data_2DND # _entry.id 2DND # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DND pdb_00002dnd 10.2210/pdb2dnd/pdb RCSB GDL003 ? ? WWPDB D_1000178006 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1989-01-09 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DND _pdbx_database_status.recvd_initial_deposition_date 1988-08-29 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Coll, M.' 1 'Frederick, C.A.' 2 'Wang, A.H.-J.' 3 'Rich, A.' 4 # _citation.id primary _citation.title ;A bifurcated hydrogen-bonded conformation in the d(A.T) base pairs of the DNA dodecamer d(CGCAAATTTGCG) and its complex with distamycin. ; _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 84 _citation.page_first 8385 _citation.page_last 8389 _citation.year 1987 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 3479798 _citation.pdbx_database_id_DOI 10.1073/pnas.84.23.8385 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Coll, M.' 1 ? primary 'Frederick, C.A.' 2 ? primary 'Wang, A.H.' 3 ? primary 'Rich, A.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*G)-3') ; 3662.404 2 ? ? ? ? 2 non-polymer syn 'DISTAMYCIN A' 481.508 1 ? ? ? ? 3 water nat water 18.015 75 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DA)(DA)(DA)(DT)(DT)(DT)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCAAATTTGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'DISTAMYCIN A' DMY 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DA n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DT n 1 10 DG n 1 11 DC n 1 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DMY non-polymer . 'DISTAMYCIN A' 'DISTAMYCIN; STALLIMYCIN' 'C22 H27 N9 O4' 481.508 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DT 9 9 9 DT T A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DC 1 13 13 DC C B . n B 1 2 DG 2 14 14 DG G B . n B 1 3 DC 3 15 15 DC C B . n B 1 4 DA 4 16 16 DA A B . n B 1 5 DA 5 17 17 DA A B . n B 1 6 DA 6 18 18 DA A B . n B 1 7 DT 7 19 19 DT T B . n B 1 8 DT 8 20 20 DT T B . n B 1 9 DT 9 21 21 DT T B . n B 1 10 DG 10 22 22 DG G B . n B 1 11 DC 11 23 23 DC C B . n B 1 12 DG 12 24 24 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMY 1 25 25 DMY DMY A . D 3 HOH 1 30 30 HOH HOH A . D 3 HOH 2 31 31 HOH HOH A . D 3 HOH 3 33 33 HOH HOH A . D 3 HOH 4 34 34 HOH HOH A . D 3 HOH 5 38 38 HOH HOH A . D 3 HOH 6 39 39 HOH HOH A . D 3 HOH 7 42 42 HOH HOH A . D 3 HOH 8 43 43 HOH HOH A . D 3 HOH 9 44 44 HOH HOH A . D 3 HOH 10 45 45 HOH HOH A . D 3 HOH 11 46 46 HOH HOH A . D 3 HOH 12 48 48 HOH HOH A . D 3 HOH 13 49 49 HOH HOH A . D 3 HOH 14 50 50 HOH HOH A . D 3 HOH 15 51 51 HOH HOH A . D 3 HOH 16 60 60 HOH HOH A . D 3 HOH 17 65 65 HOH HOH A . D 3 HOH 18 66 66 HOH HOH A . D 3 HOH 19 72 72 HOH HOH A . D 3 HOH 20 73 73 HOH HOH A . D 3 HOH 21 74 74 HOH HOH A . D 3 HOH 22 75 75 HOH HOH A . D 3 HOH 23 77 77 HOH HOH A . D 3 HOH 24 82 82 HOH HOH A . D 3 HOH 25 83 83 HOH HOH A . D 3 HOH 26 84 84 HOH HOH A . D 3 HOH 27 86 86 HOH HOH A . D 3 HOH 28 88 88 HOH HOH A . D 3 HOH 29 89 89 HOH HOH A . D 3 HOH 30 90 90 HOH HOH A . D 3 HOH 31 91 91 HOH HOH A . D 3 HOH 32 92 92 HOH HOH A . D 3 HOH 33 93 93 HOH HOH A . D 3 HOH 34 94 94 HOH HOH A . D 3 HOH 35 95 95 HOH HOH A . D 3 HOH 36 96 96 HOH HOH A . D 3 HOH 37 97 97 HOH HOH A . D 3 HOH 38 98 98 HOH HOH A . D 3 HOH 39 99 99 HOH HOH A . D 3 HOH 40 100 100 HOH HOH A . E 3 HOH 1 26 26 HOH HOH B . E 3 HOH 2 27 27 HOH HOH B . E 3 HOH 3 28 28 HOH HOH B . E 3 HOH 4 29 29 HOH HOH B . E 3 HOH 5 32 32 HOH HOH B . E 3 HOH 6 35 35 HOH HOH B . E 3 HOH 7 36 36 HOH HOH B . E 3 HOH 8 37 37 HOH HOH B . E 3 HOH 9 40 40 HOH HOH B . E 3 HOH 10 41 41 HOH HOH B . E 3 HOH 11 47 47 HOH HOH B . E 3 HOH 12 52 52 HOH HOH B . E 3 HOH 13 53 53 HOH HOH B . E 3 HOH 14 54 54 HOH HOH B . E 3 HOH 15 55 55 HOH HOH B . E 3 HOH 16 56 56 HOH HOH B . E 3 HOH 17 57 57 HOH HOH B . E 3 HOH 18 58 58 HOH HOH B . E 3 HOH 19 59 59 HOH HOH B . E 3 HOH 20 61 61 HOH HOH B . E 3 HOH 21 62 62 HOH HOH B . E 3 HOH 22 63 63 HOH HOH B . E 3 HOH 23 64 64 HOH HOH B . E 3 HOH 24 67 67 HOH HOH B . E 3 HOH 25 68 68 HOH HOH B . E 3 HOH 26 69 69 HOH HOH B . E 3 HOH 27 70 70 HOH HOH B . E 3 HOH 28 71 71 HOH HOH B . E 3 HOH 29 76 76 HOH HOH B . E 3 HOH 30 78 78 HOH HOH B . E 3 HOH 31 79 79 HOH HOH B . E 3 HOH 32 80 80 HOH HOH B . E 3 HOH 33 81 81 HOH HOH B . E 3 HOH 34 85 85 HOH HOH B . E 3 HOH 35 87 87 HOH HOH B . # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 2DND _cell.length_a 25.200 _cell.length_b 41.070 _cell.length_c 64.650 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DND _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 2DND _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.28 _exptl_crystal.density_percent_sol 46.14 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details 'ROOM TEMPERATURE' _exptl_crystal_grow.pH 6.50 _exptl_crystal_grow.pdbx_details 'pH 6.50, VAPOR DIFFUSION' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 'NA CACODYLATE' ? ? ? 1 4 1 SPERMINE ? ? ? 1 5 1 MGCL2 ? ? ? 1 6 2 WATER ? ? ? 1 7 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 288.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'NICOLET P3' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 2DND _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 2.000 _reflns.d_resolution_low ? _reflns.d_resolution_high 2.200 _reflns.number_obs 2369 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 2DND _refine.ls_number_reflns_obs 2369 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 2.200 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.2020000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.number_atoms_solvent 75 _refine_hist.number_atoms_total 596 _refine_hist.d_res_high 2.200 _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 2DND _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2DND _struct.title ;A BIFURCATED HYDROGEN-BONDED CONFORMATION IN THE D(A.T) BASE PAIRS OF THE DNA DODECAMER D(CGCAAATTTGCG) AND ITS COMPLEX WITH DISTAMYCIN ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DND _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2DND _struct_ref.pdbx_db_accession 2DND _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2DND A 1 ? 12 ? 2DND 1 ? 12 ? 1 12 2 1 2DND B 1 ? 12 ? 2DND 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 9 N3 ? ? A DA 4 B DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 9 O4 ? ? A DA 4 B DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 9 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 9 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DA 4 N1 ? ? A DG 10 B DA 16 1_555 ? ? ? ? ? ? 'DG-DA MISPAIR' ? ? ? hydrog26 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A DMY 25 ? 17 'BINDING SITE FOR RESIDUE DMY A 25' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 17 DA A 4 ? DA A 4 . ? 1_555 ? 2 AC1 17 DA A 5 ? DA A 5 . ? 1_555 ? 3 AC1 17 DA A 6 ? DA A 6 . ? 1_555 ? 4 AC1 17 DT A 7 ? DT A 7 . ? 1_555 ? 5 AC1 17 DT A 8 ? DT A 8 . ? 1_555 ? 6 AC1 17 DT A 9 ? DT A 9 . ? 1_555 ? 7 AC1 17 DG A 12 ? DG A 12 . ? 2_665 ? 8 AC1 17 HOH D . ? HOH A 83 . ? 1_555 ? 9 AC1 17 HOH D . ? HOH A 93 . ? 1_555 ? 10 AC1 17 HOH D . ? HOH A 95 . ? 1_555 ? 11 AC1 17 HOH D . ? HOH A 98 . ? 1_555 ? 12 AC1 17 DA B 6 ? DA B 18 . ? 1_555 ? 13 AC1 17 DT B 7 ? DT B 19 . ? 1_555 ? 14 AC1 17 DT B 8 ? DT B 20 . ? 1_555 ? 15 AC1 17 DT B 9 ? DT B 21 . ? 1_555 ? 16 AC1 17 DG B 10 ? DG B 22 . ? 1_555 ? 17 AC1 17 DC B 11 ? DC B 23 . ? 1_555 ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 "O3'" _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 DG _pdbx_validate_symm_contact.auth_seq_id_1 12 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 N9 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 DMY _pdbx_validate_symm_contact.auth_seq_id_2 25 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_664 _pdbx_validate_symm_contact.dist 1.87 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DC 1 ? ? "C3'" A DC 1 ? ? 1.355 1.419 -0.064 0.006 N 2 1 N1 A DC 1 ? ? C6 A DC 1 ? ? 1.324 1.367 -0.043 0.006 N 3 1 P A DG 2 ? ? OP1 A DG 2 ? ? 1.612 1.485 0.127 0.017 N 4 1 "C4'" A DG 2 ? ? "C3'" A DG 2 ? ? 1.461 1.521 -0.060 0.010 N 5 1 C2 A DG 2 ? ? N3 A DG 2 ? ? 1.383 1.323 0.060 0.008 N 6 1 C5 A DG 2 ? ? N7 A DG 2 ? ? 1.328 1.388 -0.060 0.006 N 7 1 N7 A DG 2 ? ? C8 A DG 2 ? ? 1.349 1.305 0.044 0.006 N 8 1 "C3'" A DC 3 ? ? "C2'" A DC 3 ? ? 1.466 1.516 -0.050 0.008 N 9 1 "O4'" A DC 3 ? ? "C4'" A DC 3 ? ? 1.369 1.446 -0.077 0.010 N 10 1 N3 A DC 3 ? ? C4 A DC 3 ? ? 1.398 1.335 0.063 0.007 N 11 1 "O3'" A DC 3 ? ? P A DA 4 ? ? 1.687 1.607 0.080 0.012 Y 12 1 "O5'" A DA 4 ? ? "C5'" A DA 4 ? ? 1.540 1.440 0.100 0.016 N 13 1 N1 A DA 4 ? ? C2 A DA 4 ? ? 1.422 1.339 0.083 0.009 N 14 1 N1 A DA 5 ? ? C2 A DA 5 ? ? 1.401 1.339 0.062 0.009 N 15 1 N3 A DA 6 ? ? C4 A DA 6 ? ? 1.393 1.344 0.049 0.006 N 16 1 C8 A DA 6 ? ? N9 A DA 6 ? ? 1.423 1.373 0.050 0.008 N 17 1 N9 A DA 6 ? ? C4 A DA 6 ? ? 1.320 1.374 -0.054 0.006 N 18 1 C6 A DA 6 ? ? N6 A DA 6 ? ? 1.385 1.335 0.050 0.008 N 19 1 P A DT 7 ? ? "O5'" A DT 7 ? ? 1.526 1.593 -0.067 0.010 N 20 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? 1.531 1.420 0.111 0.011 N 21 1 C4 A DT 7 ? ? O4 A DT 7 ? ? 1.290 1.228 0.062 0.009 N 22 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? 1.502 1.420 0.082 0.011 N 23 1 "O4'" A DT 8 ? ? "C4'" A DT 8 ? ? 1.373 1.446 -0.073 0.010 N 24 1 C4 A DT 8 ? ? C5 A DT 8 ? ? 1.376 1.445 -0.069 0.009 N 25 1 C2 A DT 8 ? ? O2 A DT 8 ? ? 1.281 1.220 0.061 0.008 N 26 1 C4 A DT 8 ? ? O4 A DT 8 ? ? 1.296 1.228 0.068 0.009 N 27 1 "O3'" A DT 8 ? ? P A DT 9 ? ? 1.501 1.607 -0.106 0.012 Y 28 1 "O3'" A DT 9 ? ? "C3'" A DT 9 ? ? 1.380 1.419 -0.039 0.006 N 29 1 "O4'" A DG 10 ? ? "C4'" A DG 10 ? ? 1.376 1.446 -0.070 0.010 N 30 1 P A DC 11 ? ? "O5'" A DC 11 ? ? 1.702 1.593 0.109 0.010 N 31 1 N3 A DC 11 ? ? C4 A DC 11 ? ? 1.399 1.335 0.064 0.007 N 32 1 "O3'" A DC 11 ? ? P A DG 12 ? ? 1.708 1.607 0.101 0.012 Y 33 1 "O5'" B DC 13 ? ? "C5'" B DC 13 ? ? 1.566 1.440 0.126 0.016 N 34 1 "C2'" B DC 13 ? ? "C1'" B DC 13 ? ? 1.451 1.518 -0.067 0.010 N 35 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? 1.507 1.420 0.087 0.011 N 36 1 C8 B DG 14 ? ? N9 B DG 14 ? ? 1.323 1.374 -0.051 0.007 N 37 1 "O5'" B DC 15 ? ? "C5'" B DC 15 ? ? 1.569 1.440 0.129 0.016 N 38 1 "O3'" B DC 15 ? ? "C3'" B DC 15 ? ? 1.362 1.419 -0.057 0.006 N 39 1 N1 B DC 15 ? ? C6 B DC 15 ? ? 1.328 1.367 -0.039 0.006 N 40 1 "O3'" B DC 15 ? ? P B DA 16 ? ? 1.463 1.607 -0.144 0.012 Y 41 1 C2 B DA 16 ? ? N3 B DA 16 ? ? 1.271 1.331 -0.060 0.009 N 42 1 N9 B DA 16 ? ? C4 B DA 16 ? ? 1.332 1.374 -0.042 0.006 N 43 1 "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? 1.460 1.521 -0.061 0.010 N 44 1 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? 1.494 1.420 0.074 0.011 N 45 1 N1 B DA 17 ? ? C2 B DA 17 ? ? 1.438 1.339 0.099 0.009 N 46 1 "O3'" B DA 17 ? ? P B DA 18 ? ? 1.699 1.607 0.092 0.012 Y 47 1 P B DA 18 ? ? OP2 B DA 18 ? ? 1.363 1.485 -0.122 0.017 N 48 1 P B DA 18 ? ? "O5'" B DA 18 ? ? 1.689 1.593 0.096 0.010 N 49 1 "O5'" B DA 18 ? ? "C5'" B DA 18 ? ? 1.538 1.440 0.098 0.016 N 50 1 "O4'" B DA 18 ? ? "C4'" B DA 18 ? ? 1.356 1.446 -0.090 0.010 N 51 1 N3 B DA 18 ? ? C4 B DA 18 ? ? 1.387 1.344 0.043 0.006 N 52 1 "C2'" B DT 19 ? ? "C1'" B DT 19 ? ? 1.441 1.518 -0.077 0.010 N 53 1 N1 B DT 19 ? ? C2 B DT 19 ? ? 1.426 1.376 0.050 0.008 N 54 1 C2 B DT 19 ? ? N3 B DT 19 ? ? 1.315 1.373 -0.058 0.008 N 55 1 C2 B DT 19 ? ? O2 B DT 19 ? ? 1.296 1.220 0.076 0.008 N 56 1 "O3'" B DT 19 ? ? P B DT 20 ? ? 1.716 1.607 0.109 0.012 Y 57 1 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? 1.494 1.420 0.074 0.011 N 58 1 P B DT 21 ? ? "O5'" B DT 21 ? ? 1.702 1.593 0.109 0.010 N 59 1 P B DG 22 ? ? OP1 B DG 22 ? ? 1.608 1.485 0.123 0.017 N 60 1 C2 B DG 22 ? ? N3 B DG 22 ? ? 1.270 1.323 -0.053 0.008 N 61 1 C5 B DG 22 ? ? N7 B DG 22 ? ? 1.427 1.388 0.039 0.006 N 62 1 "O3'" B DG 22 ? ? P B DC 23 ? ? 1.711 1.607 0.104 0.012 Y 63 1 N1 B DC 23 ? ? C6 B DC 23 ? ? 1.326 1.367 -0.041 0.006 N 64 1 N1 B DG 24 ? ? C2 B DG 24 ? ? 1.316 1.373 -0.057 0.008 N 65 1 N7 B DG 24 ? ? C8 B DG 24 ? ? 1.380 1.305 0.075 0.006 N 66 1 C8 B DG 24 ? ? N9 B DG 24 ? ? 1.287 1.374 -0.087 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? 94.52 102.20 -7.68 0.70 N 2 1 N3 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 124.07 118.00 6.07 0.70 N 3 1 C5 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 115.87 120.20 -4.33 0.70 N 4 1 "C3'" A DC 1 ? ? "O3'" A DC 1 ? ? P A DG 2 ? ? 152.44 119.70 32.74 1.20 Y 5 1 OP1 A DG 2 ? ? P A DG 2 ? ? OP2 A DG 2 ? ? 106.53 119.60 -13.07 1.50 N 6 1 "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? "C3'" A DG 2 ? ? 101.96 104.50 -2.54 0.40 N 7 1 "C1'" A DG 2 ? ? "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? 117.13 110.30 6.83 0.70 N 8 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? "C2'" A DG 2 ? ? 97.16 105.90 -8.74 0.80 N 9 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 117.02 108.30 8.72 0.30 N 10 1 C6 A DG 2 ? ? N1 A DG 2 ? ? C2 A DG 2 ? ? 119.71 125.10 -5.39 0.60 N 11 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 116.31 111.50 4.81 0.50 N 12 1 C8 A DG 2 ? ? N9 A DG 2 ? ? C4 A DG 2 ? ? 103.71 106.40 -2.69 0.40 N 13 1 N9 A DG 2 ? ? C4 A DG 2 ? ? C5 A DG 2 ? ? 108.53 105.40 3.13 0.40 N 14 1 N3 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 113.57 119.90 -6.33 0.70 N 15 1 N1 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 116.26 119.90 -3.64 0.60 N 16 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DC 3 ? ? 111.09 119.70 -8.61 1.20 Y 17 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? "C2'" A DC 3 ? ? 101.02 105.90 -4.88 0.80 N 18 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 112.06 108.30 3.76 0.30 N 19 1 C5 A DC 3 ? ? C6 A DC 3 ? ? N1 A DC 3 ? ? 125.33 121.00 4.33 0.50 N 20 1 "O4'" A DA 4 ? ? "C4'" A DA 4 ? ? "C3'" A DA 4 ? ? 100.32 104.50 -4.18 0.40 N 21 1 "C4'" A DA 4 ? ? "C3'" A DA 4 ? ? "C2'" A DA 4 ? ? 93.02 102.20 -9.18 0.70 N 22 1 "C3'" A DA 4 ? ? "C2'" A DA 4 ? ? "C1'" A DA 4 ? ? 92.50 102.40 -9.90 0.80 N 23 1 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 118.90 108.30 10.60 0.30 N 24 1 N1 A DA 4 ? ? C2 A DA 4 ? ? N3 A DA 4 ? ? 123.94 129.30 -5.36 0.50 N 25 1 N1 A DA 4 ? ? C6 A DA 4 ? ? N6 A DA 4 ? ? 123.05 118.60 4.45 0.60 N 26 1 "C3'" A DA 4 ? ? "O3'" A DA 4 ? ? P A DA 5 ? ? 128.11 119.70 8.41 1.20 Y 27 1 OP1 A DA 5 ? ? P A DA 5 ? ? OP2 A DA 5 ? ? 106.03 119.60 -13.57 1.50 N 28 1 "O5'" A DA 5 ? ? P A DA 5 ? ? OP2 A DA 5 ? ? 127.10 110.70 16.40 1.20 N 29 1 P A DA 5 ? ? "O5'" A DA 5 ? ? "C5'" A DA 5 ? ? 111.14 120.90 -9.76 1.60 N 30 1 "C4'" A DA 5 ? ? "C3'" A DA 5 ? ? "C2'" A DA 5 ? ? 95.42 102.20 -6.78 0.70 N 31 1 "C3'" A DA 5 ? ? "C2'" A DA 5 ? ? "C1'" A DA 5 ? ? 94.86 102.40 -7.54 0.80 N 32 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 116.29 108.30 7.99 0.30 N 33 1 N1 A DA 5 ? ? C2 A DA 5 ? ? N3 A DA 5 ? ? 122.62 129.30 -6.68 0.50 N 34 1 C2 A DA 5 ? ? N3 A DA 5 ? ? C4 A DA 5 ? ? 115.12 110.60 4.52 0.50 N 35 1 "O3'" A DA 5 ? ? P A DA 6 ? ? OP1 A DA 6 ? ? 117.61 110.50 7.11 1.10 Y 36 1 OP1 A DA 6 ? ? P A DA 6 ? ? OP2 A DA 6 ? ? 109.82 119.60 -9.78 1.50 N 37 1 "O5'" A DA 6 ? ? "C5'" A DA 6 ? ? "C4'" A DA 6 ? ? 99.88 109.40 -9.52 0.80 N 38 1 P A DA 6 ? ? "O5'" A DA 6 ? ? "C5'" A DA 6 ? ? 109.88 120.90 -11.02 1.60 N 39 1 "O4'" A DA 6 ? ? "C4'" A DA 6 ? ? "C3'" A DA 6 ? ? 100.03 104.50 -4.47 0.40 N 40 1 "C5'" A DA 6 ? ? "C4'" A DA 6 ? ? "C3'" A DA 6 ? ? 123.35 115.70 7.65 1.20 N 41 1 "C3'" A DA 6 ? ? "C2'" A DA 6 ? ? "C1'" A DA 6 ? ? 96.70 102.40 -5.70 0.80 N 42 1 C6 A DA 6 ? ? N1 A DA 6 ? ? C2 A DA 6 ? ? 125.18 118.60 6.58 0.60 N 43 1 C2 A DA 6 ? ? N3 A DA 6 ? ? C4 A DA 6 ? ? 107.43 110.60 -3.17 0.50 N 44 1 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 113.62 117.70 -4.08 0.50 N 45 1 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 125.75 118.60 7.15 0.60 N 46 1 "C1'" A DT 7 ? ? "O4'" A DT 7 ? ? "C4'" A DT 7 ? ? 102.21 110.10 -7.89 1.00 N 47 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? "C2'" A DT 7 ? ? 98.31 105.90 -7.59 0.80 N 48 1 C6 A DT 7 ? ? N1 A DT 7 ? ? C2 A DT 7 ? ? 118.06 121.30 -3.24 0.50 N 49 1 N1 A DT 7 ? ? C2 A DT 7 ? ? N3 A DT 7 ? ? 119.69 114.60 5.09 0.60 N 50 1 C2 A DT 7 ? ? N3 A DT 7 ? ? C4 A DT 7 ? ? 121.53 127.20 -5.67 0.60 N 51 1 N1 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 115.38 123.10 -7.72 0.80 N 52 1 C4 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 124.25 119.00 5.25 0.60 N 53 1 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 117.76 122.90 -5.14 0.60 N 54 1 "C3'" A DT 7 ? ? "O3'" A DT 7 ? ? P A DT 8 ? ? 111.48 119.70 -8.22 1.20 Y 55 1 OP1 A DT 8 ? ? P A DT 8 ? ? OP2 A DT 8 ? ? 109.45 119.60 -10.15 1.50 N 56 1 N1 A DT 8 ? ? C2 A DT 8 ? ? N3 A DT 8 ? ? 119.32 114.60 4.72 0.60 N 57 1 C2 A DT 8 ? ? N3 A DT 8 ? ? C4 A DT 8 ? ? 119.10 127.20 -8.10 0.60 N 58 1 N3 A DT 8 ? ? C4 A DT 8 ? ? C5 A DT 8 ? ? 121.21 115.20 6.01 0.60 N 59 1 N3 A DT 8 ? ? C2 A DT 8 ? ? O2 A DT 8 ? ? 113.96 122.30 -8.34 0.60 N 60 1 N3 A DT 8 ? ? C4 A DT 8 ? ? O4 A DT 8 ? ? 112.61 119.90 -7.29 0.60 N 61 1 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.23 122.90 -3.67 0.60 N 62 1 "C3'" A DT 8 ? ? "O3'" A DT 8 ? ? P A DT 9 ? ? 131.59 119.70 11.89 1.20 Y 63 1 OP1 A DT 9 ? ? P A DT 9 ? ? OP2 A DT 9 ? ? 106.79 119.60 -12.81 1.50 N 64 1 "C5'" A DT 9 ? ? "C4'" A DT 9 ? ? "O4'" A DT 9 ? ? 116.92 109.80 7.12 1.10 N 65 1 C2 A DT 9 ? ? N3 A DT 9 ? ? C4 A DT 9 ? ? 122.20 127.20 -5.00 0.60 N 66 1 N3 A DT 9 ? ? C4 A DT 9 ? ? C5 A DT 9 ? ? 119.62 115.20 4.42 0.60 N 67 1 "C3'" A DT 9 ? ? "O3'" A DT 9 ? ? P A DG 10 ? ? 141.14 119.70 21.44 1.20 Y 68 1 OP1 A DG 10 ? ? P A DG 10 ? ? OP2 A DG 10 ? ? 105.85 119.60 -13.75 1.50 N 69 1 "O5'" A DG 10 ? ? P A DG 10 ? ? OP2 A DG 10 ? ? 120.26 110.70 9.56 1.20 N 70 1 "C5'" A DG 10 ? ? "C4'" A DG 10 ? ? "O4'" A DG 10 ? ? 116.42 109.80 6.62 1.10 N 71 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 112.44 108.30 4.14 0.30 N 72 1 C6 A DG 10 ? ? N1 A DG 10 ? ? C2 A DG 10 ? ? 121.24 125.10 -3.86 0.60 N 73 1 C5 A DG 10 ? ? C6 A DG 10 ? ? N1 A DG 10 ? ? 114.62 111.50 3.12 0.50 N 74 1 C8 A DG 10 ? ? N9 A DG 10 ? ? C4 A DG 10 ? ? 103.95 106.40 -2.45 0.40 N 75 1 "O5'" A DC 11 ? ? P A DC 11 ? ? OP1 A DC 11 ? ? 97.87 105.70 -7.83 0.90 N 76 1 "O5'" A DC 11 ? ? P A DC 11 ? ? OP2 A DC 11 ? ? 120.28 110.70 9.58 1.20 N 77 1 P A DC 11 ? ? "O5'" A DC 11 ? ? "C5'" A DC 11 ? ? 108.17 120.90 -12.73 1.60 N 78 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 113.62 108.30 5.32 0.30 N 79 1 "C3'" A DC 11 ? ? "O3'" A DC 11 ? ? P A DG 12 ? ? 105.54 119.70 -14.16 1.20 Y 80 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 116.10 108.30 7.80 0.30 N 81 1 C5 A DG 12 ? ? C6 A DG 12 ? ? N1 A DG 12 ? ? 115.00 111.50 3.50 0.50 N 82 1 "O5'" B DC 13 ? ? "C5'" B DC 13 ? ? "C4'" B DC 13 ? ? 98.00 109.40 -11.40 0.80 N 83 1 N3 B DC 13 ? ? C4 B DC 13 ? ? C5 B DC 13 ? ? 119.44 121.90 -2.46 0.40 N 84 1 N3 B DC 13 ? ? C4 B DC 13 ? ? N4 B DC 13 ? ? 122.76 118.00 4.76 0.70 N 85 1 OP1 B DG 14 ? ? P B DG 14 ? ? OP2 B DG 14 ? ? 107.99 119.60 -11.61 1.50 N 86 1 "O5'" B DG 14 ? ? P B DG 14 ? ? OP2 B DG 14 ? ? 118.28 110.70 7.58 1.20 N 87 1 "O4'" B DG 14 ? ? "C4'" B DG 14 ? ? "C3'" B DG 14 ? ? 101.77 104.50 -2.73 0.40 N 88 1 C5 B DG 14 ? ? C6 B DG 14 ? ? N1 B DG 14 ? ? 114.72 111.50 3.22 0.50 N 89 1 N1 B DG 14 ? ? C6 B DG 14 ? ? O6 B DG 14 ? ? 114.40 119.90 -5.50 0.60 N 90 1 "O5'" B DC 15 ? ? P B DC 15 ? ? OP2 B DC 15 ? ? 125.77 110.70 15.07 1.20 N 91 1 "O5'" B DC 15 ? ? "C5'" B DC 15 ? ? "C4'" B DC 15 ? ? 96.35 109.40 -13.05 0.80 N 92 1 P B DC 15 ? ? "O5'" B DC 15 ? ? "C5'" B DC 15 ? ? 108.87 120.90 -12.03 1.60 N 93 1 "O4'" B DC 15 ? ? "C4'" B DC 15 ? ? "C3'" B DC 15 ? ? 101.24 104.50 -3.26 0.40 N 94 1 "C3'" B DC 15 ? ? "O3'" B DC 15 ? ? P B DA 16 ? ? 146.74 119.70 27.04 1.20 Y 95 1 OP1 B DA 16 ? ? P B DA 16 ? ? OP2 B DA 16 ? ? 105.85 119.60 -13.75 1.50 N 96 1 "O4'" B DA 16 ? ? "C1'" B DA 16 ? ? "C2'" B DA 16 ? ? 109.94 106.80 3.14 0.50 N 97 1 "O4'" B DA 16 ? ? "C1'" B DA 16 ? ? N9 B DA 16 ? ? 113.49 108.30 5.19 0.30 N 98 1 C6 B DA 16 ? ? N1 B DA 16 ? ? C2 B DA 16 ? ? 123.15 118.60 4.55 0.60 N 99 1 C5 B DA 16 ? ? C6 B DA 16 ? ? N1 B DA 16 ? ? 113.58 117.70 -4.12 0.50 N 100 1 N1 B DA 16 ? ? C6 B DA 16 ? ? N6 B DA 16 ? ? 124.24 118.60 5.64 0.60 N 101 1 "C3'" B DA 16 ? ? "O3'" B DA 16 ? ? P B DA 17 ? ? 128.18 119.70 8.48 1.20 Y 102 1 "O5'" B DA 17 ? ? P B DA 17 ? ? OP2 B DA 17 ? ? 124.16 110.70 13.46 1.20 N 103 1 "O4'" B DA 17 ? ? "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? 98.72 104.50 -5.78 0.40 N 104 1 "C1'" B DA 17 ? ? "O4'" B DA 17 ? ? "C4'" B DA 17 ? ? 103.97 110.10 -6.13 1.00 N 105 1 "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? 96.51 102.20 -5.69 0.70 N 106 1 "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? "C1'" B DA 17 ? ? 96.43 102.40 -5.97 0.80 N 107 1 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 115.78 108.30 7.48 0.30 N 108 1 N1 B DA 17 ? ? C2 B DA 17 ? ? N3 B DA 17 ? ? 124.49 129.30 -4.81 0.50 N 109 1 "C3'" B DA 17 ? ? "O3'" B DA 17 ? ? P B DA 18 ? ? 111.22 119.70 -8.48 1.20 Y 110 1 "O5'" B DA 18 ? ? P B DA 18 ? ? OP2 B DA 18 ? ? 128.92 110.70 18.22 1.20 N 111 1 P B DA 18 ? ? "O5'" B DA 18 ? ? "C5'" B DA 18 ? ? 100.18 120.90 -20.72 1.60 N 112 1 "C1'" B DA 18 ? ? "O4'" B DA 18 ? ? "C4'" B DA 18 ? ? 116.35 110.30 6.05 0.70 N 113 1 "C4'" B DA 18 ? ? "C3'" B DA 18 ? ? "C2'" B DA 18 ? ? 96.68 102.20 -5.52 0.70 N 114 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? "C2'" B DA 18 ? ? 98.04 105.90 -7.86 0.80 N 115 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? N9 B DA 18 ? ? 111.47 108.30 3.17 0.30 N 116 1 "O5'" B DT 19 ? ? P B DT 19 ? ? OP2 B DT 19 ? ? 119.42 110.70 8.72 1.20 N 117 1 "O4'" B DT 19 ? ? "C4'" B DT 19 ? ? "C3'" B DT 19 ? ? 96.66 104.50 -7.84 0.40 N 118 1 "C1'" B DT 19 ? ? "O4'" B DT 19 ? ? "C4'" B DT 19 ? ? 100.83 110.10 -9.27 1.00 N 119 1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 110.90 108.30 2.60 0.30 N 120 1 N3 B DT 19 ? ? C4 B DT 19 ? ? C5 B DT 19 ? ? 120.71 115.20 5.51 0.60 N 121 1 "C3'" B DT 19 ? ? "O3'" B DT 19 ? ? P B DT 20 ? ? 108.00 119.70 -11.70 1.20 Y 122 1 "O5'" B DT 20 ? ? P B DT 20 ? ? OP2 B DT 20 ? ? 122.97 110.70 12.27 1.20 N 123 1 C2 B DT 20 ? ? N3 B DT 20 ? ? C4 B DT 20 ? ? 122.34 127.20 -4.86 0.60 N 124 1 N3 B DT 20 ? ? C4 B DT 20 ? ? C5 B DT 20 ? ? 119.41 115.20 4.21 0.60 N 125 1 N1 B DT 20 ? ? C2 B DT 20 ? ? O2 B DT 20 ? ? 117.44 123.10 -5.66 0.80 N 126 1 C5 B DT 20 ? ? C4 B DT 20 ? ? O4 B DT 20 ? ? 119.23 124.90 -5.67 0.70 N 127 1 "C3'" B DT 20 ? ? "O3'" B DT 20 ? ? P B DT 21 ? ? 131.61 119.70 11.91 1.20 Y 128 1 "O3'" B DT 20 ? ? P B DT 21 ? ? OP1 B DT 21 ? ? 121.62 110.50 11.12 1.10 Y 129 1 P B DT 21 ? ? "O5'" B DT 21 ? ? "C5'" B DT 21 ? ? 110.43 120.90 -10.47 1.60 N 130 1 "O4'" B DT 21 ? ? "C1'" B DT 21 ? ? N1 B DT 21 ? ? 110.54 108.30 2.24 0.30 N 131 1 N1 B DT 21 ? ? C2 B DT 21 ? ? N3 B DT 21 ? ? 118.38 114.60 3.78 0.60 N 132 1 C2 B DT 21 ? ? N3 B DT 21 ? ? C4 B DT 21 ? ? 120.76 127.20 -6.44 0.60 N 133 1 N3 B DT 21 ? ? C4 B DT 21 ? ? C5 B DT 21 ? ? 119.91 115.20 4.71 0.60 N 134 1 C4 B DT 21 ? ? C5 B DT 21 ? ? C7 B DT 21 ? ? 123.50 119.00 4.50 0.60 N 135 1 C6 B DT 21 ? ? C5 B DT 21 ? ? C7 B DT 21 ? ? 118.44 122.90 -4.46 0.60 N 136 1 "C3'" B DT 21 ? ? "O3'" B DT 21 ? ? P B DG 22 ? ? 130.60 119.70 10.90 1.20 Y 137 1 "O5'" B DG 22 ? ? P B DG 22 ? ? OP2 B DG 22 ? ? 122.53 110.70 11.83 1.20 N 138 1 "O4'" B DG 22 ? ? "C4'" B DG 22 ? ? "C3'" B DG 22 ? ? 101.87 104.50 -2.63 0.40 N 139 1 "C4'" B DG 22 ? ? "C3'" B DG 22 ? ? "C2'" B DG 22 ? ? 96.40 102.20 -5.80 0.70 N 140 1 "C3'" B DG 22 ? ? "C2'" B DG 22 ? ? "C1'" B DG 22 ? ? 92.35 102.40 -10.05 0.80 N 141 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 120.93 108.30 12.63 0.30 N 142 1 C6 B DG 22 ? ? N1 B DG 22 ? ? C2 B DG 22 ? ? 120.92 125.10 -4.18 0.60 N 143 1 N1 B DG 22 ? ? C2 B DG 22 ? ? N2 B DG 22 ? ? 103.59 116.20 -12.61 0.90 N 144 1 N3 B DG 22 ? ? C2 B DG 22 ? ? N2 B DG 22 ? ? 129.90 119.90 10.00 0.70 N 145 1 N1 B DG 22 ? ? C6 B DG 22 ? ? O6 B DG 22 ? ? 109.71 119.90 -10.19 0.60 N 146 1 C5 B DG 22 ? ? C6 B DG 22 ? ? O6 B DG 22 ? ? 137.00 128.60 8.40 0.60 N 147 1 "O5'" B DC 23 ? ? P B DC 23 ? ? OP2 B DC 23 ? ? 120.37 110.70 9.67 1.20 N 148 1 "C4'" B DC 23 ? ? "C3'" B DC 23 ? ? "C2'" B DC 23 ? ? 95.45 102.20 -6.75 0.70 N 149 1 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 120.74 108.30 12.44 0.30 N 150 1 C6 B DC 23 ? ? N1 B DC 23 ? ? C2 B DC 23 ? ? 117.67 120.30 -2.63 0.40 N 151 1 C5 B DC 23 ? ? C6 B DC 23 ? ? N1 B DC 23 ? ? 125.10 121.00 4.10 0.50 N 152 1 N3 B DC 23 ? ? C4 B DC 23 ? ? N4 B DC 23 ? ? 122.21 118.00 4.21 0.70 N 153 1 "O3'" B DC 23 ? ? P B DG 24 ? ? OP1 B DG 24 ? ? 119.58 110.50 9.08 1.10 Y 154 1 OP1 B DG 24 ? ? P B DG 24 ? ? OP2 B DG 24 ? ? 109.50 119.60 -10.10 1.50 N 155 1 "O5'" B DG 24 ? ? "C5'" B DG 24 ? ? "C4'" B DG 24 ? ? 100.60 109.40 -8.80 0.80 N 156 1 P B DG 24 ? ? "O5'" B DG 24 ? ? "C5'" B DG 24 ? ? 108.78 120.90 -12.12 1.60 N 157 1 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9 B DG 24 ? ? 115.23 108.30 6.93 0.30 N 158 1 C5 B DG 24 ? ? C6 B DG 24 ? ? N1 B DG 24 ? ? 114.96 111.50 3.46 0.50 N 159 1 N3 B DG 24 ? ? C2 B DG 24 ? ? N2 B DG 24 ? ? 114.15 119.90 -5.75 0.70 N 160 1 C5 B DG 24 ? ? C6 B DG 24 ? ? O6 B DG 24 ? ? 123.24 128.60 -5.36 0.60 N # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'MINOR GROOVE BINDER' # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DMY C1 C N N 108 DMY O1 O N N 109 DMY N1 N N N 110 DMY C2 C Y N 111 DMY C3 C Y N 112 DMY C4 C Y N 113 DMY N2 N Y N 114 DMY C5 C Y N 115 DMY C6 C N N 116 DMY C7 C N N 117 DMY O2 O N N 118 DMY N3 N N N 119 DMY C8 C Y N 120 DMY C9 C Y N 121 DMY C10 C Y N 122 DMY N4 N Y N 123 DMY C11 C Y N 124 DMY C12 C N N 125 DMY C13 C N N 126 DMY O3 O N N 127 DMY N5 N N N 128 DMY C14 C Y N 129 DMY C15 C Y N 130 DMY C16 C Y N 131 DMY N6 N Y N 132 DMY C17 C Y N 133 DMY C18 C N N 134 DMY C19 C N N 135 DMY O4 O N N 136 DMY N7 N N N 137 DMY C20 C N N 138 DMY C21 C N N 139 DMY C22 C N N 140 DMY N8 N N N 141 DMY N9 N N N 142 DMY H1 H N N 143 DMY HN1 H N N 144 DMY H3 H N N 145 DMY H5 H N N 146 DMY H61 H N N 147 DMY H62 H N N 148 DMY H63 H N N 149 DMY HN3 H N N 150 DMY H9 H N N 151 DMY H11 H N N 152 DMY H121 H N N 153 DMY H122 H N N 154 DMY H123 H N N 155 DMY HN5 H N N 156 DMY H15 H N N 157 DMY H17 H N N 158 DMY H181 H N N 159 DMY H182 H N N 160 DMY H183 H N N 161 DMY HN7 H N N 162 DMY H201 H N N 163 DMY H202 H N N 164 DMY H211 H N N 165 DMY H212 H N N 166 DMY HN8 H N N 167 DMY HN91 H N N 168 DMY HN92 H N N 169 DT OP3 O N N 170 DT P P N N 171 DT OP1 O N N 172 DT OP2 O N N 173 DT "O5'" O N N 174 DT "C5'" C N N 175 DT "C4'" C N R 176 DT "O4'" O N N 177 DT "C3'" C N S 178 DT "O3'" O N N 179 DT "C2'" C N N 180 DT "C1'" C N R 181 DT N1 N N N 182 DT C2 C N N 183 DT O2 O N N 184 DT N3 N N N 185 DT C4 C N N 186 DT O4 O N N 187 DT C5 C N N 188 DT C7 C N N 189 DT C6 C N N 190 DT HOP3 H N N 191 DT HOP2 H N N 192 DT "H5'" H N N 193 DT "H5''" H N N 194 DT "H4'" H N N 195 DT "H3'" H N N 196 DT "HO3'" H N N 197 DT "H2'" H N N 198 DT "H2''" H N N 199 DT "H1'" H N N 200 DT H3 H N N 201 DT H71 H N N 202 DT H72 H N N 203 DT H73 H N N 204 DT H6 H N N 205 HOH O O N N 206 HOH H1 H N N 207 HOH H2 H N N 208 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DMY C1 O1 doub N N 113 DMY C1 N1 sing N N 114 DMY C1 H1 sing N N 115 DMY N1 C2 sing N N 116 DMY N1 HN1 sing N N 117 DMY C2 C3 sing Y N 118 DMY C2 C5 doub Y N 119 DMY C3 C4 doub Y N 120 DMY C3 H3 sing N N 121 DMY C4 N2 sing Y N 122 DMY C4 C7 sing N N 123 DMY N2 C5 sing Y N 124 DMY N2 C6 sing N N 125 DMY C5 H5 sing N N 126 DMY C6 H61 sing N N 127 DMY C6 H62 sing N N 128 DMY C6 H63 sing N N 129 DMY C7 O2 doub N N 130 DMY C7 N3 sing N N 131 DMY N3 C8 sing N N 132 DMY N3 HN3 sing N N 133 DMY C8 C9 sing Y N 134 DMY C8 C11 doub Y N 135 DMY C9 C10 doub Y N 136 DMY C9 H9 sing N N 137 DMY C10 N4 sing Y N 138 DMY C10 C13 sing N N 139 DMY N4 C11 sing Y N 140 DMY N4 C12 sing N N 141 DMY C11 H11 sing N N 142 DMY C12 H121 sing N N 143 DMY C12 H122 sing N N 144 DMY C12 H123 sing N N 145 DMY C13 O3 doub N N 146 DMY C13 N5 sing N N 147 DMY N5 C14 sing N N 148 DMY N5 HN5 sing N N 149 DMY C14 C15 sing Y N 150 DMY C14 C17 doub Y N 151 DMY C15 C16 doub Y N 152 DMY C15 H15 sing N N 153 DMY C16 N6 sing Y N 154 DMY C16 C19 sing N N 155 DMY N6 C17 sing Y N 156 DMY N6 C18 sing N N 157 DMY C17 H17 sing N N 158 DMY C18 H181 sing N N 159 DMY C18 H182 sing N N 160 DMY C18 H183 sing N N 161 DMY C19 O4 doub N N 162 DMY C19 N7 sing N N 163 DMY N7 C20 sing N N 164 DMY N7 HN7 sing N N 165 DMY C20 C21 sing N N 166 DMY C20 H201 sing N N 167 DMY C20 H202 sing N N 168 DMY C21 C22 sing N N 169 DMY C21 H211 sing N N 170 DMY C21 H212 sing N N 171 DMY C22 N8 doub N N 172 DMY C22 N9 sing N N 173 DMY N8 HN8 sing N N 174 DMY N9 HN91 sing N N 175 DMY N9 HN92 sing N N 176 DT OP3 P sing N N 177 DT OP3 HOP3 sing N N 178 DT P OP1 doub N N 179 DT P OP2 sing N N 180 DT P "O5'" sing N N 181 DT OP2 HOP2 sing N N 182 DT "O5'" "C5'" sing N N 183 DT "C5'" "C4'" sing N N 184 DT "C5'" "H5'" sing N N 185 DT "C5'" "H5''" sing N N 186 DT "C4'" "O4'" sing N N 187 DT "C4'" "C3'" sing N N 188 DT "C4'" "H4'" sing N N 189 DT "O4'" "C1'" sing N N 190 DT "C3'" "O3'" sing N N 191 DT "C3'" "C2'" sing N N 192 DT "C3'" "H3'" sing N N 193 DT "O3'" "HO3'" sing N N 194 DT "C2'" "C1'" sing N N 195 DT "C2'" "H2'" sing N N 196 DT "C2'" "H2''" sing N N 197 DT "C1'" N1 sing N N 198 DT "C1'" "H1'" sing N N 199 DT N1 C2 sing N N 200 DT N1 C6 sing N N 201 DT C2 O2 doub N N 202 DT C2 N3 sing N N 203 DT N3 C4 sing N N 204 DT N3 H3 sing N N 205 DT C4 O4 doub N N 206 DT C4 C5 sing N N 207 DT C5 C7 sing N N 208 DT C5 C6 doub N N 209 DT C7 H71 sing N N 210 DT C7 H72 sing N N 211 DT C7 H73 sing N N 212 DT C6 H6 sing N N 213 HOH O H1 sing N N 214 HOH O H2 sing N N 215 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2DND 'double helix' 2DND 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 -0.229 -0.167 0.015 10.227 -7.845 -3.545 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 0.061 -0.123 0.616 7.601 -14.501 0.964 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 -0.523 -0.055 -0.014 4.027 -17.931 -0.630 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DA 4 1_555 B DT 9 1_555 0.279 -0.148 0.246 12.897 -14.445 -12.269 4 A_DA4:DT21_B A 4 ? B 21 ? 20 1 1 A DA 5 1_555 B DT 8 1_555 0.437 -0.157 0.522 -0.139 -16.378 -7.574 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 -0.059 -0.233 -0.096 4.188 -20.847 -4.185 6 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 0.148 -0.020 -0.145 -9.297 -19.782 3.661 7 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 -0.427 0.024 -0.080 -9.719 -17.144 -4.374 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DT 9 1_555 B DA 4 1_555 -0.278 -0.218 -0.320 -12.603 -23.752 -1.204 9 A_DT9:DA16_B A 9 ? B 16 ? 20 1 1 A DG 10 1_555 B DC 3 1_555 0.034 -0.054 0.426 15.237 -4.584 0.055 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 -0.183 -0.033 0.773 -6.075 -10.095 -2.364 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.126 -0.166 -0.209 0.219 -14.315 -1.323 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 0.273 0.556 3.553 -1.587 0.467 45.011 0.680 -0.512 3.547 0.610 2.072 45.040 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.344 0.193 3.453 6.852 -5.106 34.812 1.094 0.488 3.397 -8.379 -11.244 35.814 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DA 4 1_555 B DT 9 1_555 -0.771 0.745 3.259 -2.164 8.580 29.913 -0.310 1.008 3.383 16.182 4.082 31.165 3 AA_DC3DA4:DT21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DA 4 1_555 B DT 9 1_555 A DA 5 1_555 B DT 8 1_555 0.036 -0.362 3.695 -0.715 1.375 38.122 -0.750 -0.157 3.679 2.104 1.095 38.153 4 AA_DA4DA5:DT20DT21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 -0.678 -0.748 2.785 -2.297 3.470 41.200 -1.373 0.751 2.748 4.915 3.255 41.400 5 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 0.414 -0.870 3.771 0.770 -0.780 31.435 -1.437 -0.596 3.799 -1.439 -1.420 31.453 6 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.362 -0.430 3.313 -0.798 -3.220 31.988 -0.189 0.508 3.347 -5.823 1.443 32.155 7 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DT 9 1_555 B DA 4 1_555 0.390 0.047 3.255 3.577 6.214 39.330 -0.647 -0.159 3.246 9.141 -5.261 39.953 8 AA_DT8DT9:DA16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DT 9 1_555 B DA 4 1_555 A DG 10 1_555 B DC 3 1_555 0.293 1.687 2.692 -9.242 -5.897 35.628 3.249 -1.409 2.251 -9.368 14.682 37.224 9 AA_DT9DG10:DC15DA16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -0.692 -0.279 3.919 -1.920 -11.782 34.220 1.577 0.784 3.836 -19.308 3.146 36.183 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 -0.083 0.954 3.382 8.421 4.136 39.998 0.889 1.078 3.375 5.948 -12.110 41.040 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _atom_sites.entry_id 2DND _atom_sites.fract_transf_matrix[1][1] 0.039683 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024349 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015468 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_