HEADER TRANSPORT PROTEIN 26-APR-06 2DNX TITLE SOLUTION STRUCTURE OF RSGI RUH-063, AN N-TERMINAL DOMAIN OF SYNTAXIN TITLE 2 12 FROM HUMAN CDNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYNTAXIN-12; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, RESIDUES 8-124; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: STX12; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050302-94; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS SYNTAXIN, SNARE, HABC DOMAIN, UP AND DOWN THREE HELIX BUNDLE, LEFT- KEYWDS 2 HANDED TWIST, MEMBRANE FUSION, VESICLE TRANSPORT, STRUCTURAL KEYWDS 3 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 4 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 5 INITIATIVE, RSGI, TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.ABE,H.HIROTA,Y.MUTO,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DNX 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DNX 1 VERSN REVDAT 1 26-OCT-06 2DNX 0 JRNL AUTH T.ABE,H.HIROTA,Y.MUTO,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RSGI RUH-063, AN N-TERMINAL DOMAIN OF JRNL TITL 2 SYNTAXIN 12 FROM HUMAN CDNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 1.0.8 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DNX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000025635. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.35MM RSGI RUH-063 U-15N, 13C; REMARK 210 20MM D-TRIS-HCL; 100MM NACL; 1MM REMARK 210 D-DTT; 0.02% NAN3; 10% D2O, 90% REMARK 210 H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : JEOL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN A 32 H LEU A 36 1.52 REMARK 500 O ARG A 87 H LEU A 91 1.56 REMARK 500 O ASP A 11 H ILE A 15 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 104.68 -174.16 REMARK 500 1 SER A 6 -58.26 -170.69 REMARK 500 1 GLN A 8 80.53 66.74 REMARK 500 1 THR A 42 46.43 -142.77 REMARK 500 1 LYS A 43 -59.40 74.54 REMARK 500 1 LEU A 77 157.31 -47.03 REMARK 500 1 ALA A 123 -90.55 54.36 REMARK 500 1 ARG A 124 89.31 78.27 REMARK 500 2 SER A 2 161.35 64.05 REMARK 500 2 GLN A 8 108.95 58.62 REMARK 500 2 ARG A 10 76.25 43.68 REMARK 500 2 SER A 46 101.66 -170.88 REMARK 500 2 GLN A 54 -70.14 -51.74 REMARK 500 2 GLN A 89 -70.36 -74.96 REMARK 500 2 ALA A 123 -171.42 -57.78 REMARK 500 2 SER A 125 90.77 50.32 REMARK 500 3 SER A 2 133.94 -39.92 REMARK 500 3 SER A 3 94.69 -175.44 REMARK 500 3 SER A 5 85.12 61.82 REMARK 500 3 GLN A 8 65.91 -152.26 REMARK 500 3 GLN A 39 -70.57 -40.50 REMARK 500 3 THR A 42 -47.01 -155.42 REMARK 500 3 LYS A 43 64.52 73.36 REMARK 500 3 GLN A 44 71.83 -164.04 REMARK 500 3 ASP A 45 134.31 63.06 REMARK 500 3 SER A 46 69.11 164.57 REMARK 500 3 PRO A 78 -163.29 -74.95 REMARK 500 3 ALA A 123 156.20 -46.68 REMARK 500 3 SER A 125 -60.51 -100.38 REMARK 500 4 SER A 2 170.91 62.51 REMARK 500 4 GLN A 8 -172.81 62.09 REMARK 500 4 ARG A 10 71.44 47.80 REMARK 500 4 LYS A 43 177.96 163.80 REMARK 500 4 ASP A 45 -60.08 73.30 REMARK 500 4 LEU A 77 156.83 -41.87 REMARK 500 4 ALA A 123 -176.88 72.23 REMARK 500 4 SER A 129 110.31 -173.10 REMARK 500 5 SER A 2 137.06 62.28 REMARK 500 5 SER A 3 134.73 -173.71 REMARK 500 5 GLN A 8 143.27 61.27 REMARK 500 5 LEU A 9 154.07 -47.13 REMARK 500 5 ARG A 10 75.53 -66.64 REMARK 500 5 THR A 42 170.90 -53.67 REMARK 500 5 GLN A 44 85.24 -158.97 REMARK 500 5 LEU A 77 156.89 -43.14 REMARK 500 5 PRO A 78 -164.78 -75.02 REMARK 500 5 ARG A 124 -63.56 -160.29 REMARK 500 5 SER A 125 71.77 81.54 REMARK 500 5 SER A 128 -64.74 -163.89 REMARK 500 5 SER A 129 88.64 70.65 REMARK 500 REMARK 500 THIS ENTRY HAS 231 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002000522.1 RELATED DB: TARGETDB DBREF 2DNX A 8 124 UNP Q86Y82 STX12_HUMAN 18 134 SEQADV 2DNX GLY A 1 UNP Q86Y82 CLONING ARTIFACT SEQADV 2DNX SER A 2 UNP Q86Y82 CLONING ARTIFACT SEQADV 2DNX SER A 3 UNP Q86Y82 CLONING ARTIFACT SEQADV 2DNX GLY A 4 UNP Q86Y82 CLONING ARTIFACT SEQADV 2DNX SER A 5 UNP Q86Y82 CLONING ARTIFACT SEQADV 2DNX SER A 6 UNP Q86Y82 CLONING ARTIFACT SEQADV 2DNX GLY A 7 UNP Q86Y82 CLONING ARTIFACT SEQADV 2DNX SER A 125 UNP Q86Y82 CLONING ARTIFACT SEQADV 2DNX GLY A 126 UNP Q86Y82 CLONING ARTIFACT SEQADV 2DNX PRO A 127 UNP Q86Y82 CLONING ARTIFACT SEQADV 2DNX SER A 128 UNP Q86Y82 CLONING ARTIFACT SEQADV 2DNX SER A 129 UNP Q86Y82 CLONING ARTIFACT SEQADV 2DNX GLY A 130 UNP Q86Y82 CLONING ARTIFACT SEQRES 1 A 130 GLY SER SER GLY SER SER GLY GLN LEU ARG ASP PHE SER SEQRES 2 A 130 SER ILE ILE GLN THR CYS SER GLY ASN ILE GLN ARG ILE SEQRES 3 A 130 SER GLN ALA THR ALA GLN ILE LYS ASN LEU MET SER GLN SEQRES 4 A 130 LEU GLY THR LYS GLN ASP SER SER LYS LEU GLN GLU ASN SEQRES 5 A 130 LEU GLN GLN LEU GLN HIS SER THR ASN GLN LEU ALA LYS SEQRES 6 A 130 GLU THR ASN GLU LEU LEU LYS GLU LEU GLY SER LEU PRO SEQRES 7 A 130 LEU PRO LEU SER THR SER GLU GLN ARG GLN GLN ARG LEU SEQRES 8 A 130 GLN LYS GLU ARG LEU MET ASN ASP PHE SER ALA ALA LEU SEQRES 9 A 130 ASN ASN PHE GLN ALA VAL GLN ARG ARG VAL SER GLU LYS SEQRES 10 A 130 GLU LYS GLU SER ILE ALA ARG SER GLY PRO SER SER GLY HELIX 1 1 ASP A 11 GLY A 41 1 31 HELIX 2 2 SER A 46 LEU A 77 1 32 HELIX 3 3 SER A 82 ALA A 123 1 42 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1