data_2DNV # _entry.id 2DNV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DNV pdb_00002dnv 10.2210/pdb2dnv/pdb RCSB RCSB025633 ? ? WWPDB D_1000025633 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id mmi002020274.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DNV _pdbx_database_status.recvd_initial_deposition_date 2006-04-26 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ruhul Momen, A.Z.M.' 1 'Hirota, H.' 2 'Tomizawa, T.' 3 'Kigawa, T.' 4 'Yokoyama, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title 'Solution Structure of RSGI RUH-055, a Chromo Domain from Mus musculus cDNA' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ruhul Momen, A.Z.M.' 1 ? primary 'Hirota, H.' 2 ? primary 'Tomizawa, T.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Yokoyama, S.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Chromobox protein homolog 8' _entity.formula_weight 7187.098 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'Methylated histone H3 tail binding domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Polycomb 3 homolog, Pc3, MPc3, Chromo domain, Chromatin organization modifier domain' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSSGSSGERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFESGPSSG _entity_poly.pdbx_seq_one_letter_code_can GSSGSSGERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFESGPSSG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier mmi002020274.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 GLU n 1 9 ARG n 1 10 VAL n 1 11 PHE n 1 12 ALA n 1 13 ALA n 1 14 GLU n 1 15 ALA n 1 16 LEU n 1 17 LEU n 1 18 LYS n 1 19 ARG n 1 20 ARG n 1 21 ILE n 1 22 ARG n 1 23 LYS n 1 24 GLY n 1 25 ARG n 1 26 MET n 1 27 GLU n 1 28 TYR n 1 29 LEU n 1 30 VAL n 1 31 LYS n 1 32 TRP n 1 33 LYS n 1 34 GLY n 1 35 TRP n 1 36 SER n 1 37 GLN n 1 38 LYS n 1 39 TYR n 1 40 SER n 1 41 THR n 1 42 TRP n 1 43 GLU n 1 44 PRO n 1 45 GLU n 1 46 GLU n 1 47 ASN n 1 48 ILE n 1 49 LEU n 1 50 ASP n 1 51 ALA n 1 52 ARG n 1 53 LEU n 1 54 LEU n 1 55 ALA n 1 56 ALA n 1 57 PHE n 1 58 GLU n 1 59 SER n 1 60 GLY n 1 61 PRO n 1 62 SER n 1 63 SER n 1 64 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050711-03 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CBX8_MOUSE _struct_ref.pdbx_db_accession Q9QXV1 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 7 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DNV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 58 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9QXV1 _struct_ref_seq.db_align_beg 7 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 58 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 58 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DNV GLY A 1 ? UNP Q9QXV1 ? ? 'cloning artifact' 1 1 1 2DNV SER A 2 ? UNP Q9QXV1 ? ? 'cloning artifact' 2 2 1 2DNV SER A 3 ? UNP Q9QXV1 ? ? 'cloning artifact' 3 3 1 2DNV GLY A 4 ? UNP Q9QXV1 ? ? 'cloning artifact' 4 4 1 2DNV SER A 5 ? UNP Q9QXV1 ? ? 'cloning artifact' 5 5 1 2DNV SER A 6 ? UNP Q9QXV1 ? ? 'cloning artifact' 6 6 1 2DNV GLY A 7 ? UNP Q9QXV1 ? ? 'cloning artifact' 7 7 1 2DNV SER A 59 ? UNP Q9QXV1 ? ? 'cloning artifact' 59 8 1 2DNV GLY A 60 ? UNP Q9QXV1 ? ? 'cloning artifact' 60 9 1 2DNV PRO A 61 ? UNP Q9QXV1 ? ? 'cloning artifact' 61 10 1 2DNV SER A 62 ? UNP Q9QXV1 ? ? 'cloning artifact' 62 11 1 2DNV SER A 63 ? UNP Q9QXV1 ? ? 'cloning artifact' 63 12 1 2DNV GLY A 64 ? UNP Q9QXV1 ? ? 'cloning artifact' 64 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_13C-separated_NOESY 1 2 1 3D_15N-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure Ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength '120mM NaCl' _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;0.53mM domain U-15N, 13C; 20mM d-Tris-HCl(pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O, 90% H2O ; _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DNV _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DNV _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DNV _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.6 Bruker 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMRView 5.04 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.955 'Kobayashi, N.' 4 'structure solution' CYANA 1.0.7 'Guntert, P.' 5 refinement CYANA 1.0.7 'Guntert, P.' 6 # _exptl.entry_id 2DNV _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DNV _struct.title 'Solution Structure of RSGI RUH-055, a Chromo Domain from Mus musculus cDNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DNV _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text ;Chromo domain, Histone H3 tail, Choromatin organization modifier, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, TRANSCRIPTION ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ASP _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 50 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id SER _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 59 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ASP _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 50 _struct_conf.end_auth_comp_id SER _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 59 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 16 ? ILE A 21 ? LEU A 16 ILE A 21 A 2 MET A 26 ? VAL A 30 ? MET A 26 VAL A 30 A 3 TRP A 42 ? PRO A 44 ? TRP A 42 PRO A 44 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 17 ? N LEU A 17 O LEU A 29 ? O LEU A 29 A 2 3 N TYR A 28 ? N TYR A 28 O GLU A 43 ? O GLU A 43 # _database_PDB_matrix.entry_id 2DNV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DNV _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 PHE 11 11 11 PHE PHE A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 MET 26 26 26 MET MET A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 TYR 28 28 28 TYR TYR A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 TRP 32 32 32 TRP TRP A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 TRP 35 35 35 TRP TRP A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 TYR 39 39 39 TYR TYR A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 THR 41 41 41 THR THR A . n A 1 42 TRP 42 42 42 TRP TRP A . n A 1 43 GLU 43 43 43 GLU GLU A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 ILE 48 48 48 ILE ILE A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 ARG 52 52 52 ARG ARG A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 PHE 57 57 57 PHE PHE A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 PRO 61 61 61 PRO PRO A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 GLY 64 64 64 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-10-26 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A VAL 30 ? ? HG A SER 40 ? ? 1.43 2 1 O A PRO 44 ? ? H A ASN 47 ? ? 1.57 3 1 H A LEU 17 ? ? O A LEU 29 ? ? 1.57 4 2 HE1 A TRP 32 ? ? OG1 A THR 41 ? ? 1.51 5 2 O A ARG 20 ? ? H A GLU 27 ? ? 1.57 6 4 HE1 A TRP 32 ? ? OG1 A THR 41 ? ? 1.56 7 4 O A LYS 18 ? ? H A LEU 29 ? ? 1.58 8 5 O A PRO 44 ? ? H A ASN 47 ? ? 1.55 9 5 HE1 A TRP 32 ? ? OG1 A THR 41 ? ? 1.59 10 5 O A LYS 33 ? ? H A SER 36 ? ? 1.60 11 6 HE1 A TRP 32 ? ? OG1 A THR 41 ? ? 1.50 12 6 O A LEU 53 ? ? H A PHE 57 ? ? 1.54 13 6 O A PRO 44 ? ? H A ASN 47 ? ? 1.54 14 7 O A PRO 44 ? ? H A ASN 47 ? ? 1.57 15 8 O A ARG 20 ? ? H A GLU 27 ? ? 1.60 16 9 O A PRO 44 ? ? H A ASN 47 ? ? 1.54 17 9 HE1 A TRP 32 ? ? OG1 A THR 41 ? ? 1.55 18 9 O A LEU 53 ? ? H A PHE 57 ? ? 1.59 19 10 O A PRO 44 ? ? H A ASN 47 ? ? 1.57 20 10 HE1 A TRP 32 ? ? OG1 A THR 41 ? ? 1.57 21 11 H A ARG 20 ? ? O A GLU 27 ? ? 1.51 22 11 O A ALA 55 ? ? H A SER 59 ? ? 1.52 23 11 H A LEU 17 ? ? O A LEU 29 ? ? 1.53 24 12 O A LEU 53 ? ? H A PHE 57 ? ? 1.60 25 14 O A PRO 44 ? ? H A ASN 47 ? ? 1.55 26 14 O A LYS 18 ? ? H A LEU 29 ? ? 1.56 27 15 HE1 A TRP 32 ? ? OG1 A THR 41 ? ? 1.50 28 15 O A PRO 44 ? ? H A ASN 47 ? ? 1.57 29 15 O A LYS 18 ? ? H A LEU 29 ? ? 1.59 30 16 O A ARG 20 ? ? H A GLU 27 ? ? 1.58 31 18 O A ALA 51 ? ? H A ALA 55 ? ? 1.56 32 19 HE1 A TRP 32 ? ? OG1 A THR 41 ? ? 1.55 33 19 O A LYS 18 ? ? H A LEU 29 ? ? 1.56 34 20 HE1 A TRP 32 ? ? OG1 A THR 41 ? ? 1.47 35 20 O A LEU 53 ? ? H A PHE 57 ? ? 1.58 36 20 O A VAL 30 ? ? HG A SER 40 ? ? 1.59 37 20 O A ARG 20 ? ? H A GLU 27 ? ? 1.59 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 2 ? ? 60.34 103.72 2 1 SER A 6 ? ? -175.69 102.75 3 1 ALA A 12 ? ? -179.26 92.01 4 1 ALA A 15 ? ? -175.27 -175.16 5 1 LYS A 23 ? ? -171.19 51.02 6 1 LEU A 29 ? ? -66.04 93.85 7 1 LYS A 38 ? ? 76.39 175.97 8 1 SER A 40 ? ? 73.12 -165.62 9 1 ILE A 48 ? ? -58.12 104.40 10 1 ASP A 50 ? ? -94.78 33.18 11 1 SER A 59 ? ? 66.50 126.41 12 1 SER A 62 ? ? 178.68 -53.08 13 1 SER A 63 ? ? 39.51 90.09 14 2 SER A 2 ? ? 40.57 81.05 15 2 SER A 3 ? ? 49.48 92.26 16 2 VAL A 10 ? ? 62.02 145.79 17 2 ALA A 12 ? ? -179.43 72.63 18 2 ALA A 15 ? ? -177.46 -174.03 19 2 LYS A 23 ? ? -165.79 44.99 20 2 SER A 36 ? ? -42.69 160.74 21 2 GLN A 37 ? ? -51.78 99.60 22 2 LYS A 38 ? ? 165.10 -173.81 23 2 TYR A 39 ? ? 35.88 48.51 24 2 ILE A 48 ? ? -53.23 106.17 25 2 ASP A 50 ? ? -95.35 33.00 26 2 SER A 62 ? ? -110.62 79.62 27 3 SER A 2 ? ? -132.30 -58.27 28 3 SER A 3 ? ? 62.83 85.15 29 3 SER A 5 ? ? 43.16 88.86 30 3 SER A 6 ? ? -162.68 -58.74 31 3 GLU A 8 ? ? 40.56 73.03 32 3 ARG A 9 ? ? 177.78 101.68 33 3 GLU A 14 ? ? -131.32 -44.54 34 3 ARG A 20 ? ? -171.06 -173.80 35 3 LYS A 23 ? ? 179.84 38.60 36 3 LYS A 31 ? ? -109.18 79.42 37 3 LYS A 38 ? ? 72.39 -60.53 38 3 TYR A 39 ? ? -86.79 49.77 39 3 SER A 40 ? ? -57.51 -161.82 40 3 ILE A 48 ? ? -40.47 108.03 41 3 ASP A 50 ? ? -92.73 33.07 42 3 SER A 59 ? ? -178.62 127.30 43 4 SER A 2 ? ? -42.60 159.57 44 4 SER A 6 ? ? -171.05 -58.40 45 4 ARG A 9 ? ? -156.35 77.39 46 4 ALA A 15 ? ? -176.27 -175.05 47 4 LYS A 23 ? ? -173.31 48.54 48 4 TRP A 32 ? ? -48.97 154.80 49 4 TRP A 35 ? ? -145.01 -56.96 50 4 SER A 36 ? ? -178.68 74.69 51 4 GLN A 37 ? ? -63.94 76.71 52 4 LYS A 38 ? ? 171.26 -41.07 53 4 TYR A 39 ? ? -92.72 32.76 54 4 SER A 40 ? ? -44.81 168.35 55 4 SER A 63 ? ? -177.21 118.16 56 5 SER A 5 ? ? 46.86 81.02 57 5 ARG A 9 ? ? 49.14 83.54 58 5 VAL A 10 ? ? -91.61 42.61 59 5 PHE A 11 ? ? -38.83 158.73 60 5 ALA A 12 ? ? -176.04 66.21 61 5 LYS A 23 ? ? -120.36 -63.76 62 5 LEU A 29 ? ? -68.06 78.81 63 5 LYS A 31 ? ? -105.76 74.88 64 5 LYS A 33 ? ? -57.61 -179.89 65 5 LYS A 38 ? ? -93.55 34.68 66 5 TYR A 39 ? ? -144.07 55.61 67 5 SER A 63 ? ? 60.85 158.08 68 6 SER A 2 ? ? -176.88 147.45 69 6 SER A 5 ? ? -151.04 -48.61 70 6 GLU A 8 ? ? 65.99 104.12 71 6 ARG A 22 ? ? -102.14 62.26 72 6 SER A 36 ? ? -178.72 126.95 73 6 LYS A 38 ? ? -179.17 -69.63 74 6 TYR A 39 ? ? -97.82 30.77 75 6 SER A 40 ? ? 64.65 -165.08 76 6 ILE A 48 ? ? -57.19 108.07 77 6 SER A 59 ? ? 59.82 167.29 78 6 SER A 63 ? ? -169.33 -58.59 79 7 SER A 3 ? ? 65.45 86.35 80 7 SER A 6 ? ? 57.00 85.69 81 7 GLU A 14 ? ? -134.61 -45.12 82 7 ARG A 22 ? ? -80.78 -70.47 83 7 LYS A 23 ? ? -113.66 -70.18 84 7 LYS A 31 ? ? -103.98 72.79 85 7 LYS A 38 ? ? 174.76 -45.26 86 7 TYR A 39 ? ? -101.55 50.72 87 7 SER A 40 ? ? -54.73 -175.09 88 7 SER A 59 ? ? 61.39 174.94 89 8 SER A 5 ? ? -128.09 -53.14 90 8 SER A 6 ? ? 67.02 -71.79 91 8 ARG A 9 ? ? -167.27 91.26 92 8 ALA A 12 ? ? -157.18 87.42 93 8 ALA A 15 ? ? -174.44 -178.57 94 8 LYS A 23 ? ? -177.63 51.73 95 8 SER A 36 ? ? 60.83 121.11 96 8 GLN A 37 ? ? 39.73 69.39 97 8 LYS A 38 ? ? -170.45 -74.76 98 8 TYR A 39 ? ? -91.61 34.98 99 8 SER A 59 ? ? 61.96 115.10 100 9 SER A 5 ? ? 64.15 167.75 101 9 SER A 6 ? ? 48.45 77.19 102 9 VAL A 10 ? ? 65.02 144.34 103 9 ALA A 13 ? ? -48.37 153.21 104 9 GLU A 14 ? ? -134.41 -45.30 105 9 SER A 36 ? ? -44.70 104.76 106 9 GLN A 37 ? ? 54.76 172.74 107 9 LYS A 38 ? ? 63.81 -172.97 108 9 TYR A 39 ? ? 35.93 49.12 109 9 ILE A 48 ? ? -56.67 106.59 110 9 ASP A 50 ? ? -98.48 33.05 111 10 SER A 2 ? ? -157.85 -58.87 112 10 SER A 6 ? ? 62.69 111.31 113 10 ARG A 9 ? ? -175.37 93.91 114 10 ALA A 15 ? ? -175.20 -176.11 115 10 LYS A 23 ? ? -122.28 -69.84 116 10 TRP A 35 ? ? -163.91 -45.34 117 10 LYS A 38 ? ? 67.10 170.33 118 10 TYR A 39 ? ? 36.13 62.91 119 10 SER A 40 ? ? -63.49 -154.64 120 10 ILE A 48 ? ? -51.76 108.98 121 10 SER A 59 ? ? 47.53 96.00 122 10 SER A 62 ? ? -156.78 -61.82 123 11 SER A 2 ? ? -131.74 -58.71 124 11 SER A 3 ? ? 65.71 121.06 125 11 SER A 6 ? ? 62.80 165.53 126 11 ARG A 9 ? ? 48.78 87.37 127 11 ALA A 15 ? ? -173.79 -176.09 128 11 ARG A 22 ? ? -93.72 59.39 129 11 LYS A 23 ? ? 81.01 -54.33 130 11 LYS A 31 ? ? -107.08 79.98 131 11 TRP A 35 ? ? 179.80 159.74 132 11 SER A 36 ? ? -177.88 87.97 133 11 LYS A 38 ? ? -178.22 112.89 134 11 TYR A 39 ? ? 36.14 41.97 135 11 SER A 40 ? ? 56.42 -172.62 136 11 SER A 59 ? ? -177.33 132.48 137 11 SER A 62 ? ? -145.82 -70.13 138 12 SER A 2 ? ? -171.25 111.65 139 12 SER A 5 ? ? 60.16 156.78 140 12 ARG A 9 ? ? -174.33 98.22 141 12 ALA A 12 ? ? -162.63 67.03 142 12 ALA A 13 ? ? -44.61 153.89 143 12 LYS A 23 ? ? 85.86 -49.40 144 12 LEU A 29 ? ? -67.23 79.81 145 12 VAL A 30 ? ? -49.72 150.50 146 12 TRP A 35 ? ? -53.71 173.77 147 12 GLN A 37 ? ? 65.06 -174.47 148 12 LYS A 38 ? ? -91.29 38.63 149 12 TYR A 39 ? ? -111.04 61.50 150 12 SER A 40 ? ? -111.12 -167.31 151 12 ASP A 50 ? ? -92.69 33.04 152 12 SER A 59 ? ? 49.61 96.09 153 13 SER A 2 ? ? -170.28 119.44 154 13 SER A 5 ? ? 178.96 101.64 155 13 GLU A 8 ? ? 62.86 164.65 156 13 ARG A 9 ? ? 55.74 85.99 157 13 ALA A 15 ? ? -175.53 -177.70 158 13 ARG A 22 ? ? -84.77 48.77 159 13 LYS A 23 ? ? 57.51 18.81 160 13 LEU A 29 ? ? -65.38 88.32 161 13 SER A 36 ? ? -62.80 -81.51 162 13 LYS A 38 ? ? 71.85 -167.94 163 13 TYR A 39 ? ? 36.27 61.62 164 13 ASP A 50 ? ? -91.89 33.48 165 13 SER A 59 ? ? -175.43 106.59 166 13 SER A 62 ? ? 49.28 77.65 167 14 SER A 2 ? ? -56.30 101.39 168 14 SER A 6 ? ? 47.22 82.58 169 14 GLU A 8 ? ? 58.12 168.68 170 14 VAL A 10 ? ? 63.39 125.84 171 14 LYS A 23 ? ? -119.83 -71.06 172 14 LYS A 33 ? ? -40.30 153.34 173 14 GLN A 37 ? ? -158.63 -44.19 174 14 SER A 40 ? ? 73.65 157.35 175 14 SER A 59 ? ? 64.51 172.69 176 14 SER A 62 ? ? 62.60 117.43 177 15 ARG A 9 ? ? 52.33 87.03 178 15 ALA A 12 ? ? -159.33 74.17 179 15 ALA A 15 ? ? -174.40 -179.05 180 15 LYS A 23 ? ? 68.43 -78.22 181 15 LEU A 29 ? ? -68.45 86.77 182 15 GLN A 37 ? ? -148.88 59.83 183 15 TYR A 39 ? ? -84.04 46.07 184 15 SER A 40 ? ? 63.87 160.84 185 15 ILE A 48 ? ? -50.46 108.29 186 15 SER A 59 ? ? 50.11 91.02 187 16 SER A 2 ? ? -124.55 -58.59 188 16 SER A 3 ? ? 58.15 169.53 189 16 SER A 5 ? ? -171.64 102.09 190 16 ARG A 9 ? ? -173.61 135.67 191 16 ARG A 22 ? ? -92.33 -66.51 192 16 LYS A 23 ? ? -156.13 32.83 193 16 LYS A 38 ? ? -177.25 -52.94 194 16 SER A 40 ? ? -48.77 172.20 195 16 ASP A 50 ? ? -92.21 33.20 196 16 SER A 59 ? ? 50.31 88.65 197 16 SER A 63 ? ? 74.41 -58.58 198 17 SER A 3 ? ? 59.12 165.42 199 17 LYS A 23 ? ? -142.50 48.88 200 17 LEU A 29 ? ? -69.90 86.06 201 17 TRP A 35 ? ? -152.46 65.36 202 17 GLN A 37 ? ? -161.66 -83.05 203 17 LYS A 38 ? ? -163.45 29.86 204 17 TYR A 39 ? ? -116.85 50.60 205 17 ASP A 50 ? ? -94.44 33.55 206 17 SER A 59 ? ? -47.09 154.86 207 17 SER A 62 ? ? -171.92 145.63 208 18 SER A 2 ? ? 64.11 125.55 209 18 SER A 3 ? ? 61.02 157.73 210 18 ALA A 12 ? ? -157.71 70.33 211 18 ALA A 15 ? ? -174.56 -177.07 212 18 LYS A 23 ? ? 77.22 -56.94 213 18 LYS A 38 ? ? -179.39 -62.87 214 18 TYR A 39 ? ? -89.77 47.29 215 18 ILE A 48 ? ? -57.73 108.84 216 18 LEU A 49 ? ? -98.36 41.52 217 18 SER A 59 ? ? 63.39 101.60 218 18 SER A 63 ? ? -46.90 167.05 219 19 SER A 5 ? ? 73.83 -58.56 220 19 ARG A 9 ? ? -57.63 101.67 221 19 ALA A 12 ? ? -158.86 64.97 222 19 ALA A 15 ? ? -173.35 -173.74 223 19 LYS A 23 ? ? -174.66 51.95 224 19 SER A 36 ? ? -41.95 158.22 225 19 TYR A 39 ? ? 36.19 52.08 226 20 SER A 6 ? ? -179.00 113.27 227 20 ARG A 9 ? ? -177.53 148.93 228 20 PHE A 11 ? ? -53.01 103.91 229 20 ALA A 15 ? ? 178.39 -174.25 230 20 LYS A 23 ? ? -170.98 36.92 231 20 LYS A 31 ? ? -100.91 74.28 232 20 TRP A 32 ? ? -47.28 160.61 233 20 GLN A 37 ? ? -153.86 45.20 234 20 LYS A 38 ? ? 71.80 -61.17 235 20 TYR A 39 ? ? -38.87 -37.04 236 20 SER A 40 ? ? 48.49 -163.76 237 20 SER A 59 ? ? 47.80 95.12 #