data_2DNH # _entry.id 2DNH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DNH pdb_00002dnh 10.2210/pdb2dnh/pdb RCSB RCSB025621 ? ? WWPDB D_1000025621 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk003000660.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DNH _pdbx_database_status.recvd_initial_deposition_date 2006-04-26 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tsuda, K.' 1 'Muto, Y.' 2 'Inoue, M.' 3 'Kigawa, T.' 4 'Terada, T.' 5 'Shirouzu, M.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution structure of RNA binding domain in Bruno-like 5 RNA binding protein' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tsuda, K.' 1 ? primary 'Muto, Y.' 2 ? primary 'Inoue, M.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Terada, T.' 5 ? primary 'Shirouzu, M.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Bruno-like 5, RNA binding protein' _entity.formula_weight 10934.057 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'RNA recognition motif' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQ TMPGASSSLVVKFADTDKESGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQ TMPGASSSLVVKFADTDKESGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk003000660.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 SER n 1 9 GLU n 1 10 SER n 1 11 ARG n 1 12 GLY n 1 13 GLY n 1 14 ARG n 1 15 ASP n 1 16 ARG n 1 17 LYS n 1 18 LEU n 1 19 PHE n 1 20 VAL n 1 21 GLY n 1 22 MET n 1 23 LEU n 1 24 ASN n 1 25 LYS n 1 26 GLN n 1 27 GLN n 1 28 SER n 1 29 GLU n 1 30 GLU n 1 31 ASP n 1 32 VAL n 1 33 LEU n 1 34 ARG n 1 35 LEU n 1 36 PHE n 1 37 GLN n 1 38 PRO n 1 39 PHE n 1 40 GLY n 1 41 VAL n 1 42 ILE n 1 43 ASP n 1 44 GLU n 1 45 CYS n 1 46 THR n 1 47 VAL n 1 48 LEU n 1 49 ARG n 1 50 GLY n 1 51 PRO n 1 52 ASP n 1 53 GLY n 1 54 SER n 1 55 SER n 1 56 LYS n 1 57 GLY n 1 58 CYS n 1 59 ALA n 1 60 PHE n 1 61 VAL n 1 62 LYS n 1 63 PHE n 1 64 SER n 1 65 SER n 1 66 HIS n 1 67 THR n 1 68 GLU n 1 69 ALA n 1 70 GLN n 1 71 ALA n 1 72 ALA n 1 73 ILE n 1 74 HIS n 1 75 ALA n 1 76 LEU n 1 77 HIS n 1 78 GLY n 1 79 SER n 1 80 GLN n 1 81 THR n 1 82 MET n 1 83 PRO n 1 84 GLY n 1 85 ALA n 1 86 SER n 1 87 SER n 1 88 SER n 1 89 LEU n 1 90 VAL n 1 91 VAL n 1 92 LYS n 1 93 PHE n 1 94 ALA n 1 95 ASP n 1 96 THR n 1 97 ASP n 1 98 LYS n 1 99 GLU n 1 100 SER n 1 101 GLY n 1 102 PRO n 1 103 SER n 1 104 SER n 1 105 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene Brunol5 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050725-22 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q86VW6_HUMAN _struct_ref.pdbx_db_accession Q86VW6 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 126 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DNH _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 99 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q86VW6 _struct_ref_seq.db_align_beg 126 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 217 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 126 _struct_ref_seq.pdbx_auth_seq_align_end 217 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DNH GLY A 1 ? UNP Q86VW6 ? ? 'cloning artifact' 119 1 1 2DNH SER A 2 ? UNP Q86VW6 ? ? 'cloning artifact' 120 2 1 2DNH SER A 3 ? UNP Q86VW6 ? ? 'cloning artifact' 121 3 1 2DNH GLY A 4 ? UNP Q86VW6 ? ? 'cloning artifact' 122 4 1 2DNH SER A 5 ? UNP Q86VW6 ? ? 'cloning artifact' 123 5 1 2DNH SER A 6 ? UNP Q86VW6 ? ? 'cloning artifact' 124 6 1 2DNH GLY A 7 ? UNP Q86VW6 ? ? 'cloning artifact' 125 7 1 2DNH SER A 100 ? UNP Q86VW6 ? ? 'cloning artifact' 218 8 1 2DNH GLY A 101 ? UNP Q86VW6 ? ? 'cloning artifact' 219 9 1 2DNH PRO A 102 ? UNP Q86VW6 ? ? 'cloning artifact' 220 10 1 2DNH SER A 103 ? UNP Q86VW6 ? ? 'cloning artifact' 221 11 1 2DNH SER A 104 ? UNP Q86VW6 ? ? 'cloning artifact' 222 12 1 2DNH GLY A 105 ? UNP Q86VW6 ? ? 'cloning artifact' 223 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.13mM 13C-15N PROTEIN, 20mM d-Tris-HCl(pH7.0), 100mM NaCl, 1mM d-DTT, 0.02% NaN3, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DNH _pdbx_nmr_refine.method 'torsion angle dynamics,restrainted molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DNH _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function,structures with the lowest energy,structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DNH _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 Delaglio,F 2 'data analysis' NMRView 5.0.4 Johnson,B.A 3 'data analysis' KUJIRA 0.9742 Kobayashi,N 4 'structure solution' CYANA 2.0.17 Guntert,P 5 refinement CYANA 2.0.17 Guntert,P 6 # _exptl.entry_id 2DNH _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DNH _struct.title 'Solution structure of RNA binding domain in Bruno-like 5 RNA binding protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DNH _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text ;RRM domain, RBD, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, RNA BINDING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 28 ? GLN A 37 ? SER A 146 GLN A 155 1 ? 10 HELX_P HELX_P2 2 SER A 65 ? HIS A 77 ? SER A 183 HIS A 195 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 42 ? ARG A 49 ? ILE A 160 ARG A 167 A 2 SER A 55 ? PHE A 63 ? SER A 173 PHE A 181 A 3 LYS A 17 ? GLY A 21 ? LYS A 135 GLY A 139 A 4 VAL A 90 ? PHE A 93 ? VAL A 208 PHE A 211 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 46 ? N THR A 164 O PHE A 60 ? O PHE A 178 A 2 3 O ALA A 59 ? O ALA A 177 N VAL A 20 ? N VAL A 138 A 3 4 N PHE A 19 ? N PHE A 137 O LYS A 92 ? O LYS A 210 # _database_PDB_matrix.entry_id 2DNH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DNH _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 119 119 GLY GLY A . n A 1 2 SER 2 120 120 SER SER A . n A 1 3 SER 3 121 121 SER SER A . n A 1 4 GLY 4 122 122 GLY GLY A . n A 1 5 SER 5 123 123 SER SER A . n A 1 6 SER 6 124 124 SER SER A . n A 1 7 GLY 7 125 125 GLY GLY A . n A 1 8 SER 8 126 126 SER SER A . n A 1 9 GLU 9 127 127 GLU GLU A . n A 1 10 SER 10 128 128 SER SER A . n A 1 11 ARG 11 129 129 ARG ARG A . n A 1 12 GLY 12 130 130 GLY GLY A . n A 1 13 GLY 13 131 131 GLY GLY A . n A 1 14 ARG 14 132 132 ARG ARG A . n A 1 15 ASP 15 133 133 ASP ASP A . n A 1 16 ARG 16 134 134 ARG ARG A . n A 1 17 LYS 17 135 135 LYS LYS A . n A 1 18 LEU 18 136 136 LEU LEU A . n A 1 19 PHE 19 137 137 PHE PHE A . n A 1 20 VAL 20 138 138 VAL VAL A . n A 1 21 GLY 21 139 139 GLY GLY A . n A 1 22 MET 22 140 140 MET MET A . n A 1 23 LEU 23 141 141 LEU LEU A . n A 1 24 ASN 24 142 142 ASN ASN A . n A 1 25 LYS 25 143 143 LYS LYS A . n A 1 26 GLN 26 144 144 GLN GLN A . n A 1 27 GLN 27 145 145 GLN GLN A . n A 1 28 SER 28 146 146 SER SER A . n A 1 29 GLU 29 147 147 GLU GLU A . n A 1 30 GLU 30 148 148 GLU GLU A . n A 1 31 ASP 31 149 149 ASP ASP A . n A 1 32 VAL 32 150 150 VAL VAL A . n A 1 33 LEU 33 151 151 LEU LEU A . n A 1 34 ARG 34 152 152 ARG ARG A . n A 1 35 LEU 35 153 153 LEU LEU A . n A 1 36 PHE 36 154 154 PHE PHE A . n A 1 37 GLN 37 155 155 GLN GLN A . n A 1 38 PRO 38 156 156 PRO PRO A . n A 1 39 PHE 39 157 157 PHE PHE A . n A 1 40 GLY 40 158 158 GLY GLY A . n A 1 41 VAL 41 159 159 VAL VAL A . n A 1 42 ILE 42 160 160 ILE ILE A . n A 1 43 ASP 43 161 161 ASP ASP A . n A 1 44 GLU 44 162 162 GLU GLU A . n A 1 45 CYS 45 163 163 CYS CYS A . n A 1 46 THR 46 164 164 THR THR A . n A 1 47 VAL 47 165 165 VAL VAL A . n A 1 48 LEU 48 166 166 LEU LEU A . n A 1 49 ARG 49 167 167 ARG ARG A . n A 1 50 GLY 50 168 168 GLY GLY A . n A 1 51 PRO 51 169 169 PRO PRO A . n A 1 52 ASP 52 170 170 ASP ASP A . n A 1 53 GLY 53 171 171 GLY GLY A . n A 1 54 SER 54 172 172 SER SER A . n A 1 55 SER 55 173 173 SER SER A . n A 1 56 LYS 56 174 174 LYS LYS A . n A 1 57 GLY 57 175 175 GLY GLY A . n A 1 58 CYS 58 176 176 CYS CYS A . n A 1 59 ALA 59 177 177 ALA ALA A . n A 1 60 PHE 60 178 178 PHE PHE A . n A 1 61 VAL 61 179 179 VAL VAL A . n A 1 62 LYS 62 180 180 LYS LYS A . n A 1 63 PHE 63 181 181 PHE PHE A . n A 1 64 SER 64 182 182 SER SER A . n A 1 65 SER 65 183 183 SER SER A . n A 1 66 HIS 66 184 184 HIS HIS A . n A 1 67 THR 67 185 185 THR THR A . n A 1 68 GLU 68 186 186 GLU GLU A . n A 1 69 ALA 69 187 187 ALA ALA A . n A 1 70 GLN 70 188 188 GLN GLN A . n A 1 71 ALA 71 189 189 ALA ALA A . n A 1 72 ALA 72 190 190 ALA ALA A . n A 1 73 ILE 73 191 191 ILE ILE A . n A 1 74 HIS 74 192 192 HIS HIS A . n A 1 75 ALA 75 193 193 ALA ALA A . n A 1 76 LEU 76 194 194 LEU LEU A . n A 1 77 HIS 77 195 195 HIS HIS A . n A 1 78 GLY 78 196 196 GLY GLY A . n A 1 79 SER 79 197 197 SER SER A . n A 1 80 GLN 80 198 198 GLN GLN A . n A 1 81 THR 81 199 199 THR THR A . n A 1 82 MET 82 200 200 MET MET A . n A 1 83 PRO 83 201 201 PRO PRO A . n A 1 84 GLY 84 202 202 GLY GLY A . n A 1 85 ALA 85 203 203 ALA ALA A . n A 1 86 SER 86 204 204 SER SER A . n A 1 87 SER 87 205 205 SER SER A . n A 1 88 SER 88 206 206 SER SER A . n A 1 89 LEU 89 207 207 LEU LEU A . n A 1 90 VAL 90 208 208 VAL VAL A . n A 1 91 VAL 91 209 209 VAL VAL A . n A 1 92 LYS 92 210 210 LYS LYS A . n A 1 93 PHE 93 211 211 PHE PHE A . n A 1 94 ALA 94 212 212 ALA ALA A . n A 1 95 ASP 95 213 213 ASP ASP A . n A 1 96 THR 96 214 214 THR THR A . n A 1 97 ASP 97 215 215 ASP ASP A . n A 1 98 LYS 98 216 216 LYS LYS A . n A 1 99 GLU 99 217 217 GLU GLU A . n A 1 100 SER 100 218 218 SER SER A . n A 1 101 GLY 101 219 219 GLY GLY A . n A 1 102 PRO 102 220 220 PRO PRO A . n A 1 103 SER 103 221 221 SER SER A . n A 1 104 SER 104 222 222 SER SER A . n A 1 105 GLY 105 223 223 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-10-26 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 120 ? ? -39.71 107.81 2 1 ARG A 134 ? ? -88.86 30.35 3 1 PRO A 156 ? ? -47.89 -17.18 4 1 ALA A 190 ? ? -39.73 -37.17 5 1 ILE A 191 ? ? -63.90 -72.91 6 1 MET A 200 ? ? -39.43 138.45 7 1 THR A 214 ? ? -59.04 -73.82 8 2 ARG A 132 ? ? -113.49 70.09 9 2 LYS A 143 ? ? -78.45 45.43 10 2 GLN A 144 ? ? -132.11 -34.01 11 2 PRO A 156 ? ? -47.95 -17.49 12 2 SER A 172 ? ? -35.66 102.70 13 2 ALA A 190 ? ? -38.65 -27.59 14 2 ILE A 191 ? ? -74.30 -71.07 15 2 ASP A 213 ? ? -39.28 141.48 16 2 ASP A 215 ? ? -168.39 119.72 17 2 SER A 218 ? ? -41.48 158.28 18 3 PRO A 156 ? ? -47.92 -16.77 19 3 LEU A 207 ? ? -40.04 151.57 20 4 PRO A 156 ? ? -47.97 -17.08 21 4 ALA A 190 ? ? -35.56 -38.77 22 4 ILE A 191 ? ? -62.74 -73.00 23 4 PRO A 201 ? ? -48.62 153.03 24 4 PHE A 211 ? ? -47.68 157.36 25 4 ASP A 213 ? ? -36.94 128.52 26 4 PRO A 220 ? ? -45.22 98.67 27 4 SER A 221 ? ? -174.40 126.22 28 5 SER A 124 ? ? -99.52 42.31 29 5 GLU A 127 ? ? -83.14 43.15 30 5 ASP A 133 ? ? -162.29 117.37 31 5 LYS A 143 ? ? -79.49 44.65 32 5 GLN A 144 ? ? -133.01 -40.75 33 5 SER A 173 ? ? -34.62 135.21 34 5 ALA A 190 ? ? -35.57 -33.58 35 5 ILE A 191 ? ? -66.62 -70.37 36 5 PRO A 201 ? ? -47.97 153.05 37 5 LEU A 207 ? ? -42.31 154.32 38 6 SER A 128 ? ? -62.59 97.89 39 6 ASP A 133 ? ? -48.83 159.51 40 6 PRO A 156 ? ? -47.98 -17.13 41 6 ASP A 170 ? ? -82.74 42.11 42 6 SER A 173 ? ? -35.28 117.35 43 6 ILE A 191 ? ? -65.89 -71.52 44 6 MET A 200 ? ? -39.92 139.13 45 6 PRO A 201 ? ? -48.21 150.49 46 6 PHE A 211 ? ? -47.39 153.28 47 6 PRO A 220 ? ? -45.61 169.38 48 7 SER A 120 ? ? -171.63 148.22 49 7 SER A 121 ? ? -162.16 118.99 50 7 GLU A 127 ? ? -65.66 82.10 51 7 LYS A 143 ? ? -81.95 42.67 52 7 GLN A 144 ? ? -133.22 -35.02 53 7 PRO A 156 ? ? -47.96 -17.02 54 7 ASP A 170 ? ? -88.58 40.35 55 7 SER A 173 ? ? -35.46 137.13 56 7 ILE A 191 ? ? -60.99 -72.21 57 7 ASP A 213 ? ? -172.95 146.35 58 8 PRO A 156 ? ? -47.99 -18.85 59 8 ASP A 161 ? ? -103.13 -61.62 60 8 ILE A 191 ? ? -69.44 -71.51 61 8 MET A 200 ? ? -39.19 139.20 62 8 PHE A 211 ? ? -45.87 154.54 63 9 GLU A 127 ? ? -45.21 166.21 64 9 LYS A 143 ? ? -90.38 42.24 65 9 GLN A 144 ? ? -134.40 -35.34 66 9 PRO A 156 ? ? -47.99 -17.18 67 9 ASP A 170 ? ? -92.69 41.12 68 9 SER A 173 ? ? -34.53 128.02 69 9 ILE A 191 ? ? -69.51 -71.67 70 9 MET A 200 ? ? -37.03 137.85 71 9 PRO A 201 ? ? -47.21 154.29 72 9 ASP A 213 ? ? -58.44 101.70 73 9 ASP A 215 ? ? -165.72 110.99 74 9 PRO A 220 ? ? -76.91 42.27 75 9 SER A 221 ? ? 37.17 40.44 76 10 ASP A 133 ? ? 39.23 39.34 77 10 ARG A 134 ? ? -79.50 45.96 78 10 LYS A 143 ? ? -77.61 47.60 79 10 GLN A 144 ? ? -133.77 -34.10 80 10 PRO A 156 ? ? -47.94 -18.38 81 10 ALA A 190 ? ? -39.52 -35.58 82 10 ILE A 191 ? ? -67.15 -70.30 83 10 PRO A 201 ? ? -48.67 151.14 84 10 ASP A 215 ? ? -107.76 -60.36 85 11 SER A 128 ? ? -69.15 92.96 86 11 ARG A 132 ? ? -112.75 79.37 87 11 LYS A 143 ? ? -83.73 41.91 88 11 PRO A 156 ? ? -48.02 -17.13 89 11 ASP A 170 ? ? -86.87 43.73 90 11 ILE A 191 ? ? -68.43 -72.58 91 11 ASP A 213 ? ? -61.31 86.54 92 11 THR A 214 ? ? -89.57 44.91 93 12 SER A 121 ? ? -93.00 -61.58 94 12 ARG A 132 ? ? -122.07 -53.35 95 12 ASP A 133 ? ? -34.69 110.77 96 12 ARG A 134 ? ? -84.33 32.67 97 12 PRO A 156 ? ? -47.94 -17.19 98 12 SER A 172 ? ? -124.57 -75.02 99 12 ILE A 191 ? ? -66.34 -71.06 100 12 PHE A 211 ? ? -41.69 155.93 101 12 ASP A 213 ? ? 70.50 53.99 102 13 SER A 124 ? ? -171.75 113.15 103 13 LYS A 143 ? ? -77.32 46.90 104 13 GLN A 144 ? ? -133.81 -34.55 105 13 PRO A 156 ? ? -48.00 -18.46 106 13 ASP A 170 ? ? -107.05 70.94 107 13 ILE A 191 ? ? -67.50 -71.31 108 13 MET A 200 ? ? -37.72 137.84 109 13 PRO A 201 ? ? -48.77 153.66 110 13 PHE A 211 ? ? -46.50 163.08 111 13 PRO A 220 ? ? -45.69 171.12 112 14 SER A 120 ? ? -44.09 150.92 113 14 SER A 123 ? ? -46.57 167.12 114 14 LYS A 143 ? ? -84.14 37.85 115 14 PRO A 156 ? ? -48.00 -16.95 116 14 MET A 200 ? ? -38.36 138.42 117 14 SER A 221 ? ? -69.00 84.04 118 15 ARG A 134 ? ? -84.12 44.34 119 15 PRO A 156 ? ? -47.97 -17.13 120 15 ASP A 170 ? ? -84.46 38.27 121 15 SER A 172 ? ? -120.51 -74.78 122 15 MET A 200 ? ? -39.93 137.92 123 15 ASP A 213 ? ? -95.02 43.77 124 15 THR A 214 ? ? -85.22 42.11 125 15 LYS A 216 ? ? -106.40 42.26 126 15 PRO A 220 ? ? -77.04 42.66 127 16 LYS A 143 ? ? -81.98 43.12 128 16 GLN A 144 ? ? -134.38 -37.84 129 16 PRO A 156 ? ? -47.92 -16.67 130 16 ASP A 170 ? ? -91.25 39.03 131 16 SER A 173 ? ? -35.03 133.09 132 16 ALA A 190 ? ? -39.40 -38.19 133 16 ILE A 191 ? ? -61.63 -71.22 134 16 MET A 200 ? ? -34.58 138.10 135 16 PRO A 201 ? ? -49.63 151.58 136 16 SER A 221 ? ? -48.30 102.64 137 17 PRO A 156 ? ? -48.01 -17.13 138 17 ASP A 161 ? ? -95.13 -62.30 139 17 ASP A 170 ? ? -101.10 63.37 140 17 ILE A 191 ? ? -57.36 -74.08 141 17 MET A 200 ? ? -39.62 154.86 142 17 ASP A 213 ? ? -38.02 154.54 143 17 SER A 221 ? ? -68.09 90.38 144 18 SER A 123 ? ? -85.02 41.36 145 18 SER A 126 ? ? -112.93 54.74 146 18 GLU A 127 ? ? -91.09 49.38 147 18 LYS A 143 ? ? -82.48 39.93 148 18 PRO A 156 ? ? -47.97 -17.28 149 18 ILE A 191 ? ? -60.04 -71.83 150 18 MET A 200 ? ? -37.11 155.25 151 18 SER A 221 ? ? -52.50 170.51 152 19 SER A 124 ? ? -39.84 152.44 153 19 ARG A 134 ? ? -95.16 32.71 154 19 LYS A 143 ? ? -82.37 40.69 155 19 PRO A 156 ? ? -47.99 -17.27 156 19 ASP A 170 ? ? -101.74 41.82 157 19 ILE A 191 ? ? -61.37 -73.50 158 19 MET A 200 ? ? -36.10 154.56 159 19 ASP A 213 ? ? -46.03 103.97 160 20 GLN A 144 ? ? -109.31 43.71 161 20 PRO A 156 ? ? -48.03 -16.75 162 20 SER A 173 ? ? -35.05 141.43 163 20 ILE A 191 ? ? -70.71 -72.41 164 20 MET A 200 ? ? -37.03 156.01 165 20 LEU A 207 ? ? -45.68 151.40 166 20 ASP A 213 ? ? -36.81 117.34 167 20 SER A 221 ? ? -39.95 121.89 #