data_2DLZ # _entry.id 2DLZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DLZ pdb_00002dlz 10.2210/pdb2dlz/pdb RCSB RCSB025570 ? ? WWPDB D_1000025570 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DLZ _pdbx_database_status.recvd_initial_deposition_date 2006-04-20 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Endo, H.' 1 'Hayashi, F.' 2 'Yoshida, M.' 3 'Yokoyama, S.' 4 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 5 # _citation.id primary _citation.title 'Solution structure of the SH2 domain of human protein vav-2' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Endo, H.' 1 ? primary 'Hayashi, F.' 2 ? primary 'Yoshida, M.' 3 ? primary 'Yokoyama, S.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Protein vav-2' _entity.formula_weight 13531.044 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'sh2 domain' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGSREIDYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNWIHITEAK KFDSLLELVEYYQCHSLKESFKQLDTTLKYPYSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGSREIDYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNWIHITEAK KFDSLLELVEYYQCHSLKESFKQLDTTLKYPYSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 SER n 1 9 ARG n 1 10 GLU n 1 11 ILE n 1 12 ASP n 1 13 TYR n 1 14 THR n 1 15 ALA n 1 16 TYR n 1 17 PRO n 1 18 TRP n 1 19 PHE n 1 20 ALA n 1 21 GLY n 1 22 ASN n 1 23 MET n 1 24 GLU n 1 25 ARG n 1 26 GLN n 1 27 GLN n 1 28 THR n 1 29 ASP n 1 30 ASN n 1 31 LEU n 1 32 LEU n 1 33 LYS n 1 34 SER n 1 35 HIS n 1 36 ALA n 1 37 SER n 1 38 GLY n 1 39 THR n 1 40 TYR n 1 41 LEU n 1 42 ILE n 1 43 ARG n 1 44 GLU n 1 45 ARG n 1 46 PRO n 1 47 ALA n 1 48 GLU n 1 49 ALA n 1 50 GLU n 1 51 ARG n 1 52 PHE n 1 53 ALA n 1 54 ILE n 1 55 SER n 1 56 ILE n 1 57 LYS n 1 58 PHE n 1 59 ASN n 1 60 ASP n 1 61 GLU n 1 62 VAL n 1 63 LYS n 1 64 HIS n 1 65 ILE n 1 66 LYS n 1 67 VAL n 1 68 VAL n 1 69 GLU n 1 70 LYS n 1 71 ASP n 1 72 ASN n 1 73 TRP n 1 74 ILE n 1 75 HIS n 1 76 ILE n 1 77 THR n 1 78 GLU n 1 79 ALA n 1 80 LYS n 1 81 LYS n 1 82 PHE n 1 83 ASP n 1 84 SER n 1 85 LEU n 1 86 LEU n 1 87 GLU n 1 88 LEU n 1 89 VAL n 1 90 GLU n 1 91 TYR n 1 92 TYR n 1 93 GLN n 1 94 CYS n 1 95 HIS n 1 96 SER n 1 97 LEU n 1 98 LYS n 1 99 GLU n 1 100 SER n 1 101 PHE n 1 102 LYS n 1 103 GLN n 1 104 LEU n 1 105 ASP n 1 106 THR n 1 107 THR n 1 108 LEU n 1 109 LYS n 1 110 TYR n 1 111 PRO n 1 112 TYR n 1 113 SER n 1 114 GLY n 1 115 PRO n 1 116 SER n 1 117 SER n 1 118 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene VAV2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050620-24 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VAV2_HUMAN _struct_ref.pdbx_db_accession P52735 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SREIDYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNWIHITEAKKFDSLLE LVEYYQCHSLKESFKQLDTTLKYPY ; _struct_ref.pdbx_align_begin 663 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DLZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 112 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P52735 _struct_ref_seq.db_align_beg 663 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 767 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 112 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DLZ GLY A 1 ? UNP P52735 ? ? 'cloning artifact' 1 1 1 2DLZ SER A 2 ? UNP P52735 ? ? 'cloning artifact' 2 2 1 2DLZ SER A 3 ? UNP P52735 ? ? 'cloning artifact' 3 3 1 2DLZ GLY A 4 ? UNP P52735 ? ? 'cloning artifact' 4 4 1 2DLZ SER A 5 ? UNP P52735 ? ? 'cloning artifact' 5 5 1 2DLZ SER A 6 ? UNP P52735 ? ? 'cloning artifact' 6 6 1 2DLZ GLY A 7 ? UNP P52735 ? ? 'cloning artifact' 7 7 1 2DLZ SER A 113 ? UNP P52735 ? ? 'cloning artifact' 113 8 1 2DLZ GLY A 114 ? UNP P52735 ? ? 'cloning artifact' 114 9 1 2DLZ PRO A 115 ? UNP P52735 ? ? 'cloning artifact' 115 10 1 2DLZ SER A 116 ? UNP P52735 ? ? 'cloning artifact' 116 11 1 2DLZ SER A 117 ? UNP P52735 ? ? 'cloning artifact' 117 12 1 2DLZ GLY A 118 ? UNP P52735 ? ? 'cloning artifact' 118 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.16mM 13C,15N-labeled protein; 20mM d-Tris-HCl(pH7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DLZ _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DLZ _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DLZ _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection VNMR 6.1C Varian 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.955 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2DLZ _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DLZ _struct.title 'Solution structure of the SH2 domain of human protein vav-2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DLZ _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text ;Rho family Guanine nucleotide exchange factor, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, SIGNALING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 12 ? TYR A 16 ? ASP A 12 TYR A 16 5 ? 5 HELX_P HELX_P2 2 GLU A 24 ? HIS A 35 ? GLU A 24 HIS A 35 1 ? 12 HELX_P HELX_P3 3 SER A 84 ? GLN A 93 ? SER A 84 GLN A 93 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 19 ? GLY A 21 ? PHE A 19 GLY A 21 A 2 TYR A 40 ? ARG A 43 ? TYR A 40 ARG A 43 A 3 PHE A 52 ? LYS A 57 ? PHE A 52 LYS A 57 A 4 VAL A 62 ? LYS A 70 ? VAL A 62 LYS A 70 A 5 TRP A 73 ? HIS A 75 ? TRP A 73 HIS A 75 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA A 20 ? N ALA A 20 O ILE A 42 ? O ILE A 42 A 2 3 N ARG A 43 ? N ARG A 43 O ALA A 53 ? O ALA A 53 A 3 4 N ILE A 54 ? N ILE A 54 O ILE A 65 ? O ILE A 65 A 4 5 N VAL A 68 ? N VAL A 68 O HIS A 75 ? O HIS A 75 # _database_PDB_matrix.entry_id 2DLZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DLZ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 ASP 12 12 12 ASP ASP A . n A 1 13 TYR 13 13 13 TYR TYR A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 TYR 16 16 16 TYR TYR A . n A 1 17 PRO 17 17 17 PRO PRO A . n A 1 18 TRP 18 18 18 TRP TRP A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 ASN 22 22 22 ASN ASN A . n A 1 23 MET 23 23 23 MET MET A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 GLN 27 27 27 GLN GLN A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 ASN 30 30 30 ASN ASN A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 HIS 35 35 35 HIS HIS A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 THR 39 39 39 THR THR A . n A 1 40 TYR 40 40 40 TYR TYR A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 ILE 42 42 42 ILE ILE A . n A 1 43 ARG 43 43 43 ARG ARG A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 PRO 46 46 46 PRO PRO A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 ARG 51 51 51 ARG ARG A . n A 1 52 PHE 52 52 52 PHE PHE A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 PHE 58 58 58 PHE PHE A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 HIS 64 64 64 HIS HIS A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 ASP 71 71 71 ASP ASP A . n A 1 72 ASN 72 72 72 ASN ASN A . n A 1 73 TRP 73 73 73 TRP TRP A . n A 1 74 ILE 74 74 74 ILE ILE A . n A 1 75 HIS 75 75 75 HIS HIS A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 THR 77 77 77 THR THR A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 LYS 80 80 80 LYS LYS A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 PHE 82 82 82 PHE PHE A . n A 1 83 ASP 83 83 83 ASP ASP A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 LEU 85 85 85 LEU LEU A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 GLU 87 87 87 GLU GLU A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 GLU 90 90 90 GLU GLU A . n A 1 91 TYR 91 91 91 TYR TYR A . n A 1 92 TYR 92 92 92 TYR TYR A . n A 1 93 GLN 93 93 93 GLN GLN A . n A 1 94 CYS 94 94 94 CYS CYS A . n A 1 95 HIS 95 95 95 HIS HIS A . n A 1 96 SER 96 96 96 SER SER A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 GLU 99 99 99 GLU GLU A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 PHE 101 101 101 PHE PHE A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 GLN 103 103 103 GLN GLN A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 ASP 105 105 105 ASP ASP A . n A 1 106 THR 106 106 106 THR THR A . n A 1 107 THR 107 107 107 THR THR A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 LYS 109 109 109 LYS LYS A . n A 1 110 TYR 110 110 110 TYR TYR A . n A 1 111 PRO 111 111 111 PRO PRO A . n A 1 112 TYR 112 112 112 TYR TYR A . n A 1 113 SER 113 113 113 SER SER A . n A 1 114 GLY 114 114 114 GLY GLY A . n A 1 115 PRO 115 115 115 PRO PRO A . n A 1 116 SER 116 116 116 SER SER A . n A 1 117 SER 117 117 117 SER SER A . n A 1 118 GLY 118 118 118 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-04-03 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 22 ? ? -94.00 54.54 2 1 MET A 23 ? ? -68.26 -178.67 3 1 HIS A 35 ? ? -53.57 -177.13 4 1 SER A 37 ? ? -84.83 35.08 5 1 PRO A 46 ? ? -69.81 84.25 6 1 THR A 77 ? ? 47.19 27.63 7 1 GLU A 78 ? ? 38.64 50.89 8 1 ASP A 83 ? ? -39.65 -35.90 9 1 LEU A 108 ? ? -37.79 103.14 10 1 LYS A 109 ? ? -94.76 -74.81 11 1 PRO A 111 ? ? -69.90 -176.35 12 1 PRO A 115 ? ? -69.85 94.53 13 2 ASN A 22 ? ? -67.18 78.83 14 2 HIS A 35 ? ? -59.28 -179.33 15 2 ARG A 51 ? ? -94.81 -64.18 16 2 THR A 77 ? ? 44.22 25.24 17 2 SER A 84 ? ? -175.21 -177.27 18 2 LEU A 108 ? ? -42.23 96.64 19 2 LYS A 109 ? ? -87.71 -73.47 20 2 PRO A 111 ? ? -69.79 -165.21 21 3 HIS A 35 ? ? -58.35 -176.72 22 3 ASP A 60 ? ? 49.33 26.38 23 3 THR A 77 ? ? 44.47 25.60 24 3 SER A 84 ? ? -172.74 -176.89 25 3 LEU A 108 ? ? -46.36 97.66 26 3 LYS A 109 ? ? -85.74 -70.16 27 3 PRO A 111 ? ? -69.75 -163.75 28 4 ARG A 9 ? ? -58.00 96.18 29 4 HIS A 35 ? ? -52.34 174.66 30 4 PRO A 46 ? ? -69.79 85.17 31 4 ALA A 49 ? ? -60.20 -73.10 32 4 THR A 77 ? ? 44.38 25.34 33 4 LEU A 108 ? ? -34.53 106.53 34 4 LYS A 109 ? ? -98.05 -75.03 35 4 PRO A 111 ? ? -69.73 -175.95 36 4 SER A 113 ? ? -96.85 -75.18 37 4 PRO A 115 ? ? -69.78 86.55 38 5 ASN A 22 ? ? 33.70 54.64 39 5 HIS A 35 ? ? -68.07 -178.38 40 5 ALA A 49 ? ? -98.18 -64.63 41 5 GLU A 50 ? ? -67.94 96.26 42 5 THR A 77 ? ? 46.51 25.12 43 5 LEU A 108 ? ? -46.54 91.31 44 5 PRO A 111 ? ? -69.71 -168.49 45 5 SER A 113 ? ? -68.02 72.12 46 6 SER A 8 ? ? 38.61 39.20 47 6 ILE A 11 ? ? -34.62 130.59 48 6 ASN A 22 ? ? 33.74 55.04 49 6 SER A 37 ? ? -87.62 31.95 50 6 ALA A 49 ? ? -129.38 -72.70 51 6 THR A 77 ? ? 42.69 25.37 52 6 LEU A 108 ? ? -53.21 99.95 53 6 LYS A 109 ? ? -91.97 -72.05 54 6 PRO A 111 ? ? -69.74 -166.42 55 6 SER A 116 ? ? -36.46 97.86 56 7 ASN A 22 ? ? -61.46 76.97 57 7 HIS A 35 ? ? -54.40 179.87 58 7 GLU A 50 ? ? -37.52 148.70 59 7 THR A 77 ? ? 32.02 35.49 60 7 GLU A 78 ? ? 34.66 50.55 61 7 SER A 84 ? ? -174.97 -175.68 62 7 LEU A 108 ? ? -40.80 102.64 63 7 LYS A 109 ? ? -91.02 -74.56 64 7 PRO A 111 ? ? -69.61 -163.79 65 7 SER A 113 ? ? -65.40 79.33 66 7 SER A 116 ? ? -131.74 -45.43 67 7 SER A 117 ? ? -64.56 93.69 68 8 SER A 6 ? ? -48.66 166.48 69 8 ALA A 20 ? ? -92.71 -62.82 70 8 ASN A 22 ? ? 34.29 52.99 71 8 HIS A 35 ? ? -61.33 -175.50 72 8 PRO A 46 ? ? -69.77 97.41 73 8 ARG A 51 ? ? -131.51 -46.22 74 8 ASN A 59 ? ? 71.91 41.81 75 8 THR A 77 ? ? 44.67 25.20 76 8 LEU A 108 ? ? -34.41 105.78 77 8 LYS A 109 ? ? -97.67 -74.97 78 8 PRO A 111 ? ? -69.71 -176.66 79 8 SER A 113 ? ? -98.35 -74.91 80 8 PRO A 115 ? ? -69.80 80.72 81 9 ARG A 9 ? ? -88.83 43.34 82 9 HIS A 35 ? ? -61.67 -176.21 83 9 SER A 37 ? ? -84.93 31.31 84 9 ALA A 49 ? ? -48.59 -72.33 85 9 ALA A 79 ? ? -97.25 -72.06 86 9 LEU A 108 ? ? -52.01 100.82 87 9 LYS A 109 ? ? -94.16 -68.42 88 9 PRO A 111 ? ? -69.80 -163.70 89 10 SER A 2 ? ? -37.09 148.75 90 10 HIS A 35 ? ? -61.56 -179.45 91 10 GLU A 50 ? ? -65.40 81.95 92 10 ASN A 59 ? ? 72.78 34.01 93 10 THR A 77 ? ? 30.66 37.42 94 10 GLU A 78 ? ? 37.65 49.38 95 10 SER A 84 ? ? -171.26 -177.57 96 10 LEU A 108 ? ? -44.41 104.32 97 10 LYS A 109 ? ? -94.35 -74.34 98 10 PRO A 111 ? ? -69.72 -171.31 99 10 SER A 117 ? ? -83.99 34.83 100 11 ASP A 12 ? ? -68.50 92.94 101 11 ALA A 47 ? ? -174.54 137.32 102 11 THR A 77 ? ? 31.86 36.40 103 11 GLU A 78 ? ? 34.33 49.06 104 11 LEU A 108 ? ? -39.65 102.62 105 11 LYS A 109 ? ? -92.41 -74.07 106 11 PRO A 111 ? ? -69.78 -163.69 107 11 PRO A 115 ? ? -69.74 90.40 108 12 HIS A 35 ? ? -57.04 177.75 109 12 GLU A 48 ? ? -80.48 -72.10 110 12 THR A 77 ? ? 46.45 24.92 111 12 SER A 84 ? ? -173.92 -179.14 112 12 LEU A 108 ? ? -41.54 105.36 113 12 LYS A 109 ? ? -95.25 -66.29 114 12 PRO A 111 ? ? -69.82 -168.55 115 12 SER A 113 ? ? -64.86 -172.97 116 12 PRO A 115 ? ? -69.78 97.78 117 13 ASN A 22 ? ? 36.71 45.48 118 13 MET A 23 ? ? -69.77 -176.99 119 13 HIS A 35 ? ? -51.01 179.06 120 13 SER A 37 ? ? -86.74 34.96 121 13 ALA A 47 ? ? -170.32 -178.86 122 13 ALA A 49 ? ? -107.64 -60.03 123 13 GLU A 50 ? ? -66.54 84.39 124 13 ASN A 59 ? ? 73.53 44.39 125 13 ASN A 72 ? ? 70.24 31.53 126 13 THR A 77 ? ? 32.01 35.81 127 13 LYS A 80 ? ? -174.61 132.92 128 13 ASP A 83 ? ? -36.77 -37.18 129 13 LEU A 108 ? ? -34.84 102.59 130 13 LYS A 109 ? ? -90.56 -73.85 131 13 PRO A 111 ? ? -69.83 -169.76 132 14 ALA A 20 ? ? -98.17 -63.41 133 14 ASN A 22 ? ? 33.22 54.31 134 14 PRO A 46 ? ? -69.73 -169.53 135 14 ALA A 47 ? ? -49.59 89.04 136 14 THR A 77 ? ? 38.56 27.66 137 14 LEU A 108 ? ? -45.07 107.75 138 14 LYS A 109 ? ? -100.08 -71.16 139 14 PRO A 111 ? ? -69.69 -172.73 140 14 SER A 117 ? ? -89.26 32.62 141 15 SER A 6 ? ? -59.17 175.72 142 15 ASN A 22 ? ? -94.48 54.66 143 15 LYS A 33 ? ? -35.74 -30.85 144 15 HIS A 35 ? ? -46.14 171.00 145 15 SER A 37 ? ? -87.18 30.95 146 15 PRO A 46 ? ? -69.82 91.11 147 15 THR A 77 ? ? 42.86 25.11 148 15 LEU A 108 ? ? -34.56 103.74 149 15 LYS A 109 ? ? -93.05 -74.02 150 15 PRO A 111 ? ? -69.77 -166.42 151 15 SER A 117 ? ? 37.04 39.04 152 16 ALA A 20 ? ? -94.92 -61.22 153 16 HIS A 35 ? ? -62.23 -177.16 154 16 PRO A 46 ? ? -69.79 94.37 155 16 THR A 77 ? ? 29.81 38.82 156 16 GLU A 78 ? ? 36.48 50.14 157 16 LEU A 108 ? ? -33.93 102.46 158 16 LYS A 109 ? ? -91.16 -74.14 159 16 PRO A 111 ? ? -69.76 -169.66 160 17 GLU A 10 ? ? -34.61 149.66 161 17 ASN A 22 ? ? 39.73 48.56 162 17 HIS A 35 ? ? -59.20 -176.86 163 17 PRO A 46 ? ? -69.74 86.42 164 17 ALA A 49 ? ? -98.75 -70.41 165 17 GLU A 50 ? ? -66.77 88.10 166 17 ASP A 60 ? ? 48.74 25.17 167 17 THR A 77 ? ? 48.42 25.05 168 17 ALA A 79 ? ? -88.47 -75.03 169 17 ASP A 83 ? ? -34.29 -37.39 170 17 LEU A 108 ? ? -38.98 112.15 171 17 LYS A 109 ? ? -104.55 -74.07 172 17 PRO A 111 ? ? -69.74 -173.13 173 18 SER A 2 ? ? 34.67 41.53 174 18 ARG A 9 ? ? -98.12 41.07 175 18 ASN A 22 ? ? -63.54 76.58 176 18 HIS A 35 ? ? -53.67 -175.02 177 18 ALA A 47 ? ? -34.94 -35.69 178 18 ALA A 49 ? ? -71.92 -75.02 179 18 PHE A 58 ? ? -173.33 145.68 180 18 ASP A 60 ? ? 44.92 28.43 181 18 THR A 77 ? ? 39.61 26.24 182 18 ASP A 83 ? ? -36.34 -33.01 183 18 SER A 84 ? ? -174.73 -176.25 184 18 LEU A 108 ? ? -34.36 102.86 185 18 LYS A 109 ? ? -88.90 -75.09 186 18 PRO A 111 ? ? -69.78 -163.55 187 18 SER A 113 ? ? -66.71 89.96 188 18 SER A 116 ? ? -83.09 41.15 189 19 ASN A 22 ? ? 34.09 42.45 190 19 HIS A 35 ? ? -48.62 178.27 191 19 SER A 37 ? ? -88.15 36.45 192 19 PRO A 46 ? ? -69.73 -163.00 193 19 ALA A 47 ? ? 75.03 43.93 194 19 GLU A 48 ? ? 32.56 36.12 195 19 GLU A 50 ? ? -31.31 103.84 196 19 ASN A 59 ? ? 74.27 31.03 197 19 THR A 77 ? ? 30.86 36.93 198 19 GLU A 78 ? ? 37.02 52.13 199 19 LYS A 80 ? ? -174.33 124.94 200 19 SER A 84 ? ? -175.51 -175.00 201 19 GLN A 93 ? ? -48.87 -19.83 202 19 LEU A 108 ? ? -34.93 105.33 203 19 LYS A 109 ? ? -96.25 -74.17 204 19 PRO A 111 ? ? -69.65 -176.06 205 19 PRO A 115 ? ? -69.68 0.42 206 20 SER A 2 ? ? -64.72 94.60 207 20 ARG A 9 ? ? -63.18 94.80 208 20 HIS A 35 ? ? -60.72 -177.57 209 20 GLU A 48 ? ? -80.23 -71.01 210 20 THR A 77 ? ? 33.92 32.00 211 20 LEU A 108 ? ? -34.24 100.78 212 20 LYS A 109 ? ? -89.31 -73.31 213 20 PRO A 111 ? ? -69.83 -169.03 214 20 SER A 113 ? ? -35.23 -75.93 215 20 SER A 117 ? ? -61.47 93.25 #