PHE A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 ARG 62 62 62 ARG ARG A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 ASP 69 69 69 ASP ASP A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 THR 71 71 71 THR THR A . n A 1 72 ALA 72 72 72 ALA ALA A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 ASP 74 74 74 ASP ASP A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 PRO 76 76 76 PRO PRO A . n A 1 77 ASP 77 77 77 ASP ASP A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 ILE 79 79 79 ILE ILE A . n A 1 80 GLN 80 80 80 GLN GLN A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 PHE 82 82 82 PHE PHE A . n A 1 83 PRO 83 83 83 PRO PRO A . n A 1 84 THR 84 84 84 THR THR A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 LYS 86 86 86 LYS LYS A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 TYR 88 88 88 TYR TYR A . n A 1 89 PRO 89 89 89 PRO PRO A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 GLY 91 91 91 GLY GLY A . n A 1 92 ALA 92 92 92 ALA ALA A . n A 1 93 LYS 93 93 93 LYS LYS A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 GLN 95 95 95 GLN GLN A . n A 1 96 PRO 96 96 96 PRO PRO A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 THR 98 98 98 THR THR A . n A 1 99 TYR 99 99 99 TYR TYR A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 ARG 103 103 103 ARG ARG A . n A 1 104 THR 104 104 104 THR THR A . n A 1 105 VAL 105 105 105 VAL VAL A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 ASP 107 107 107 ASP ASP A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 ILE 109 109 109 ILE ILE A . n A 1 110 LYS 110 110 110 LYS LYS A . n A 1 111 PHE 111 111 111 PHE PHE A . n A 1 112 ILE 112 112 112 ILE ILE A . n A 1 113 ALA 113 113 113 ALA ALA A . n A 1 114 GLU 114 114 114 GLU GLU A . n A 1 115 ASN 115 115 115 ASN ASN A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 LYS 117 117 117 LYS LYS A . n A 1 118 TYR 118 118 118 TYR TYR A . n A 1 119 LYS 119 119 119 LYS LYS A . n A 1 120 ALA 120 120 120 ALA ALA A . n A 1 121 ALA 121 121 121 ALA ALA A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-04-25 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A PHE 111 ? ? H A ASN 115 ? ? 1.55 2 2 O A PHE 111 ? ? H A ASN 115 ? ? 1.57 3 3 O A PHE 111 ? ? H A ASN 115 ? ? 1.52 4 3 O A ASN 16 ? ? H A GLU 19 ? ? 1.54 5 4 O A PHE 111 ? ? H A ASN 115 ? ? 1.59 6 4 O A SER 102 ? ? H A THR 104 ? ? 1.60 7 5 O A ASN 16 ? ? H A GLU 19 ? ? 1.55 8 5 O A PHE 111 ? ? H A ASN 115 ? ? 1.59 9 6 O A PHE 111 ? ? H A ASN 115 ? ? 1.53 10 7 O A PHE 111 ? ? H A ASN 115 ? ? 1.53 11 7 O A ASN 16 ? ? H A GLU 19 ? ? 1.60 12 8 O A PHE 111 ? ? H A ASN 115 ? ? 1.45 13 8 O A ASN 16 ? ? H A GLU 19 ? ? 1.59 14 9 O A PHE 111 ? ? H A ASN 115 ? ? 1.58 15 9 O A ASN 16 ? ? H A GLU 19 ? ? 1.60 16 10 O A PHE 111 ? ? H A ASN 115 ? ? 1.56 17 10 O A ASN 16 ? ? H A GLU 19 ? ? 1.58 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 5 ? ? -173.72 -75.75 2 1 LYS A 56 ? ? -155.22 11.26 3 1 SER A 57 ? ? -109.81 -102.66 4 1 PHE A 59 ? ? -152.37 21.83 5 1 ARG A 62 ? ? -125.78 -142.36 6 1 PRO A 96 ? ? -44.09 -176.24 7 1 ARG A 103 ? ? -106.01 52.47 8 1 PHE A 111 ? ? -65.17 -77.62 9 1 ALA A 120 ? ? -62.94 98.75 10 2 PRO A 2 ? ? -52.19 175.93 11 2 LEU A 3 ? ? -154.65 -52.61 12 2 LYS A 56 ? ? -146.03 -43.38 13 2 SER A 57 ? ? -61.09 -149.99 14 2 ARG A 62 ? ? -85.03 -145.63 15 2 LYS A 86 ? ? -163.16 119.03 16 2 PRO A 89 ? ? -55.03 177.93 17 2 ALA A 90 ? ? -95.79 54.38 18 2 PRO A 96 ? ? -39.82 172.62 19 2 SER A 102 ? ? -159.86 -40.45 20 2 PHE A 111 ? ? -65.49 -77.47 21 3 GLU A 6 ? ? -178.81 111.71 22 3 LYS A 56 ? ? -143.13 -45.01 23 3 SER A 57 ? ? -59.95 -153.10 24 3 ARG A 62 ? ? -121.64 -147.06 25 3 VAL A 63 ? ? -48.86 107.45 26 3 GLU A 78 ? ? -66.78 95.69 27 3 PRO A 83 ? ? -71.52 -168.00 28 3 PRO A 89 ? ? -51.74 175.52 29 3 ALA A 90 ? ? -102.51 53.04 30 3 ALA A 92 ? ? -102.21 -81.14 31 3 GLN A 95 ? ? -144.31 57.47 32 3 PRO A 96 ? ? -44.77 177.05 33 3 ARG A 103 ? ? -106.17 51.53 34 3 PHE A 111 ? ? -64.03 -75.93 35 4 LEU A 3 ? ? 61.93 116.29 36 4 GLU A 6 ? ? -170.95 -173.74 37 4 LYS A 56 ? ? -139.80 -42.40 38 4 SER A 57 ? ? -57.36 -159.89 39 4 ARG A 62 ? ? -82.75 -143.66 40 4 PRO A 89 ? ? -56.38 177.83 41 4 ALA A 90 ? ? -95.17 54.11 42 4 PRO A 96 ? ? -39.03 175.06 43 4 SER A 102 ? ? 179.83 106.56 44 4 ARG A 103 ? ? -69.00 54.51 45 4 PHE A 111 ? ? -64.74 -77.39 46 5 VAL A 11 ? ? -67.09 92.48 47 5 GLU A 19 ? ? -121.00 -53.75 48 5 LYS A 56 ? ? -145.51 -42.49 49 5 SER A 57 ? ? -57.69 -156.12 50 5 GLU A 58 ? ? -79.33 23.77 51 5 PHE A 59 ? ? -149.05 26.23 52 5 ARG A 62 ? ? -85.28 -142.61 53 5 ASP A 74 ? ? -50.35 102.18 54 5 PHE A 82 ? ? 174.60 140.93 55 5 PRO A 83 ? ? -74.69 -161.17 56 5 PRO A 89 ? ? -55.60 176.79 57 5 ALA A 90 ? ? -94.57 53.75 58 5 PRO A 96 ? ? -41.89 -173.20 59 5 PHE A 111 ? ? -65.30 -78.26 60 6 PRO A 2 ? ? -69.98 63.13 61 6 SER A 5 ? ? -74.74 -168.29 62 6 LYS A 56 ? ? -140.82 -40.60 63 6 SER A 57 ? ? -57.16 -160.63 64 6 ARG A 62 ? ? -113.38 -141.33 65 6 PRO A 83 ? ? -79.60 -164.64 66 6 ALA A 90 ? ? -94.62 53.33 67 6 ALA A 92 ? ? -101.57 -78.45 68 6 GLN A 95 ? ? -149.82 59.34 69 6 PRO A 96 ? ? -42.99 -175.96 70 6 PHE A 111 ? ? -66.00 -77.30 71 7 TYR A 33 ? ? -161.19 -167.71 72 7 LYS A 56 ? ? -149.35 -43.20 73 7 SER A 57 ? ? -60.71 -151.43 74 7 GLU A 58 ? ? -79.45 20.38 75 7 ARG A 62 ? ? -81.89 -136.12 76 7 VAL A 63 ? ? -46.22 152.65 77 7 PRO A 89 ? ? -56.73 177.02 78 7 ALA A 90 ? ? -95.56 53.74 79 7 PRO A 96 ? ? -42.22 176.41 80 7 ARG A 103 ? ? 47.65 27.24 81 7 PHE A 111 ? ? -65.23 -77.98 82 8 SER A 5 ? ? -117.11 -80.25 83 8 GLU A 6 ? ? 177.57 44.13 84 8 VAL A 9 ? ? -62.60 -176.37 85 8 VAL A 11 ? ? -63.07 84.57 86 8 LYS A 56 ? ? -146.39 -42.35 87 8 SER A 57 ? ? -60.41 -147.12 88 8 PHE A 59 ? ? -140.07 17.14 89 8 ARG A 62 ? ? -115.21 -143.23 90 8 PRO A 83 ? ? -73.73 -168.94 91 8 PRO A 89 ? ? -57.43 177.32 92 8 ALA A 90 ? ? -96.60 53.88 93 8 PRO A 96 ? ? -46.38 -179.70 94 8 SER A 102 ? ? -153.43 -41.04 95 8 PHE A 111 ? ? -65.25 -78.40 96 9 CYS A 37 ? ? -68.09 96.24 97 9 LYS A 56 ? ? -149.77 -43.69 98 9 SER A 57 ? ? -61.80 -146.91 99 9 ARG A 62 ? ? -85.07 -145.87 100 9 THR A 71 ? ? -160.93 -21.35 101 9 ASN A 73 ? ? -113.98 -157.01 102 9 PRO A 89 ? ? -55.55 179.41 103 9 ALA A 90 ? ? -96.77 53.82 104 9 PRO A 96 ? ? -40.82 175.36 105 9 SER A 102 ? ? -177.53 111.64 106 9 PHE A 111 ? ? -65.11 -77.71 107 10 SER A 5 ? ? -176.08 -58.12 108 10 GLU A 6 ? ? 61.42 110.87 109 10 THR A 10 ? ? -61.61 82.05 110 10 LYS A 56 ? ? -143.41 -43.50 111 10 SER A 57 ? ? -59.20 -150.14 112 10 ARG A 62 ? ? -84.56 -145.65 113 10 ALA A 90 ? ? -90.83 55.19 114 10 PRO A 96 ? ? -39.93 -179.14 115 10 SER A 102 ? ? -158.32 -35.77 116 10 ARG A 103 ? ? 70.45 40.77 117 10 PHE A 111 ? ? -66.05 -78.70 #