data_2DMC # _entry.id 2DMC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DMC pdb_00002dmc 10.2210/pdb2dmc/pdb RCSB RCSB025583 ? ? WWPDB D_1000025583 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk003002600.9 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DMC _pdbx_database_status.recvd_initial_deposition_date 2006-04-20 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tomizawa, T.' 1 'Koshiba, S.' 2 'Watanabe, S.' 3 'Harada, T.' 4 'Kigawa, T.' 5 'Yokoyama, S.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title 'Solution structure of the 18th Filamin domain from human Filamin-B' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tomizawa, T.' 1 ? primary 'Koshiba, S.' 2 ? primary 'Watanabe, S.' 3 ? primary 'Harada, T.' 4 ? primary 'Kigawa, T.' 5 ? primary 'Yokoyama, S.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Filamin-B _entity.formula_weight 12015.431 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'Filamin domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ;FLN-B, Beta-filamin, Actin-binding-like protein, Thyroid autoantigen, Truncated actin-binding protein, Truncated ABP, ABP- 280 homolog, ABP-278, Filamin 3, Filamin homolog 1, Fh1 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGIPGSPFTAKITDDSRRCSQVKLGSAADFLLDISETDLSSLTASIKAPSGRDEPCLLKRLPNNHIGISFIPREV GEHLVSIKKNGNHVANSPVSIMVVQSEIGDSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGIPGSPFTAKITDDSRRCSQVKLGSAADFLLDISETDLSSLTASIKAPSGRDEPCLLKRLPNNHIGISFIPREV GEHLVSIKKNGNHVANSPVSIMVVQSEIGDSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk003002600.9 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 ILE n 1 9 PRO n 1 10 GLY n 1 11 SER n 1 12 PRO n 1 13 PHE n 1 14 THR n 1 15 ALA n 1 16 LYS n 1 17 ILE n 1 18 THR n 1 19 ASP n 1 20 ASP n 1 21 SER n 1 22 ARG n 1 23 ARG n 1 24 CYS n 1 25 SER n 1 26 GLN n 1 27 VAL n 1 28 LYS n 1 29 LEU n 1 30 GLY n 1 31 SER n 1 32 ALA n 1 33 ALA n 1 34 ASP n 1 35 PHE n 1 36 LEU n 1 37 LEU n 1 38 ASP n 1 39 ILE n 1 40 SER n 1 41 GLU n 1 42 THR n 1 43 ASP n 1 44 LEU n 1 45 SER n 1 46 SER n 1 47 LEU n 1 48 THR n 1 49 ALA n 1 50 SER n 1 51 ILE n 1 52 LYS n 1 53 ALA n 1 54 PRO n 1 55 SER n 1 56 GLY n 1 57 ARG n 1 58 ASP n 1 59 GLU n 1 60 PRO n 1 61 CYS n 1 62 LEU n 1 63 LEU n 1 64 LYS n 1 65 ARG n 1 66 LEU n 1 67 PRO n 1 68 ASN n 1 69 ASN n 1 70 HIS n 1 71 ILE n 1 72 GLY n 1 73 ILE n 1 74 SER n 1 75 PHE n 1 76 ILE n 1 77 PRO n 1 78 ARG n 1 79 GLU n 1 80 VAL n 1 81 GLY n 1 82 GLU n 1 83 HIS n 1 84 LEU n 1 85 VAL n 1 86 SER n 1 87 ILE n 1 88 LYS n 1 89 LYS n 1 90 ASN n 1 91 GLY n 1 92 ASN n 1 93 HIS n 1 94 VAL n 1 95 ALA n 1 96 ASN n 1 97 SER n 1 98 PRO n 1 99 VAL n 1 100 SER n 1 101 ILE n 1 102 MET n 1 103 VAL n 1 104 VAL n 1 105 GLN n 1 106 SER n 1 107 GLU n 1 108 ILE n 1 109 GLY n 1 110 ASP n 1 111 SER n 1 112 GLY n 1 113 PRO n 1 114 SER n 1 115 SER n 1 116 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene FLNB _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P051205-16 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code FLNB_HUMAN _struct_ref.pdbx_db_accession O75369 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1899 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DMC _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 110 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O75369 _struct_ref_seq.db_align_beg 1899 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 2001 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 110 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DMC GLY A 1 ? UNP O75369 ? ? 'cloning artifact' 1 1 1 2DMC SER A 2 ? UNP O75369 ? ? 'cloning artifact' 2 2 1 2DMC SER A 3 ? UNP O75369 ? ? 'cloning artifact' 3 3 1 2DMC GLY A 4 ? UNP O75369 ? ? 'cloning artifact' 4 4 1 2DMC SER A 5 ? UNP O75369 ? ? 'cloning artifact' 5 5 1 2DMC SER A 6 ? UNP O75369 ? ? 'cloning artifact' 6 6 1 2DMC GLY A 7 ? UNP O75369 ? ? 'cloning artifact' 7 7 1 2DMC SER A 111 ? UNP O75369 ? ? 'cloning artifact' 111 8 1 2DMC GLY A 112 ? UNP O75369 ? ? 'cloning artifact' 112 9 1 2DMC PRO A 113 ? UNP O75369 ? ? 'cloning artifact' 113 10 1 2DMC SER A 114 ? UNP O75369 ? ? 'cloning artifact' 114 11 1 2DMC SER A 115 ? UNP O75369 ? ? 'cloning artifact' 115 12 1 2DMC GLY A 116 ? UNP O75369 ? ? 'cloning artifact' 116 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.14mM Filamin domain U-15N, 13C; 20mM d-Tris-HCl (pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE II' _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 900 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DMC _pdbx_nmr_refine.method 'torsion angle dynamics, restrainted molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DMC _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DMC _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection TopSpin 1.3 Bruker 1 processing NMRPipe 20060324 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9742 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2DMC _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DMC _struct.title 'Solution structure of the 18th Filamin domain from human Filamin-B' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DMC _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' _struct_keywords.text ;beta-sandwich, immunoglobulin-like fold, filamin domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, STRUCTURAL PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 97 A . ? SER 97 A PRO 98 A ? PRO 98 A 1 -0.07 2 SER 97 A . ? SER 97 A PRO 98 A ? PRO 98 A 2 0.08 3 SER 97 A . ? SER 97 A PRO 98 A ? PRO 98 A 3 -0.01 4 SER 97 A . ? SER 97 A PRO 98 A ? PRO 98 A 4 -0.05 5 SER 97 A . ? SER 97 A PRO 98 A ? PRO 98 A 5 0.05 6 SER 97 A . ? SER 97 A PRO 98 A ? PRO 98 A 6 -0.03 7 SER 97 A . ? SER 97 A PRO 98 A ? PRO 98 A 7 -0.03 8 SER 97 A . ? SER 97 A PRO 98 A ? PRO 98 A 8 0.06 9 SER 97 A . ? SER 97 A PRO 98 A ? PRO 98 A 9 0.02 10 SER 97 A . ? SER 97 A PRO 98 A ? PRO 98 A 10 -0.04 11 SER 97 A . ? SER 97 A PRO 98 A ? PRO 98 A 11 0.05 12 SER 97 A . ? SER 97 A PRO 98 A ? PRO 98 A 12 0.02 13 SER 97 A . ? SER 97 A PRO 98 A ? PRO 98 A 13 -0.13 14 SER 97 A . ? SER 97 A PRO 98 A ? PRO 98 A 14 0.02 15 SER 97 A . ? SER 97 A PRO 98 A ? PRO 98 A 15 -0.03 16 SER 97 A . ? SER 97 A PRO 98 A ? PRO 98 A 16 0.00 17 SER 97 A . ? SER 97 A PRO 98 A ? PRO 98 A 17 -0.02 18 SER 97 A . ? SER 97 A PRO 98 A ? PRO 98 A 18 0.07 19 SER 97 A . ? SER 97 A PRO 98 A ? PRO 98 A 19 -0.11 20 SER 97 A . ? SER 97 A PRO 98 A ? PRO 98 A 20 0.05 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 33 ? LEU A 36 ? ALA A 33 LEU A 36 A 2 HIS A 70 ? PHE A 75 ? HIS A 70 PHE A 75 A 3 CYS A 61 ? LEU A 66 ? CYS A 61 LEU A 66 B 1 SER A 50 ? LYS A 52 ? SER A 50 LYS A 52 B 2 GLY A 81 ? SER A 86 ? GLY A 81 SER A 86 B 3 VAL A 99 ? VAL A 103 ? VAL A 99 VAL A 103 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA A 33 ? N ALA A 33 O PHE A 75 ? O PHE A 75 A 2 3 O SER A 74 ? O SER A 74 N LEU A 62 ? N LEU A 62 B 1 2 N SER A 50 ? N SER A 50 O SER A 86 ? O SER A 86 B 2 3 N VAL A 85 ? N VAL A 85 O VAL A 99 ? O VAL A 99 # _database_PDB_matrix.entry_id 2DMC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DMC _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 PHE 13 13 13 PHE PHE A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 ASP 19 19 19 ASP ASP A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 ARG 23 23 23 ARG ARG A . n A 1 24 CYS 24 24 24 CYS CYS A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 SER 31 31 31 SER SER A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 ASP 34 34 34 ASP ASP A . n A 1 35 PHE 35 35 35 PHE PHE A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 ASP 38 38 38 ASP ASP A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 GLU 41 41 41 GLU GLU A . n A 1 42 THR 42 42 42 THR THR A . n A 1 43 ASP 43 43 43 ASP ASP A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 SER 45 45 45 SER SER A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 PRO 54 54 54 PRO PRO A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 ASP 58 58 58 ASP ASP A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 PRO 60 60 60 PRO PRO A . n A 1 61 CYS 61 61 61 CYS CYS A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 ARG 65 65 65 ARG ARG A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 PRO 67 67 67 PRO PRO A . n A 1 68 ASN 68 68 68 ASN ASN A . n A 1 69 ASN 69 69 69 ASN ASN A . n A 1 70 HIS 70 70 70 HIS HIS A . n A 1 71 ILE 71 71 71 ILE ILE A . n A 1 72 GLY 72 72 72 GLY GLY A . n A 1 73 ILE 73 73 73 ILE ILE A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 PHE 75 75 75 PHE PHE A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 PRO 77 77 77 PRO PRO A . n A 1 78 ARG 78 78 78 ARG ARG A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 HIS 83 83 83 HIS HIS A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 SER 86 86 86 SER SER A . n A 1 87 ILE 87 87 87 ILE ILE A . n A 1 88 LYS 88 88 88 LYS LYS A . n A 1 89 LYS 89 89 89 LYS LYS A . n A 1 90 ASN 90 90 90 ASN ASN A . n A 1 91 GLY 91 91 91 GLY GLY A . n A 1 92 ASN 92 92 92 ASN ASN A . n A 1 93 HIS 93 93 93 HIS HIS A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 ASN 96 96 96 ASN ASN A . n A 1 97 SER 97 97 97 SER SER A . n A 1 98 PRO 98 98 98 PRO PRO A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 ILE 101 101 101 ILE ILE A . n A 1 102 MET 102 102 102 MET MET A . n A 1 103 VAL 103 103 103 VAL VAL A . n A 1 104 VAL 104 104 104 VAL VAL A . n A 1 105 GLN 105 105 105 GLN GLN A . n A 1 106 SER 106 106 106 SER SER A . n A 1 107 GLU 107 107 107 GLU GLU A . n A 1 108 ILE 108 108 108 ILE ILE A . n A 1 109 GLY 109 109 109 GLY GLY A . n A 1 110 ASP 110 110 110 ASP ASP A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 GLY 112 112 112 GLY GLY A . n A 1 113 PRO 113 113 113 PRO PRO A . n A 1 114 SER 114 114 114 SER SER A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 GLY 116 116 116 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-10-20 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 6 ? ? 37.99 53.41 2 1 SER A 11 ? ? -174.79 143.81 3 1 PRO A 12 ? ? -69.88 -173.29 4 1 ASP A 19 ? ? -168.13 115.18 5 1 SER A 21 ? ? -86.90 35.32 6 1 ARG A 22 ? ? -44.90 169.62 7 1 ARG A 23 ? ? -84.48 42.67 8 1 SER A 40 ? ? -83.53 37.74 9 1 ASP A 43 ? ? -38.49 122.58 10 1 ALA A 53 ? ? -43.64 169.00 11 1 PRO A 67 ? ? -69.80 -174.04 12 1 HIS A 93 ? ? -37.97 141.56 13 1 SER A 115 ? ? -50.02 174.91 14 2 PHE A 13 ? ? -57.19 85.81 15 2 ILE A 17 ? ? -48.53 170.50 16 2 ASP A 20 ? ? -60.35 87.27 17 2 SER A 21 ? ? -64.90 78.62 18 2 ALA A 53 ? ? -43.33 168.45 19 2 PRO A 60 ? ? -69.84 91.52 20 2 HIS A 93 ? ? -36.39 143.28 21 2 SER A 106 ? ? -39.54 120.60 22 2 ILE A 108 ? ? 34.05 45.44 23 2 SER A 111 ? ? -39.52 134.11 24 3 ASP A 43 ? ? -43.80 106.77 25 3 ALA A 53 ? ? -48.39 167.64 26 3 PRO A 60 ? ? -69.77 93.11 27 3 ASN A 69 ? ? 34.16 42.74 28 3 HIS A 93 ? ? -35.22 145.55 29 3 GLN A 105 ? ? -65.17 98.15 30 4 SER A 2 ? ? -171.31 127.50 31 4 LYS A 16 ? ? -40.22 109.24 32 4 SER A 40 ? ? -84.24 34.37 33 4 ALA A 53 ? ? -43.84 169.31 34 4 HIS A 93 ? ? -35.55 141.24 35 4 SER A 106 ? ? -56.68 100.32 36 4 SER A 114 ? ? -34.69 107.88 37 5 SER A 40 ? ? -81.71 44.28 38 5 THR A 42 ? ? -109.73 -69.57 39 5 ASP A 43 ? ? -35.37 123.93 40 5 ALA A 53 ? ? -44.45 169.37 41 5 PRO A 60 ? ? -69.73 90.34 42 5 HIS A 93 ? ? -35.64 147.06 43 6 PRO A 12 ? ? -69.70 -172.44 44 6 SER A 21 ? ? -98.25 41.53 45 6 ASP A 43 ? ? -34.89 109.94 46 6 ALA A 53 ? ? -43.76 169.60 47 6 PRO A 60 ? ? -69.77 87.69 48 6 HIS A 93 ? ? -34.47 141.12 49 7 SER A 40 ? ? -80.05 44.54 50 7 LEU A 44 ? ? -43.91 -74.96 51 7 ALA A 53 ? ? -45.44 168.65 52 7 PRO A 60 ? ? -69.84 98.83 53 7 HIS A 93 ? ? -39.70 144.99 54 7 SER A 114 ? ? -171.01 129.60 55 8 ILE A 8 ? ? -34.26 148.99 56 8 ALA A 53 ? ? -43.69 169.18 57 8 PRO A 60 ? ? -69.71 83.72 58 8 HIS A 93 ? ? -34.44 141.58 59 9 THR A 18 ? ? -171.89 141.04 60 9 ASP A 19 ? ? -174.99 133.44 61 9 SER A 21 ? ? -92.21 47.31 62 9 SER A 40 ? ? -82.39 43.20 63 9 ASP A 43 ? ? 70.45 49.41 64 9 PRO A 60 ? ? -69.78 96.30 65 9 HIS A 93 ? ? -36.41 151.24 66 9 ILE A 108 ? ? -101.81 -60.28 67 10 THR A 14 ? ? -38.27 -71.94 68 10 SER A 40 ? ? -84.84 34.75 69 10 ASP A 43 ? ? -38.60 98.05 70 10 ALA A 53 ? ? -43.61 169.10 71 10 PRO A 60 ? ? -69.77 85.76 72 10 HIS A 93 ? ? -34.65 145.37 73 11 ALA A 32 ? ? -56.60 107.27 74 11 SER A 40 ? ? -89.91 31.59 75 11 ALA A 53 ? ? -43.69 169.06 76 11 PRO A 60 ? ? -69.70 92.56 77 11 HIS A 93 ? ? -34.11 143.88 78 11 SER A 115 ? ? 35.51 47.53 79 12 PRO A 9 ? ? -69.74 85.28 80 12 ILE A 17 ? ? -86.11 42.80 81 12 SER A 21 ? ? -88.68 41.77 82 12 CYS A 24 ? ? -38.67 111.48 83 12 SER A 40 ? ? -80.01 47.13 84 12 ALA A 53 ? ? -47.80 168.32 85 12 PRO A 60 ? ? -69.75 99.44 86 12 HIS A 93 ? ? -38.62 143.95 87 12 GLN A 105 ? ? -67.08 87.58 88 12 SER A 115 ? ? -167.91 107.00 89 13 ASP A 20 ? ? -41.36 161.60 90 13 SER A 40 ? ? -84.22 37.79 91 13 THR A 42 ? ? -90.15 -64.90 92 13 ASP A 43 ? ? -35.41 125.93 93 13 ALA A 53 ? ? -44.48 169.47 94 13 PRO A 60 ? ? -69.88 93.43 95 13 PRO A 67 ? ? -69.68 -175.84 96 13 HIS A 93 ? ? -36.49 151.08 97 13 SER A 114 ? ? -172.38 107.64 98 14 PRO A 12 ? ? -69.79 -168.23 99 14 PHE A 13 ? ? -37.68 141.94 100 14 LYS A 16 ? ? -37.35 -38.98 101 14 ASP A 20 ? ? -35.58 95.78 102 14 ARG A 22 ? ? -60.72 -179.05 103 14 SER A 40 ? ? -84.42 44.01 104 14 THR A 42 ? ? -97.56 -65.20 105 14 ASP A 43 ? ? -34.57 114.32 106 14 ALA A 53 ? ? -43.82 169.29 107 14 PRO A 60 ? ? -69.80 88.71 108 14 PRO A 77 ? ? -69.75 96.45 109 14 HIS A 93 ? ? -37.44 146.67 110 14 SER A 106 ? ? -65.65 -70.24 111 14 SER A 111 ? ? -95.23 44.83 112 15 SER A 3 ? ? -37.94 154.83 113 15 ILE A 8 ? ? -40.51 150.75 114 15 PRO A 12 ? ? -69.74 93.86 115 15 ASP A 43 ? ? -49.01 170.80 116 15 LEU A 44 ? ? -134.70 -43.68 117 15 PRO A 60 ? ? -69.77 96.88 118 15 PRO A 67 ? ? -69.77 -171.01 119 15 HIS A 93 ? ? -39.34 144.25 120 15 SER A 106 ? ? -55.78 100.07 121 15 ILE A 108 ? ? -93.15 -62.27 122 15 ASP A 110 ? ? -163.42 118.81 123 16 ALA A 15 ? ? -48.58 173.14 124 16 ARG A 22 ? ? -40.62 157.27 125 16 SER A 40 ? ? -84.53 37.88 126 16 SER A 46 ? ? -48.01 -19.79 127 16 ALA A 53 ? ? -44.03 169.88 128 16 PRO A 60 ? ? -69.83 86.70 129 16 HIS A 93 ? ? -35.92 144.44 130 16 ASP A 110 ? ? -58.48 96.26 131 17 SER A 21 ? ? 70.70 32.67 132 17 ARG A 22 ? ? -33.88 149.98 133 17 ALA A 53 ? ? -43.73 169.33 134 17 PRO A 60 ? ? -69.83 92.72 135 17 HIS A 93 ? ? -34.50 137.62 136 18 PRO A 9 ? ? -69.83 -166.61 137 18 SER A 11 ? ? -35.27 141.44 138 18 SER A 21 ? ? -81.16 43.08 139 18 ARG A 22 ? ? -83.67 39.60 140 18 CYS A 24 ? ? -48.97 168.40 141 18 SER A 40 ? ? -92.70 34.96 142 18 ASP A 43 ? ? -39.84 153.17 143 18 HIS A 93 ? ? -38.85 146.07 144 18 GLU A 107 ? ? -98.66 30.91 145 19 PRO A 9 ? ? -69.77 90.80 146 19 THR A 18 ? ? -45.23 153.85 147 19 SER A 21 ? ? -92.59 42.48 148 19 SER A 40 ? ? -80.95 44.86 149 19 ASP A 43 ? ? -38.72 103.91 150 19 ASN A 69 ? ? 33.24 47.46 151 19 HIS A 93 ? ? -34.48 144.15 152 19 SER A 106 ? ? -39.02 147.98 153 19 GLU A 107 ? ? -90.73 41.35 154 20 SER A 40 ? ? -78.31 46.48 155 20 THR A 42 ? ? -99.44 -72.29 156 20 ASP A 43 ? ? -36.15 108.93 157 20 ASN A 68 ? ? 72.95 33.71 158 20 HIS A 93 ? ? -34.62 143.54 #