HEADER RNA BINDING PROTEIN 26-APR-06 2DNN TITLE SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN RNA-BINDING PROTEIN 12 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-BINDING PROTEIN 12; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 SYNONYM: RNA-BINDING MOTIF PROTEIN 12, SH3/WW DOMAIN ANCHOR PROTEIN COMPND 6 IN THE NUCLEUS, SWAN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBM12; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050829-24; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS RRM DOMAIN, RBD, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DNN 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DNN 1 VERSN REVDAT 1 26-OCT-06 2DNN 0 JRNL AUTH K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN RNA-BINDING JRNL TITL 2 PROTEIN 12 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT,P (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DNN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000025625. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.29MM 13C-15N PROTEIN, 0MM D REMARK 210 -TRIS-HCL(PH7.0), 100MM NACL,1MM REMARK 210 D-DTT, 0.02% NAN3; 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9742, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 ESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, TRUCTURES WITH REMARK 210 THE LOWEST ENERGY, TRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 326 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 219 146.13 -170.45 REMARK 500 1 ILE A 229 126.44 -34.09 REMARK 500 1 PRO A 242 157.44 -45.27 REMARK 500 1 GLU A 247 -38.17 -36.34 REMARK 500 1 ASP A 252 -38.44 -34.93 REMARK 500 1 PHE A 254 41.81 -96.99 REMARK 500 1 ASN A 272 86.47 -68.83 REMARK 500 1 GLN A 284 -26.53 -38.80 REMARK 500 1 PHE A 287 -35.84 -38.00 REMARK 500 1 PRO A 306 153.20 -48.81 REMARK 500 1 PRO A 323 99.04 -45.74 REMARK 500 2 PRO A 226 92.91 -45.39 REMARK 500 2 PRO A 242 -177.56 -48.25 REMARK 500 2 ALA A 245 98.27 -43.52 REMARK 500 2 ASP A 252 -39.43 -37.32 REMARK 500 2 PHE A 254 43.60 -100.07 REMARK 500 2 ASP A 267 169.89 -49.75 REMARK 500 2 ASN A 272 89.44 -54.45 REMARK 500 2 PRO A 306 158.89 -49.17 REMARK 500 2 PRO A 323 154.85 -45.60 REMARK 500 3 SER A 219 -59.04 -131.23 REMARK 500 3 SER A 220 85.84 -61.44 REMARK 500 3 PHE A 254 37.11 -98.98 REMARK 500 3 ASP A 267 -176.80 -67.42 REMARK 500 3 ASN A 272 90.21 -63.87 REMARK 500 3 MET A 297 105.18 -161.29 REMARK 500 3 HIS A 318 106.16 -169.81 REMARK 500 4 PRO A 242 174.05 -47.16 REMARK 500 4 GLU A 247 -37.10 -36.50 REMARK 500 4 ASP A 252 -37.73 -38.60 REMARK 500 4 PHE A 254 43.46 -99.69 REMARK 500 4 ASP A 267 -75.05 -105.27 REMARK 500 4 HIS A 268 -56.97 -133.17 REMARK 500 4 MET A 297 105.43 -172.45 REMARK 500 4 PRO A 306 159.33 -48.30 REMARK 500 4 THR A 320 45.79 -99.52 REMARK 500 4 SER A 321 46.51 36.96 REMARK 500 5 SER A 219 132.28 -174.86 REMARK 500 5 PRO A 242 171.46 -47.38 REMARK 500 5 ALA A 245 129.66 -38.17 REMARK 500 5 PHE A 254 41.05 -96.02 REMARK 500 5 ASP A 267 -175.04 -64.81 REMARK 500 5 ASN A 272 81.85 -64.58 REMARK 500 5 MET A 297 105.71 -164.75 REMARK 500 6 PRO A 242 176.05 -47.52 REMARK 500 6 ASP A 252 -37.92 -38.41 REMARK 500 6 PHE A 254 45.87 -100.02 REMARK 500 6 MET A 297 105.67 -168.97 REMARK 500 6 PRO A 306 157.89 -48.95 REMARK 500 6 ILE A 319 -40.33 -133.52 REMARK 500 REMARK 500 THIS ENTRY HAS 154 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002100747.3 RELATED DB: TARGETDB DBREF 2DNN A 225 320 UNP Q9NTZ6 RBM12_HUMAN 290 390 SEQADV 2DNN GLY A 218 UNP Q9NTZ6 CLONING ARTIFACT SEQADV 2DNN SER A 219 UNP Q9NTZ6 CLONING ARTIFACT SEQADV 2DNN SER A 220 UNP Q9NTZ6 CLONING ARTIFACT SEQADV 2DNN GLY A 221 UNP Q9NTZ6 CLONING ARTIFACT SEQADV 2DNN SER A 222 UNP Q9NTZ6 CLONING ARTIFACT SEQADV 2DNN SER A 223 UNP Q9NTZ6 CLONING ARTIFACT SEQADV 2DNN GLY A 224 UNP Q9NTZ6 CLONING ARTIFACT SEQADV 2DNN SER A 321 UNP Q9NTZ6 CLONING ARTIFACT SEQADV 2DNN GLY A 322 UNP Q9NTZ6 CLONING ARTIFACT SEQADV 2DNN PRO A 323 UNP Q9NTZ6 CLONING ARTIFACT SEQADV 2DNN SER A 324 UNP Q9NTZ6 CLONING ARTIFACT SEQADV 2DNN SER A 325 UNP Q9NTZ6 CLONING ARTIFACT SEQADV 2DNN GLY A 326 UNP Q9NTZ6 CLONING ARTIFACT SEQRES 1 A 109 GLY SER SER GLY SER SER GLY LYS PRO LEU PRO ILE ASN SEQRES 2 A 109 PRO ASP ASP LEU TYR VAL SER VAL HIS GLY MET PRO PHE SEQRES 3 A 109 SER ALA MET GLU ASN ASP VAL ARG ASP PHE PHE HIS GLY SEQRES 4 A 109 LEU ARG VAL ASP ALA VAL HIS LEU LEU LYS ASP HIS VAL SEQRES 5 A 109 GLY ARG ASN ASN GLY ASN GLY LEU VAL LYS PHE LEU SER SEQRES 6 A 109 PRO GLN ASP THR PHE GLU ALA LEU LYS ARG ASN ARG MET SEQRES 7 A 109 LEU MET ILE GLN ARG TYR VAL GLU VAL SER PRO ALA THR SEQRES 8 A 109 GLU ARG GLN TRP VAL ALA ALA GLY GLY HIS ILE THR SER SEQRES 9 A 109 GLY PRO SER SER GLY HELIX 1 1 ASN A 230 LEU A 234 1 5 HELIX 2 2 MET A 246 PHE A 254 1 9 HELIX 3 3 SER A 282 ARG A 292 1 11 HELIX 4 4 THR A 308 GLY A 317 1 10 SHEET 1 A 4 ALA A 261 LEU A 264 0 SHEET 2 A 4 ASN A 275 LYS A 279 -1 O LEU A 277 N HIS A 263 SHEET 3 A 4 TYR A 235 HIS A 239 -1 N VAL A 238 O GLY A 276 SHEET 4 A 4 GLU A 303 PRO A 306 -1 O SER A 305 N SER A 237 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1