data_2DNO # _entry.id 2DNO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DNO pdb_00002dno 10.2210/pdb2dno/pdb RCSB RCSB025626 ? ? WWPDB D_1000025626 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk003001111.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DNO _pdbx_database_status.recvd_initial_deposition_date 2006-04-26 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tsuda, K.' 1 'Muto, Y.' 2 'Inoue, M.' 3 'Kigawa, T.' 4 'Terada, T.' 5 'Shirouzu, M.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution structure of RNA binding domain in Trinucleotide repeat containing 4 variant' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tsuda, K.' 1 ? primary 'Muto, Y.' 2 ? primary 'Inoue, M.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Terada, T.' 5 ? primary 'Shirouzu, M.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'trinucleotide repeat containing 4 variant' _entity.formula_weight 10712.840 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'RNA recognition motif' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGSRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLP GASSSLVVKFADTEKESGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGSRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLP GASSSLVVKFADTEKESGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk003001111.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 SER n 1 9 ARG n 1 10 GLY n 1 11 GLU n 1 12 ASP n 1 13 ARG n 1 14 LYS n 1 15 LEU n 1 16 PHE n 1 17 VAL n 1 18 GLY n 1 19 MET n 1 20 LEU n 1 21 GLY n 1 22 LYS n 1 23 GLN n 1 24 GLN n 1 25 THR n 1 26 ASP n 1 27 GLU n 1 28 ASP n 1 29 VAL n 1 30 ARG n 1 31 LYS n 1 32 MET n 1 33 PHE n 1 34 GLU n 1 35 PRO n 1 36 PHE n 1 37 GLY n 1 38 THR n 1 39 ILE n 1 40 ASP n 1 41 GLU n 1 42 CYS n 1 43 THR n 1 44 VAL n 1 45 LEU n 1 46 ARG n 1 47 GLY n 1 48 PRO n 1 49 ASP n 1 50 GLY n 1 51 THR n 1 52 SER n 1 53 LYS n 1 54 GLY n 1 55 CYS n 1 56 ALA n 1 57 PHE n 1 58 VAL n 1 59 LYS n 1 60 PHE n 1 61 GLN n 1 62 THR n 1 63 HIS n 1 64 ALA n 1 65 GLU n 1 66 ALA n 1 67 GLN n 1 68 ALA n 1 69 ALA n 1 70 ILE n 1 71 ASN n 1 72 THR n 1 73 LEU n 1 74 HIS n 1 75 SER n 1 76 SER n 1 77 ARG n 1 78 THR n 1 79 LEU n 1 80 PRO n 1 81 GLY n 1 82 ALA n 1 83 SER n 1 84 SER n 1 85 SER n 1 86 LEU n 1 87 VAL n 1 88 VAL n 1 89 LYS n 1 90 PHE n 1 91 ALA n 1 92 ASP n 1 93 THR n 1 94 GLU n 1 95 LYS n 1 96 GLU n 1 97 SER n 1 98 GLY n 1 99 PRO n 1 100 SER n 1 101 SER n 1 102 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P051017-05 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5SZQ7_HUMAN _struct_ref.pdbx_db_accession Q5SZQ7 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 88 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DNO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 96 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5SZQ7 _struct_ref_seq.db_align_beg 88 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 180 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 66 _struct_ref_seq.pdbx_auth_seq_align_end 154 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DNO GLY A 1 ? UNP Q5SZQ7 ? ? 'cloning artifact' 59 1 1 2DNO SER A 2 ? UNP Q5SZQ7 ? ? 'cloning artifact' 60 2 1 2DNO SER A 3 ? UNP Q5SZQ7 ? ? 'cloning artifact' 61 3 1 2DNO GLY A 4 ? UNP Q5SZQ7 ? ? 'cloning artifact' 62 4 1 2DNO SER A 5 ? UNP Q5SZQ7 ? ? 'cloning artifact' 63 5 1 2DNO SER A 6 ? UNP Q5SZQ7 ? ? 'cloning artifact' 64 6 1 2DNO GLY A 7 ? UNP Q5SZQ7 ? ? 'cloning artifact' 65 7 1 2DNO SER A 97 ? UNP Q5SZQ7 ? ? 'cloning artifact' 155 8 1 2DNO GLY A 98 ? UNP Q5SZQ7 ? ? 'cloning artifact' 156 9 1 2DNO PRO A 99 ? UNP Q5SZQ7 ? ? 'cloning artifact' 157 10 1 2DNO SER A 100 ? UNP Q5SZQ7 ? ? 'cloning artifact' 158 11 1 2DNO SER A 101 ? UNP Q5SZQ7 ? ? 'cloning artifact' 159 12 1 2DNO GLY A 102 ? UNP Q5SZQ7 ? ? 'cloning artifact' 160 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.14mM 13C-15N PROTEIN, 20mM d-Tris-HCl(pH7.0), 100mM NaCl, 1mM d-DTT,0.02% NaN3;90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DNO _pdbx_nmr_refine.method 'torsion angle dynamics, restrainted molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DNO _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DNO _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 Delaglio,F 2 'data analysis' NMRView 5.0.4 Johnson,B.A 3 'data analysis' KUJIRA 0.9742 Kobayashi,N 4 'structure solution' CYANA 2.0.17 Guntert,P 5 refinement CYANA 2.0.17 Guntert,P 6 # _exptl.entry_id 2DNO _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DNO _struct.title 'Solution structure of RNA binding domain in Trinucleotide repeat containing 4 variant' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DNO _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text ;RRM domain, RBD, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, RNA BINDING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 25 ? GLU A 34 ? THR A 83 GLU A 92 1 ? 10 HELX_P HELX_P2 2 PRO A 35 ? GLY A 37 ? PRO A 93 GLY A 95 5 ? 3 HELX_P HELX_P3 3 THR A 62 ? HIS A 74 ? THR A 120 HIS A 132 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 39 ? ARG A 46 ? ILE A 97 ARG A 104 A 2 SER A 52 ? PHE A 60 ? SER A 110 PHE A 118 A 3 LEU A 15 ? GLY A 18 ? LEU A 73 GLY A 76 A 4 VAL A 88 ? PHE A 90 ? VAL A 146 PHE A 148 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASP A 40 ? N ASP A 98 O LYS A 59 ? O LYS A 117 A 2 3 O ALA A 56 ? O ALA A 114 N VAL A 17 ? N VAL A 75 A 3 4 N PHE A 16 ? N PHE A 74 O LYS A 89 ? O LYS A 147 # _database_PDB_matrix.entry_id 2DNO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DNO _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 59 59 GLY GLY A . n A 1 2 SER 2 60 60 SER SER A . n A 1 3 SER 3 61 61 SER SER A . n A 1 4 GLY 4 62 62 GLY GLY A . n A 1 5 SER 5 63 63 SER SER A . n A 1 6 SER 6 64 64 SER SER A . n A 1 7 GLY 7 65 65 GLY GLY A . n A 1 8 SER 8 66 66 SER SER A . n A 1 9 ARG 9 67 67 ARG ARG A . n A 1 10 GLY 10 68 68 GLY GLY A . n A 1 11 GLU 11 69 69 GLU GLU A . n A 1 12 ASP 12 70 70 ASP ASP A . n A 1 13 ARG 13 71 71 ARG ARG A . n A 1 14 LYS 14 72 72 LYS LYS A . n A 1 15 LEU 15 73 73 LEU LEU A . n A 1 16 PHE 16 74 74 PHE PHE A . n A 1 17 VAL 17 75 75 VAL VAL A . n A 1 18 GLY 18 76 76 GLY GLY A . n A 1 19 MET 19 77 77 MET MET A . n A 1 20 LEU 20 78 78 LEU LEU A . n A 1 21 GLY 21 79 79 GLY GLY A . n A 1 22 LYS 22 80 80 LYS LYS A . n A 1 23 GLN 23 81 81 GLN GLN A . n A 1 24 GLN 24 82 82 GLN GLN A . n A 1 25 THR 25 83 83 THR THR A . n A 1 26 ASP 26 84 84 ASP ASP A . n A 1 27 GLU 27 85 85 GLU GLU A . n A 1 28 ASP 28 86 86 ASP ASP A . n A 1 29 VAL 29 87 87 VAL VAL A . n A 1 30 ARG 30 88 88 ARG ARG A . n A 1 31 LYS 31 89 89 LYS LYS A . n A 1 32 MET 32 90 90 MET MET A . n A 1 33 PHE 33 91 91 PHE PHE A . n A 1 34 GLU 34 92 92 GLU GLU A . n A 1 35 PRO 35 93 93 PRO PRO A . n A 1 36 PHE 36 94 94 PHE PHE A . n A 1 37 GLY 37 95 95 GLY GLY A . n A 1 38 THR 38 96 96 THR THR A . n A 1 39 ILE 39 97 97 ILE ILE A . n A 1 40 ASP 40 98 98 ASP ASP A . n A 1 41 GLU 41 99 99 GLU GLU A . n A 1 42 CYS 42 100 100 CYS CYS A . n A 1 43 THR 43 101 101 THR THR A . n A 1 44 VAL 44 102 102 VAL VAL A . n A 1 45 LEU 45 103 103 LEU LEU A . n A 1 46 ARG 46 104 104 ARG ARG A . n A 1 47 GLY 47 105 105 GLY GLY A . n A 1 48 PRO 48 106 106 PRO PRO A . n A 1 49 ASP 49 107 107 ASP ASP A . n A 1 50 GLY 50 108 108 GLY GLY A . n A 1 51 THR 51 109 109 THR THR A . n A 1 52 SER 52 110 110 SER SER A . n A 1 53 LYS 53 111 111 LYS LYS A . n A 1 54 GLY 54 112 112 GLY GLY A . n A 1 55 CYS 55 113 113 CYS CYS A . n A 1 56 ALA 56 114 114 ALA ALA A . n A 1 57 PHE 57 115 115 PHE PHE A . n A 1 58 VAL 58 116 116 VAL VAL A . n A 1 59 LYS 59 117 117 LYS LYS A . n A 1 60 PHE 60 118 118 PHE PHE A . n A 1 61 GLN 61 119 119 GLN GLN A . n A 1 62 THR 62 120 120 THR THR A . n A 1 63 HIS 63 121 121 HIS HIS A . n A 1 64 ALA 64 122 122 ALA ALA A . n A 1 65 GLU 65 123 123 GLU GLU A . n A 1 66 ALA 66 124 124 ALA ALA A . n A 1 67 GLN 67 125 125 GLN GLN A . n A 1 68 ALA 68 126 126 ALA ALA A . n A 1 69 ALA 69 127 127 ALA ALA A . n A 1 70 ILE 70 128 128 ILE ILE A . n A 1 71 ASN 71 129 129 ASN ASN A . n A 1 72 THR 72 130 130 THR THR A . n A 1 73 LEU 73 131 131 LEU LEU A . n A 1 74 HIS 74 132 132 HIS HIS A . n A 1 75 SER 75 133 133 SER SER A . n A 1 76 SER 76 134 134 SER SER A . n A 1 77 ARG 77 135 135 ARG ARG A . n A 1 78 THR 78 136 136 THR THR A . n A 1 79 LEU 79 137 137 LEU LEU A . n A 1 80 PRO 80 138 138 PRO PRO A . n A 1 81 GLY 81 139 139 GLY GLY A . n A 1 82 ALA 82 140 140 ALA ALA A . n A 1 83 SER 83 141 141 SER SER A . n A 1 84 SER 84 142 142 SER SER A . n A 1 85 SER 85 143 143 SER SER A . n A 1 86 LEU 86 144 144 LEU LEU A . n A 1 87 VAL 87 145 145 VAL VAL A . n A 1 88 VAL 88 146 146 VAL VAL A . n A 1 89 LYS 89 147 147 LYS LYS A . n A 1 90 PHE 90 148 148 PHE PHE A . n A 1 91 ALA 91 149 149 ALA ALA A . n A 1 92 ASP 92 150 150 ASP ASP A . n A 1 93 THR 93 151 151 THR THR A . n A 1 94 GLU 94 152 152 GLU GLU A . n A 1 95 LYS 95 153 153 LYS LYS A . n A 1 96 GLU 96 154 154 GLU GLU A . n A 1 97 SER 97 155 155 SER SER A . n A 1 98 GLY 98 156 156 GLY GLY A . n A 1 99 PRO 99 157 157 PRO PRO A . n A 1 100 SER 100 158 158 SER SER A . n A 1 101 SER 101 159 159 SER SER A . n A 1 102 GLY 102 160 160 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-10-26 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 61 ? ? -174.04 138.87 2 1 LYS A 72 ? ? -39.42 144.55 3 1 PRO A 93 ? ? -47.94 -15.27 4 1 ASP A 107 ? ? -83.53 39.90 5 1 SER A 110 ? ? -58.97 96.63 6 1 ASN A 129 ? ? -34.46 -39.80 7 1 THR A 130 ? ? -108.37 -71.88 8 1 LEU A 131 ? ? -34.35 -38.98 9 1 SER A 134 ? ? -91.71 -75.01 10 1 LEU A 137 ? ? -39.26 148.63 11 1 SER A 141 ? ? -32.01 -75.70 12 1 LEU A 144 ? ? -54.52 101.51 13 1 PHE A 148 ? ? -39.49 149.18 14 1 GLU A 152 ? ? -36.27 131.45 15 2 ASP A 70 ? ? -59.40 176.44 16 2 ARG A 71 ? ? -131.42 -48.65 17 2 ASP A 86 ? ? -52.89 -70.80 18 2 PRO A 93 ? ? -47.99 -15.13 19 2 SER A 110 ? ? -58.55 88.13 20 2 ASN A 129 ? ? -37.05 -38.72 21 2 THR A 130 ? ? -101.88 -71.42 22 2 HIS A 132 ? ? -34.64 122.10 23 2 SER A 133 ? ? 38.45 51.14 24 2 SER A 134 ? ? -95.38 -74.28 25 2 LEU A 137 ? ? -36.22 143.68 26 2 SER A 141 ? ? -32.38 -75.82 27 2 LYS A 153 ? ? -104.22 42.15 28 3 SER A 61 ? ? -134.73 -48.50 29 3 GLU A 69 ? ? -88.24 43.09 30 3 ASP A 86 ? ? -56.22 -72.57 31 3 PRO A 93 ? ? -47.97 -15.00 32 3 THR A 130 ? ? -102.73 -71.08 33 3 HIS A 132 ? ? -35.67 116.95 34 3 SER A 133 ? ? 39.33 52.89 35 3 SER A 134 ? ? -92.14 -74.09 36 3 LEU A 137 ? ? -37.63 143.13 37 3 SER A 141 ? ? -31.95 -75.68 38 3 LEU A 144 ? ? -66.67 97.83 39 4 PRO A 93 ? ? -48.01 -15.08 40 4 THR A 130 ? ? -101.67 -73.69 41 4 LEU A 131 ? ? -34.97 -37.26 42 4 SER A 134 ? ? -96.34 -70.77 43 4 LEU A 137 ? ? -37.96 141.99 44 4 SER A 141 ? ? -31.89 -75.31 45 4 LEU A 144 ? ? -35.22 115.06 46 4 SER A 155 ? ? -37.26 149.66 47 4 SER A 158 ? ? -63.56 83.83 48 5 SER A 61 ? ? -129.35 -58.14 49 5 PRO A 93 ? ? -48.00 -15.20 50 5 SER A 110 ? ? -67.98 92.94 51 5 ASN A 129 ? ? -36.39 -38.50 52 5 THR A 130 ? ? -105.70 -72.29 53 5 LEU A 131 ? ? -34.24 -35.60 54 5 SER A 134 ? ? -70.46 -74.23 55 5 LEU A 137 ? ? -36.30 143.93 56 5 SER A 141 ? ? -31.94 -75.56 57 5 LEU A 144 ? ? -61.82 89.13 58 5 PHE A 148 ? ? -40.02 158.06 59 6 SER A 66 ? ? -118.77 78.98 60 6 ASP A 84 ? ? -36.88 -29.57 61 6 PRO A 93 ? ? -48.01 -15.06 62 6 SER A 110 ? ? -59.06 93.19 63 6 LYS A 111 ? ? -38.87 -33.16 64 6 THR A 130 ? ? -100.51 -72.32 65 6 HIS A 132 ? ? -35.61 126.37 66 6 SER A 133 ? ? 34.59 53.18 67 6 SER A 134 ? ? -95.86 -74.68 68 6 LEU A 137 ? ? -39.38 142.26 69 6 SER A 141 ? ? -32.06 -75.31 70 6 LEU A 144 ? ? -39.55 122.05 71 6 SER A 159 ? ? -97.78 42.02 72 7 ARG A 67 ? ? -93.69 -61.29 73 7 ASP A 86 ? ? -52.85 -70.28 74 7 PRO A 93 ? ? -47.94 -15.16 75 7 ALA A 122 ? ? -47.16 -71.41 76 7 THR A 130 ? ? -96.52 -74.35 77 7 HIS A 132 ? ? -37.51 117.59 78 7 SER A 134 ? ? -95.94 -75.07 79 7 LEU A 137 ? ? -46.65 152.57 80 7 SER A 141 ? ? -32.39 -76.06 81 7 THR A 151 ? ? -132.84 -51.47 82 7 GLU A 152 ? ? -54.21 94.90 83 7 GLU A 154 ? ? -174.98 135.57 84 7 SER A 155 ? ? -41.51 154.17 85 8 PRO A 93 ? ? -47.96 -14.86 86 8 THR A 130 ? ? -109.63 -68.65 87 8 HIS A 132 ? ? -54.03 108.84 88 8 SER A 134 ? ? -99.87 -74.38 89 8 LEU A 137 ? ? -35.12 152.92 90 8 SER A 141 ? ? -32.39 -76.07 91 8 LEU A 144 ? ? -54.57 108.01 92 8 PHE A 148 ? ? -38.93 145.24 93 9 ASP A 84 ? ? -36.56 -37.72 94 9 PRO A 93 ? ? -47.94 -14.68 95 9 SER A 110 ? ? -65.31 97.28 96 9 ALA A 126 ? ? -40.25 -71.02 97 9 THR A 130 ? ? -108.28 -66.00 98 9 SER A 133 ? ? 36.87 53.60 99 9 SER A 134 ? ? -99.95 -69.70 100 9 SER A 141 ? ? -32.40 -75.83 101 10 GLU A 69 ? ? -96.37 -63.96 102 10 LYS A 72 ? ? -35.76 138.72 103 10 ASP A 84 ? ? -38.92 -28.65 104 10 PRO A 93 ? ? -47.96 -15.30 105 10 SER A 110 ? ? -54.80 98.77 106 10 THR A 130 ? ? -107.57 -69.99 107 10 SER A 134 ? ? -96.46 -75.05 108 10 LEU A 137 ? ? -44.60 152.27 109 10 SER A 141 ? ? -32.40 -76.00 110 10 ASP A 150 ? ? 35.45 51.86 111 11 ASP A 70 ? ? -34.51 135.86 112 11 PRO A 93 ? ? -48.02 -14.94 113 11 ASP A 107 ? ? -86.08 40.10 114 11 SER A 110 ? ? -69.02 96.18 115 11 ASN A 129 ? ? -35.24 -38.71 116 11 THR A 130 ? ? -107.20 -70.26 117 11 SER A 134 ? ? -99.86 -74.92 118 11 SER A 141 ? ? -31.42 -75.19 119 11 LEU A 144 ? ? -35.02 106.20 120 11 GLU A 152 ? ? 34.62 42.04 121 11 PRO A 157 ? ? -79.31 36.02 122 12 ASP A 70 ? ? -162.80 111.83 123 12 LYS A 72 ? ? -36.56 142.78 124 12 PRO A 93 ? ? -47.97 -14.84 125 12 CYS A 113 ? ? -170.93 146.22 126 12 ALA A 122 ? ? -43.71 -72.71 127 12 ASN A 129 ? ? -34.47 -39.25 128 12 THR A 130 ? ? -107.54 -72.96 129 12 LEU A 131 ? ? -34.38 -39.08 130 12 SER A 134 ? ? -99.96 -74.74 131 12 LEU A 137 ? ? -34.84 140.90 132 12 SER A 141 ? ? -32.17 -75.28 133 12 PHE A 148 ? ? -42.03 162.23 134 12 THR A 151 ? ? -35.42 148.48 135 13 GLN A 82 ? ? -45.83 154.03 136 13 PRO A 93 ? ? -47.95 -14.87 137 13 THR A 130 ? ? -100.15 -73.83 138 13 HIS A 132 ? ? -35.99 110.34 139 13 SER A 134 ? ? -98.93 -75.08 140 13 LEU A 137 ? ? -34.91 152.58 141 13 SER A 141 ? ? -31.34 -75.02 142 13 PHE A 148 ? ? -49.05 150.03 143 14 SER A 63 ? ? -47.39 172.72 144 14 ASP A 86 ? ? -62.27 -73.12 145 14 PRO A 93 ? ? -47.98 -14.87 146 14 THR A 130 ? ? -105.35 -71.25 147 14 SER A 134 ? ? -98.51 -75.03 148 14 SER A 141 ? ? -31.23 -74.84 149 14 PHE A 148 ? ? -37.34 152.69 150 14 ASP A 150 ? ? -162.63 115.78 151 15 ASP A 84 ? ? -36.77 -39.75 152 15 PRO A 93 ? ? -47.97 -14.50 153 15 CYS A 100 ? ? -170.62 115.45 154 15 PRO A 106 ? ? -45.11 155.76 155 15 ASN A 129 ? ? -34.47 -38.81 156 15 THR A 130 ? ? -102.49 -71.60 157 15 SER A 134 ? ? -96.65 -73.47 158 15 LEU A 137 ? ? -48.55 153.40 159 15 SER A 141 ? ? -32.72 -76.16 160 16 GLU A 69 ? ? -119.08 59.93 161 16 PRO A 93 ? ? -48.00 -14.71 162 16 SER A 110 ? ? -60.93 96.46 163 16 HIS A 132 ? ? -36.27 126.64 164 16 SER A 133 ? ? 33.53 40.76 165 16 SER A 134 ? ? -100.19 -72.87 166 16 SER A 141 ? ? -32.22 -75.44 167 16 ASP A 150 ? ? -88.24 38.92 168 17 ARG A 67 ? ? 70.57 42.96 169 17 GLU A 69 ? ? 38.82 45.68 170 17 LYS A 72 ? ? -36.73 152.21 171 17 PRO A 93 ? ? -47.97 -14.64 172 17 SER A 110 ? ? -60.38 96.27 173 17 ASN A 129 ? ? -39.80 -39.01 174 17 THR A 130 ? ? -101.81 -72.92 175 17 SER A 134 ? ? -99.10 -73.45 176 17 LEU A 137 ? ? -40.47 152.34 177 17 SER A 141 ? ? -32.44 -75.95 178 17 SER A 143 ? ? -62.29 -177.17 179 18 ASP A 70 ? ? -172.56 128.26 180 18 GLN A 82 ? ? -45.48 151.01 181 18 ASP A 86 ? ? -58.17 -74.69 182 18 PRO A 93 ? ? -47.91 -14.50 183 18 SER A 110 ? ? -60.10 93.97 184 18 THR A 130 ? ? -104.86 -71.87 185 18 HIS A 132 ? ? -35.18 107.40 186 18 SER A 134 ? ? -99.46 -74.98 187 18 LEU A 137 ? ? -36.92 141.85 188 18 SER A 141 ? ? -32.40 -75.65 189 18 LEU A 144 ? ? -59.83 108.24 190 18 GLU A 154 ? ? -40.62 101.26 191 19 PRO A 93 ? ? -47.96 -14.53 192 19 SER A 110 ? ? -63.87 93.02 193 19 THR A 130 ? ? -105.86 -67.77 194 19 SER A 134 ? ? -95.43 -74.77 195 19 LEU A 137 ? ? -36.33 142.71 196 19 SER A 141 ? ? -31.99 -75.53 197 19 SER A 143 ? ? -62.72 -179.81 198 19 LEU A 144 ? ? -65.65 97.51 199 19 ALA A 149 ? ? -49.13 163.42 200 19 ASP A 150 ? ? -107.61 -62.50 201 19 SER A 158 ? ? -124.71 -50.45 202 20 ARG A 71 ? ? -127.43 -53.04 203 20 LYS A 72 ? ? -34.90 137.51 204 20 PRO A 93 ? ? -47.94 -14.52 205 20 CYS A 100 ? ? -171.92 136.94 206 20 SER A 110 ? ? -67.32 99.77 207 20 ASN A 129 ? ? -38.87 -39.88 208 20 THR A 130 ? ? -108.13 -69.46 209 20 HIS A 132 ? ? -39.79 116.51 210 20 SER A 134 ? ? -99.58 -74.49 211 20 SER A 141 ? ? -32.11 -75.67 212 20 LEU A 144 ? ? -65.77 93.86 #