data_2DNT # _entry.id 2DNT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DNT pdb_00002dnt 10.2210/pdb2dnt/pdb RCSB RCSB025631 ? ? WWPDB D_1000025631 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hso002000011.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DNT _pdbx_database_status.recvd_initial_deposition_date 2006-04-26 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ruhul Momen, A.Z.M.' 1 'Hirota, H.' 2 'Izumi, K.' 3 'Yoshida, M.' 4 'Yokoyama, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title 'Solution Structure of RSGI RUH-064, a Chromo Domain from Human cDNA' _citation.journal_abbrev 'to be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ruhul Momen, A.Z.M.' 1 ? primary 'Hirota, H.' 2 ? primary 'Izumi, K.' 3 ? primary 'Yoshida, M.' 4 ? primary 'Yokoyama, S.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Chromodomain protein, Y chromosome-like, isoform b' _entity.formula_weight 9095.855 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'Methylated histone H3 tail binding domain' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSSGSSGMASEELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHTEKQKESGPSSG _entity_poly.pdbx_seq_one_letter_code_can GSSGSSGMASEELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHTEKQKESGPSSG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hso002000011.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 MET n 1 9 ALA n 1 10 SER n 1 11 GLU n 1 12 GLU n 1 13 LEU n 1 14 TYR n 1 15 GLU n 1 16 VAL n 1 17 GLU n 1 18 ARG n 1 19 ILE n 1 20 VAL n 1 21 ASP n 1 22 LYS n 1 23 ARG n 1 24 LYS n 1 25 ASN n 1 26 LYS n 1 27 LYS n 1 28 GLY n 1 29 LYS n 1 30 THR n 1 31 GLU n 1 32 TYR n 1 33 LEU n 1 34 VAL n 1 35 ARG n 1 36 TRP n 1 37 LYS n 1 38 GLY n 1 39 TYR n 1 40 ASP n 1 41 SER n 1 42 GLU n 1 43 ASP n 1 44 ASP n 1 45 THR n 1 46 TRP n 1 47 GLU n 1 48 PRO n 1 49 GLU n 1 50 GLN n 1 51 HIS n 1 52 LEU n 1 53 VAL n 1 54 ASN n 1 55 CYS n 1 56 GLU n 1 57 GLU n 1 58 TYR n 1 59 ILE n 1 60 HIS n 1 61 ASP n 1 62 PHE n 1 63 ASN n 1 64 ARG n 1 65 ARG n 1 66 HIS n 1 67 THR n 1 68 GLU n 1 69 LYS n 1 70 GLN n 1 71 LYS n 1 72 GLU n 1 73 SER n 1 74 GLY n 1 75 PRO n 1 76 SER n 1 77 SER n 1 78 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050829-10 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q32NC5_HUMAN _struct_ref.pdbx_db_accession Q32NC5 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DNT _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 72 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q32NC5 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 66 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 72 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DNT GLY A 1 ? UNP Q32NC5 ? ? 'cloning artifact' 1 1 1 2DNT SER A 2 ? UNP Q32NC5 ? ? 'cloning artifact' 2 2 1 2DNT SER A 3 ? UNP Q32NC5 ? ? 'cloning artifact' 3 3 1 2DNT GLY A 4 ? UNP Q32NC5 ? ? 'cloning artifact' 4 4 1 2DNT SER A 5 ? UNP Q32NC5 ? ? 'cloning artifact' 5 5 1 2DNT SER A 6 ? UNP Q32NC5 ? ? 'cloning artifact' 6 6 1 2DNT GLY A 7 ? UNP Q32NC5 ? ? 'cloning artifact' 7 7 1 2DNT SER A 73 ? UNP Q32NC5 ? ? 'cloning artifact' 73 8 1 2DNT GLY A 74 ? UNP Q32NC5 ? ? 'cloning artifact' 74 9 1 2DNT PRO A 75 ? UNP Q32NC5 ? ? 'cloning artifact' 75 10 1 2DNT SER A 76 ? UNP Q32NC5 ? ? 'cloning artifact' 76 11 1 2DNT SER A 77 ? UNP Q32NC5 ? ? 'cloning artifact' 77 12 1 2DNT GLY A 78 ? UNP Q32NC5 ? ? 'cloning artifact' 78 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_13C-separated_NOESY 1 2 1 3D_15N-separated_NOESY 2 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure Ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength '120mM NaCl' _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.09mM domain U-15N, 13C; 20mM d-Tris-HCl (pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90%H2O, 10%D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model ECA _pdbx_nmr_spectrometer.manufacturer JEOL _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DNT _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DNT _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DNT _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection 'Delta NMR' 4.3.2 JEOL 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMRView 5.04 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.955 'Kobayashi, N.' 4 'structure solution' CYANA 1.0.7 'Guntert, P.' 5 refinement CYANA 1.0.7 'Guntert, P.' 6 # _exptl.entry_id 2DNT _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DNT _struct.title 'Solution Structure of RSGI RUH-064, a Chromo Domain from Human cDNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DNT _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' _struct_keywords.text ;Chromo domain, Histone H3 tail, Choromatin organization modifier, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, STRUCTURAL PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 40 ? ASP A 44 ? ASP A 40 ASP A 44 5 ? 5 HELX_P HELX_P2 2 CYS A 55 ? THR A 67 ? CYS A 55 THR A 67 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 19 ? LYS A 24 ? ILE A 19 LYS A 24 A 2 THR A 30 ? VAL A 34 ? THR A 30 VAL A 34 A 3 THR A 45 ? PRO A 48 ? THR A 45 PRO A 48 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 23 ? N ARG A 23 O GLU A 31 ? O GLU A 31 A 2 3 N TYR A 32 ? N TYR A 32 O GLU A 47 ? O GLU A 47 # _database_PDB_matrix.entry_id 2DNT _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DNT _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 MET 8 8 8 MET MET A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 TYR 14 14 14 TYR TYR A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 ARG 23 23 23 ARG ARG A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 ASN 25 25 25 ASN ASN A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 TYR 32 32 32 TYR TYR A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 ARG 35 35 35 ARG ARG A . n A 1 36 TRP 36 36 36 TRP TRP A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 TYR 39 39 39 TYR TYR A . n A 1 40 ASP 40 40 40 ASP ASP A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 ASP 43 43 43 ASP ASP A . n A 1 44 ASP 44 44 44 ASP ASP A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 TRP 46 46 46 TRP TRP A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 PRO 48 48 48 PRO PRO A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 GLN 50 50 50 GLN GLN A . n A 1 51 HIS 51 51 51 HIS HIS A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 ASN 54 54 54 ASN ASN A . n A 1 55 CYS 55 55 55 CYS CYS A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 TYR 58 58 58 TYR TYR A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 HIS 60 60 60 HIS HIS A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 PHE 62 62 62 PHE PHE A . n A 1 63 ASN 63 63 63 ASN ASN A . n A 1 64 ARG 64 64 64 ARG ARG A . n A 1 65 ARG 65 65 65 ARG ARG A . n A 1 66 HIS 66 66 66 HIS HIS A . n A 1 67 THR 67 67 67 THR THR A . n A 1 68 GLU 68 68 68 GLU GLU A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 GLN 70 70 70 GLN GLN A . n A 1 71 LYS 71 71 71 LYS LYS A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 SER 73 73 73 SER SER A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 PRO 75 75 75 PRO PRO A . n A 1 76 SER 76 76 76 SER SER A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 GLY 78 78 78 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-10-26 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A ARG 23 ? ? H A GLU 31 ? ? 1.51 2 1 O A GLU 56 ? ? H A HIS 60 ? ? 1.52 3 1 O A ILE 59 ? ? H A ASN 63 ? ? 1.58 4 1 O A ASP 21 ? ? H A LEU 33 ? ? 1.58 5 2 O A GLU 56 ? ? H A HIS 60 ? ? 1.53 6 2 O A ARG 23 ? ? H A GLU 31 ? ? 1.57 7 2 O A ILE 59 ? ? H A ASN 63 ? ? 1.60 8 2 O A ASP 21 ? ? H A LEU 33 ? ? 1.60 9 3 O A GLU 56 ? ? H A HIS 60 ? ? 1.55 10 3 O A ILE 59 ? ? H A ASN 63 ? ? 1.56 11 3 H A TYR 32 ? ? O A GLU 47 ? ? 1.58 12 3 O A ASP 21 ? ? H A LEU 33 ? ? 1.59 13 4 O A TYR 58 ? ? H A PHE 62 ? ? 1.56 14 4 O A ILE 59 ? ? H A ASN 63 ? ? 1.60 15 5 O A GLU 56 ? ? H A HIS 60 ? ? 1.58 16 5 O A ILE 59 ? ? H A ASN 63 ? ? 1.58 17 5 O A ARG 23 ? ? H A GLU 31 ? ? 1.59 18 5 H A ASN 25 ? ? O A LYS 29 ? ? 1.59 19 6 H A VAL 20 ? ? O A LEU 33 ? ? 1.50 20 6 O A GLU 56 ? ? H A HIS 60 ? ? 1.51 21 6 H A ASN 25 ? ? O A LYS 29 ? ? 1.58 22 6 O A ILE 59 ? ? H A ASN 63 ? ? 1.59 23 6 O A ASP 21 ? ? H A LEU 33 ? ? 1.60 24 7 O A GLU 56 ? ? H A HIS 60 ? ? 1.50 25 8 O A GLU 56 ? ? H A HIS 60 ? ? 1.53 26 8 O A ARG 23 ? ? H A GLU 31 ? ? 1.58 27 9 H A VAL 20 ? ? O A LEU 33 ? ? 1.50 28 9 O A GLU 56 ? ? H A HIS 60 ? ? 1.55 29 9 O A ILE 59 ? ? H A ASN 63 ? ? 1.55 30 9 O A ARG 23 ? ? H A GLU 31 ? ? 1.57 31 10 O A ASP 21 ? ? H A LEU 33 ? ? 1.60 32 11 O A HIS 60 ? ? H A ARG 64 ? ? 1.54 33 11 O A GLU 56 ? ? H A HIS 60 ? ? 1.57 34 11 H A ASN 25 ? ? O A LYS 29 ? ? 1.57 35 11 O A ASP 21 ? ? H A LEU 33 ? ? 1.60 36 12 O A GLU 56 ? ? H A HIS 60 ? ? 1.51 37 12 H A VAL 20 ? ? O A LEU 33 ? ? 1.51 38 12 O A ILE 59 ? ? H A ASN 63 ? ? 1.52 39 12 O A TYR 58 ? ? H A PHE 62 ? ? 1.60 40 13 H A VAL 20 ? ? O A LEU 33 ? ? 1.58 41 13 O A ILE 59 ? ? H A ASN 63 ? ? 1.59 42 14 H A VAL 20 ? ? O A LEU 33 ? ? 1.59 43 15 O A GLU 56 ? ? H A HIS 60 ? ? 1.50 44 15 O A ARG 23 ? ? H A GLU 31 ? ? 1.52 45 15 O A HIS 60 ? ? H A ARG 64 ? ? 1.58 46 16 O A GLU 56 ? ? H A HIS 60 ? ? 1.50 47 16 O A ARG 23 ? ? H A GLU 31 ? ? 1.53 48 16 H A VAL 20 ? ? O A LEU 33 ? ? 1.53 49 16 O A TYR 58 ? ? H A PHE 62 ? ? 1.60 50 17 O A ARG 23 ? ? H A GLU 31 ? ? 1.56 51 18 H A VAL 20 ? ? O A LEU 33 ? ? 1.48 52 18 O A GLU 56 ? ? H A HIS 60 ? ? 1.52 53 18 O A ILE 59 ? ? H A ASN 63 ? ? 1.58 54 19 O A ARG 23 ? ? H A GLU 31 ? ? 1.52 55 20 O A ASP 40 ? ? H A ASP 43 ? ? 1.43 56 20 H A VAL 20 ? ? O A LEU 33 ? ? 1.48 57 20 O A GLU 56 ? ? H A HIS 60 ? ? 1.51 58 20 O A ARG 23 ? ? H A GLU 31 ? ? 1.54 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 8 ? ? 48.04 86.34 2 1 SER A 10 ? ? 49.72 90.19 3 1 GLU A 11 ? ? 44.54 93.62 4 1 LEU A 13 ? ? -53.58 -73.41 5 1 ARG A 18 ? ? 177.40 168.39 6 1 THR A 67 ? ? -39.28 145.96 7 1 LYS A 69 ? ? 55.67 103.44 8 1 GLN A 70 ? ? -160.26 -57.32 9 2 SER A 3 ? ? -169.29 -58.60 10 2 SER A 6 ? ? -172.74 146.69 11 2 GLU A 11 ? ? 70.20 141.48 12 2 ARG A 18 ? ? 177.24 167.12 13 2 ASP A 40 ? ? -53.29 -176.16 14 2 ASP A 44 ? ? -41.09 157.18 15 2 GLU A 49 ? ? -39.94 -30.79 16 2 GLU A 72 ? ? -65.86 90.96 17 2 SER A 73 ? ? -178.77 93.57 18 2 SER A 77 ? ? 64.58 93.05 19 3 MET A 8 ? ? 49.40 91.66 20 3 SER A 10 ? ? -151.05 -55.18 21 3 GLU A 11 ? ? -152.11 28.16 22 3 LEU A 13 ? ? -76.93 -78.36 23 3 ARG A 18 ? ? 177.33 167.22 24 3 ASP A 40 ? ? -70.02 -166.80 25 3 ASP A 44 ? ? -40.68 152.19 26 3 SER A 76 ? ? 178.51 119.90 27 4 SER A 2 ? ? -132.22 -67.78 28 4 SER A 5 ? ? -149.95 -58.09 29 4 MET A 8 ? ? 58.36 165.14 30 4 ALA A 9 ? ? 62.46 137.59 31 4 SER A 10 ? ? -97.72 -75.70 32 4 ARG A 18 ? ? 177.61 166.41 33 4 GLU A 72 ? ? 56.93 163.73 34 4 SER A 73 ? ? -138.58 -57.57 35 5 SER A 2 ? ? 57.99 164.41 36 5 SER A 3 ? ? -170.76 -57.54 37 5 SER A 5 ? ? -171.95 96.51 38 5 MET A 8 ? ? -166.51 111.98 39 5 GLU A 11 ? ? -178.49 133.55 40 5 ARG A 18 ? ? 177.49 169.30 41 5 ASP A 40 ? ? -54.79 -171.42 42 5 ASP A 44 ? ? -44.92 155.31 43 5 THR A 67 ? ? -48.16 151.81 44 5 LYS A 71 ? ? 63.59 74.28 45 6 SER A 2 ? ? -128.82 -58.41 46 6 SER A 3 ? ? -150.48 -58.33 47 6 SER A 5 ? ? 74.75 -57.98 48 6 MET A 8 ? ? 59.30 149.73 49 6 ALA A 9 ? ? 44.12 91.12 50 6 GLU A 11 ? ? 60.91 128.17 51 6 ARG A 18 ? ? 177.71 165.22 52 6 ASP A 40 ? ? -71.33 -166.92 53 6 GLN A 70 ? ? 64.30 -77.58 54 6 GLU A 72 ? ? -158.55 77.22 55 6 SER A 76 ? ? -167.56 91.38 56 7 SER A 2 ? ? 65.15 103.64 57 7 SER A 3 ? ? -164.59 -58.40 58 7 ALA A 9 ? ? -157.04 84.75 59 7 SER A 10 ? ? 63.76 163.82 60 7 ARG A 18 ? ? 177.15 164.66 61 7 ASP A 40 ? ? -51.19 178.99 62 7 LYS A 71 ? ? 66.09 113.72 63 7 SER A 77 ? ? -168.41 88.86 64 8 SER A 3 ? ? 43.68 91.71 65 8 SER A 5 ? ? -176.53 87.59 66 8 ALA A 9 ? ? 75.41 -62.08 67 8 ARG A 18 ? ? 177.52 165.68 68 8 ASP A 40 ? ? -53.42 -178.38 69 8 GLU A 49 ? ? -39.99 -31.53 70 8 GLN A 70 ? ? 63.70 155.75 71 8 LYS A 71 ? ? -43.92 153.17 72 8 SER A 73 ? ? -52.96 100.16 73 8 SER A 76 ? ? -172.28 147.29 74 9 SER A 6 ? ? 60.11 115.49 75 9 MET A 8 ? ? -171.04 144.08 76 9 GLU A 11 ? ? -176.63 87.23 77 9 ARG A 18 ? ? 177.88 164.93 78 9 ASN A 54 ? ? 59.32 18.36 79 9 LYS A 69 ? ? 69.77 -69.26 80 9 LYS A 71 ? ? 64.28 140.59 81 9 GLU A 72 ? ? 81.21 100.09 82 9 SER A 76 ? ? 66.57 112.65 83 10 SER A 5 ? ? -127.99 -55.98 84 10 SER A 6 ? ? 61.58 165.78 85 10 ALA A 9 ? ? -176.93 -60.32 86 10 ARG A 18 ? ? 177.58 165.61 87 10 ASP A 40 ? ? -63.92 -175.04 88 11 SER A 2 ? ? 179.83 107.52 89 11 SER A 6 ? ? 178.36 163.13 90 11 SER A 10 ? ? -171.07 132.76 91 11 ARG A 18 ? ? 177.25 164.81 92 11 ASP A 40 ? ? -64.07 -158.77 93 11 GLU A 49 ? ? -38.76 -31.77 94 11 GLN A 70 ? ? -45.11 96.16 95 11 GLU A 72 ? ? 64.34 133.24 96 12 SER A 5 ? ? 66.36 135.90 97 12 SER A 6 ? ? 62.04 153.55 98 12 MET A 8 ? ? -174.12 -60.69 99 12 ALA A 9 ? ? -109.68 -64.79 100 12 ARG A 18 ? ? 177.13 165.07 101 12 LYS A 22 ? ? -171.56 128.97 102 12 GLN A 70 ? ? -105.13 49.42 103 12 SER A 76 ? ? 65.93 161.14 104 13 SER A 2 ? ? 67.85 117.12 105 13 SER A 3 ? ? 176.44 158.84 106 13 SER A 5 ? ? -170.83 136.75 107 13 SER A 6 ? ? 175.84 136.81 108 13 MET A 8 ? ? -166.64 92.92 109 13 ALA A 9 ? ? -173.53 -59.24 110 13 SER A 10 ? ? -47.84 174.67 111 13 GLU A 11 ? ? 178.03 145.12 112 13 ARG A 18 ? ? 177.59 168.41 113 13 ASP A 44 ? ? -39.73 132.61 114 13 GLU A 56 ? ? -36.01 -39.40 115 13 GLN A 70 ? ? -174.76 95.04 116 13 GLU A 72 ? ? 65.95 88.65 117 14 SER A 2 ? ? 71.66 -63.50 118 14 SER A 3 ? ? 62.10 122.24 119 14 MET A 8 ? ? -168.15 -54.84 120 14 SER A 10 ? ? -161.31 117.61 121 14 ARG A 18 ? ? 177.76 166.20 122 14 ASP A 40 ? ? -63.15 -156.90 123 14 ASP A 44 ? ? -39.34 152.11 124 14 LYS A 69 ? ? 72.05 -70.04 125 14 GLN A 70 ? ? -133.87 -59.26 126 14 LYS A 71 ? ? 66.80 135.30 127 14 GLU A 72 ? ? -178.22 124.42 128 14 SER A 73 ? ? 65.02 85.43 129 14 SER A 76 ? ? 51.67 80.77 130 14 SER A 77 ? ? -163.13 -58.06 131 15 SER A 2 ? ? -138.63 -58.42 132 15 ALA A 9 ? ? 75.83 118.49 133 15 TYR A 14 ? ? -129.78 -168.31 134 15 ARG A 18 ? ? 177.73 167.88 135 15 ASP A 40 ? ? -82.12 -157.34 136 15 ASN A 54 ? ? 58.92 16.95 137 15 LYS A 69 ? ? -142.57 -59.96 138 15 GLN A 70 ? ? -47.00 -70.66 139 15 GLU A 72 ? ? 59.78 165.85 140 15 SER A 77 ? ? 178.41 143.54 141 16 ALA A 9 ? ? 63.70 97.02 142 16 SER A 10 ? ? 63.63 169.07 143 16 ARG A 18 ? ? 177.64 163.66 144 16 ASP A 44 ? ? -37.48 154.89 145 16 GLN A 70 ? ? -179.15 71.73 146 16 LYS A 71 ? ? -173.15 137.08 147 16 SER A 73 ? ? -170.60 148.49 148 16 SER A 76 ? ? 178.46 136.03 149 17 SER A 2 ? ? 55.00 96.89 150 17 SER A 3 ? ? -171.36 121.98 151 17 SER A 5 ? ? 174.44 151.27 152 17 MET A 8 ? ? 178.26 87.14 153 17 ALA A 9 ? ? -175.56 121.45 154 17 SER A 10 ? ? 169.20 -171.62 155 17 ARG A 18 ? ? 177.54 169.36 156 17 ASP A 40 ? ? -51.34 178.71 157 17 ASP A 44 ? ? -40.06 156.89 158 17 LYS A 69 ? ? -165.24 -59.45 159 17 GLN A 70 ? ? 70.72 -63.91 160 17 LYS A 71 ? ? 66.69 144.49 161 17 GLU A 72 ? ? 60.12 103.69 162 17 SER A 76 ? ? -141.83 -58.30 163 18 SER A 2 ? ? -147.42 -58.49 164 18 SER A 3 ? ? -143.12 -58.59 165 18 GLU A 11 ? ? -173.18 89.99 166 18 ARG A 18 ? ? 177.65 164.27 167 18 LYS A 22 ? ? -172.27 131.70 168 18 ASP A 40 ? ? -57.90 -167.08 169 18 ASP A 44 ? ? -40.70 159.18 170 18 GLU A 68 ? ? 59.33 166.82 171 18 LYS A 69 ? ? 66.25 105.20 172 18 GLN A 70 ? ? 54.81 77.14 173 18 LYS A 71 ? ? -174.81 -66.16 174 18 GLU A 72 ? ? 66.32 123.58 175 19 SER A 2 ? ? -122.07 -58.58 176 19 SER A 3 ? ? 55.71 94.03 177 19 ARG A 18 ? ? 177.68 167.26 178 19 ASP A 40 ? ? -50.84 -179.82 179 19 ASP A 44 ? ? -40.03 153.47 180 19 ASN A 54 ? ? 57.53 19.07 181 19 LYS A 71 ? ? 40.84 77.57 182 19 SER A 73 ? ? -163.20 84.66 183 20 ALA A 9 ? ? 61.92 96.95 184 20 SER A 10 ? ? -134.16 -45.91 185 20 GLU A 11 ? ? 52.22 88.21 186 20 ARG A 18 ? ? 178.35 164.45 187 20 SER A 41 ? ? -38.62 -31.61 188 20 ASP A 43 ? ? -108.83 42.38 189 20 ASP A 44 ? ? -46.65 171.10 190 20 GLN A 70 ? ? 71.86 -59.31 #