HEADER RNA BINDING PROTEIN 27-APR-06 2DNY TITLE SOLUTION STRUCTURE OF THE THIRD RNA BINDING DOMAIN OF FBP-INTERACTING TITLE 2 REPRESSOR, SIAHBP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUSE-BINDING PROTEIN-INTERACTING REPRESSOR, ISOFORM B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SIAHBP1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050509-16; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS RNA RECOGNITION MOTIF, RRM, RNA BINDING DOMAIN, RBD, RNP, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.SUZUKI,T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DNY 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DNY 1 VERSN REVDAT 1 17-APR-07 2DNY 0 JRNL AUTH S.SUZUKI,T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE THIRD RNA BINDING DOMAIN OF JRNL TITL 2 FBP-INTERACTING REPRESSOR, SIAHBP1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DNY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000025636. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.14MM 13C/15N-PROTEIN; 20MM D REMARK 210 -TRIS-HCL(PH7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9321, OLIVIA 1.10.5, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYANAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 439 42.57 -81.84 REMARK 500 1 PRO A 455 2.01 -69.78 REMARK 500 1 ILE A 458 108.47 -47.57 REMARK 500 1 ALA A 492 -176.16 -51.73 REMARK 500 1 ALA A 514 -63.53 -94.73 REMARK 500 1 ALA A 521 84.82 -51.89 REMARK 500 1 SER A 538 44.53 -98.63 REMARK 500 1 PRO A 545 95.42 -69.78 REMARK 500 2 GLU A 443 138.12 -39.75 REMARK 500 2 ILE A 458 101.48 -55.19 REMARK 500 2 ALA A 521 85.30 -51.85 REMARK 500 2 SER A 538 41.62 -93.95 REMARK 500 3 LYS A 441 36.46 -86.84 REMARK 500 3 GLN A 442 92.06 -56.85 REMARK 500 3 ASN A 451 44.31 70.39 REMARK 500 3 ILE A 458 123.28 -36.52 REMARK 500 3 ALA A 492 -177.85 -50.63 REMARK 500 3 ALA A 521 83.78 -53.24 REMARK 500 3 SER A 538 44.87 -82.29 REMARK 500 3 ASP A 539 51.27 -118.15 REMARK 500 3 LEU A 540 33.84 -95.00 REMARK 500 3 ALA A 542 -71.13 -122.40 REMARK 500 3 SER A 543 -68.23 -101.55 REMARK 500 4 SER A 435 116.81 -37.52 REMARK 500 4 LYS A 437 146.69 -39.95 REMARK 500 4 LEU A 439 88.72 -69.28 REMARK 500 4 GLN A 442 91.25 -52.85 REMARK 500 4 PRO A 455 2.83 -69.78 REMARK 500 4 ILE A 458 100.24 -34.03 REMARK 500 4 ALA A 492 -178.29 -51.68 REMARK 500 4 ALA A 521 98.09 -48.95 REMARK 500 4 SER A 538 45.94 -83.18 REMARK 500 4 SER A 543 94.99 -56.82 REMARK 500 4 PRO A 545 2.87 -69.74 REMARK 500 5 SER A 432 78.13 -117.32 REMARK 500 5 ASN A 451 36.67 73.99 REMARK 500 5 ASP A 454 161.04 -48.62 REMARK 500 5 PRO A 455 1.84 -69.73 REMARK 500 5 ASN A 516 -19.92 -47.61 REMARK 500 5 ALA A 521 85.41 -52.60 REMARK 500 5 GLU A 533 -72.15 -34.59 REMARK 500 5 LEU A 540 30.57 -93.48 REMARK 500 5 SER A 541 -64.45 -121.96 REMARK 500 5 SER A 543 -66.09 -103.70 REMARK 500 6 GLU A 443 173.32 -56.22 REMARK 500 6 ALA A 492 170.68 -56.82 REMARK 500 6 ALA A 521 94.20 -52.95 REMARK 500 6 SER A 538 38.62 -84.08 REMARK 500 6 PRO A 545 96.59 -69.79 REMARK 500 7 LYS A 437 -62.23 -129.37 REMARK 500 REMARK 500 THIS ENTRY HAS 180 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002009842.1 RELATED DB: TARGETDB DBREF 2DNY A 437 542 GB 14250810 AAH08875 437 542 SEQADV 2DNY GLY A 430 GB 14250810 CLONING ARTIFACT SEQADV 2DNY SER A 431 GB 14250810 CLONING ARTIFACT SEQADV 2DNY SER A 432 GB 14250810 CLONING ARTIFACT SEQADV 2DNY GLY A 433 GB 14250810 CLONING ARTIFACT SEQADV 2DNY SER A 434 GB 14250810 CLONING ARTIFACT SEQADV 2DNY SER A 435 GB 14250810 CLONING ARTIFACT SEQADV 2DNY GLY A 436 GB 14250810 CLONING ARTIFACT SEQADV 2DNY SER A 543 GB 14250810 CLONING ARTIFACT SEQADV 2DNY GLY A 544 GB 14250810 CLONING ARTIFACT SEQADV 2DNY PRO A 545 GB 14250810 CLONING ARTIFACT SEQADV 2DNY SER A 546 GB 14250810 CLONING ARTIFACT SEQADV 2DNY SER A 547 GB 14250810 CLONING ARTIFACT SEQADV 2DNY GLY A 548 GB 14250810 CLONING ARTIFACT SEQRES 1 A 119 GLY SER SER GLY SER SER GLY LYS LEU LEU ARG LYS GLN SEQRES 2 A 119 GLU SER THR VAL MET VAL LEU ARG ASN MET VAL ASP PRO SEQRES 3 A 119 LYS ASP ILE ASP ASP ASP LEU GLU GLY GLU VAL THR GLU SEQRES 4 A 119 GLU CYS GLY LYS PHE GLY ALA VAL ASN ARG VAL ILE ILE SEQRES 5 A 119 TYR GLN GLU LYS GLN GLY GLU GLU GLU ASP ALA GLU ILE SEQRES 6 A 119 ILE VAL LYS ILE PHE VAL GLU PHE SER ILE ALA SER GLU SEQRES 7 A 119 THR HIS LYS ALA ILE GLN ALA LEU ASN GLY ARG TRP PHE SEQRES 8 A 119 ALA GLY ARG LYS VAL VAL ALA GLU VAL TYR ASP GLN GLU SEQRES 9 A 119 ARG PHE ASP ASN SER ASP LEU SER ALA SER GLY PRO SER SEQRES 10 A 119 SER GLY HELIX 1 1 ASP A 461 CYS A 470 1 10 HELIX 2 2 ALA A 505 ALA A 514 1 10 SHEET 1 A 4 VAL A 476 LYS A 485 0 SHEET 2 A 4 ILE A 494 PHE A 502 -1 O PHE A 499 N ILE A 480 SHEET 3 A 4 VAL A 446 ARG A 450 -1 N MET A 447 O VAL A 500 SHEET 4 A 4 VAL A 526 VAL A 529 -1 O GLU A 528 N VAL A 448 SHEET 1 B 2 TRP A 519 PHE A 520 0 SHEET 2 B 2 ARG A 523 LYS A 524 -1 O ARG A 523 N PHE A 520 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1