data_2DRT # _entry.id 2DRT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DRT pdb_00002drt 10.2210/pdb2drt/pdb RCSB RCSB025766 ? ? WWPDB D_1000025766 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2DRX 'similar sequence with two LOG triplet' unspecified PDB 1V4F 'similar sequence with no LOG triplet' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DRT _pdbx_database_status.recvd_initial_deposition_date 2006-06-14 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Okuyama, K.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Unique side chain conformation of a leu residue in a triple-helical structure' _citation.journal_abbrev Biopolymers _citation.journal_volume 86 _citation.page_first 212 _citation.page_last 221 _citation.year 2007 _citation.journal_id_ASTM BIPMAA _citation.country US _citation.journal_id_ISSN 0006-3525 _citation.journal_id_CSD 0161 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17373653 _citation.pdbx_database_id_DOI 10.1002/bip.20724 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Okuyama, K.' 1 ? primary 'Narita, H.' 2 ? primary 'Kawaguchi, T.' 3 ? primary 'Noguchi, K.' 4 ? primary 'Tanaka, Y.' 5 ? primary 'Nishino, N.' 6 ? # _cell.entry_id 2DRT _cell.length_a 14.092 _cell.length_b 24.748 _cell.length_c 84.449 _cell.angle_alpha 90.00 _cell.angle_beta 91.00 _cell.angle_gamma 90.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2DRT _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'collagen like peptide' 2706.871 3 ? ? ? ? 2 non-polymer syn ETHANOL 46.068 3 ? ? ? ? 3 water nat water 18.015 161 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'P(HYP)GP(HYP)GP(HYP)GP(HYP)GL(HYP)GP(HYP)GP(HYP)GP(HYP)GP(HYP)GP(HYP)G' _entity_poly.pdbx_seq_one_letter_code_can PPGPPGPPGPPGLPGPPGPPGPPGPPGPPG _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 HYP n 1 3 GLY n 1 4 PRO n 1 5 HYP n 1 6 GLY n 1 7 PRO n 1 8 HYP n 1 9 GLY n 1 10 PRO n 1 11 HYP n 1 12 GLY n 1 13 LEU n 1 14 HYP n 1 15 GLY n 1 16 PRO n 1 17 HYP n 1 18 GLY n 1 19 PRO n 1 20 HYP n 1 21 GLY n 1 22 PRO n 1 23 HYP n 1 24 GLY n 1 25 PRO n 1 26 HYP n 1 27 GLY n 1 28 PRO n 1 29 HYP n 1 30 GLY n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Leu-Hyp-Gly guest triplet sandwiched by host Pro-Hyp-Gly sequence; This host triplet is very popular in the collagen sequence.' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2DRT _struct_ref.pdbx_db_accession 2DRT _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2DRT A 1 ? 30 ? 2DRT 1 ? 30 ? 1 30 2 1 2DRT B 1 ? 30 ? 2DRT 1 ? 30 ? 1 30 3 1 2DRT C 1 ? 30 ? 2DRT 1 ? 30 ? 1 30 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight EOH non-polymer . ETHANOL ? 'C2 H6 O' 46.068 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 HYP 'L-peptide linking' n 4-HYDROXYPROLINE HYDROXYPROLINE 'C5 H9 N O3' 131.130 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 # _exptl.entry_id 2DRT _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.81 _exptl_crystal.density_percent_sol 31.93 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_details '12.5% PEG 400, 0.05M acetate buffer, 5.0% Ethanol, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2003-01-25 _diffrn_detector.details mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'fixed-exit double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL40B2' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL40B2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 2DRT _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 1.0 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 1.6 _reflns.number_obs 7797 _reflns.number_all 8327 _reflns.percent_possible_obs 98.6 _reflns.pdbx_Rmerge_I_obs 0.085 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 5.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.66 _reflns_shell.percent_possible_all 99.6 _reflns_shell.Rmerge_I_obs 0.316 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 3.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 767 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2DRT _refine.ls_number_reflns_obs 7020 _refine.ls_number_reflns_all 6667 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.00 _refine.ls_d_res_high 1.60 _refine.ls_percent_reflns_obs 84.3 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.159 _refine.ls_R_factor_R_free 0.216 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 353 _refine.ls_number_parameters 2879 _refine.ls_number_restraints 2487 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 22.3 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1V4F' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2DRT _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 0 _refine_analyze.occupancy_sum_hydrogen 468.50 _refine_analyze.occupancy_sum_non_hydrogen 714.00 _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 549 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 170 _refine_hist.number_atoms_total 719 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 8.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.021 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.0286 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.038 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.039 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.074 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.060 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.000 ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.60 1.67 . 0.216 0.102 . . . . . . 685 . 'X-RAY DIFFRACTION' . 1.67 1.74 . 0.211 0.097 . . . . . . 648 . 'X-RAY DIFFRACTION' . 1.74 1.83 . 0.195 0.106 . . . . . . 704 . 'X-RAY DIFFRACTION' . 1.83 1.93 . 0.182 0.097 . . . . . . 646 . 'X-RAY DIFFRACTION' . 1.93 2.05 . 0.171 0.101 . . . . . . 674 . 'X-RAY DIFFRACTION' . 2.05 2.21 . 0.147 0.096 . . . . . . 641 . 'X-RAY DIFFRACTION' # _pdbx_refine.entry_id 2DRT _pdbx_refine.R_factor_all_no_cutoff 0.159 _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff 0.1493 _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff 5584 _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 2DRT _struct.title 'Structure Analysis of (POG)4-LOG-(POG)5' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DRT _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' _struct_keywords.text 'collagen, triple helix, Leu, STRUCTURAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A HYP 2 C ? ? ? 1_555 A GLY 3 N ? ? A HYP 2 A GLY 3 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale2 covale both ? A PRO 4 C ? ? ? 1_555 A HYP 5 N ? ? A PRO 4 A HYP 5 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale3 covale both ? A HYP 5 C ? ? ? 1_555 A GLY 6 N ? ? A HYP 5 A GLY 6 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale4 covale both ? A PRO 7 C ? ? ? 1_555 A HYP 8 N ? ? A PRO 7 A HYP 8 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale5 covale both ? A HYP 8 C ? ? ? 1_555 A GLY 9 N ? ? A HYP 8 A GLY 9 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale6 covale both ? A PRO 10 C ? ? ? 1_555 A HYP 11 N ? ? A PRO 10 A HYP 11 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale7 covale both ? A HYP 11 C ? ? ? 1_555 A GLY 12 N ? ? A HYP 11 A GLY 12 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale8 covale both ? A LEU 13 C ? ? ? 1_555 A HYP 14 N ? ? A LEU 13 A HYP 14 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale9 covale both ? A HYP 14 C ? ? ? 1_555 A GLY 15 N ? ? A HYP 14 A GLY 15 1_555 ? ? ? ? ? ? ? 1.313 ? ? covale10 covale both ? A PRO 16 C ? ? ? 1_555 A HYP 17 N ? ? A PRO 16 A HYP 17 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale11 covale both ? A HYP 17 C ? ? ? 1_555 A GLY 18 N ? ? A HYP 17 A GLY 18 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale12 covale both ? A PRO 19 C ? ? ? 1_555 A HYP 20 N ? ? A PRO 19 A HYP 20 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale13 covale both ? A HYP 20 C ? ? ? 1_555 A GLY 21 N ? ? A HYP 20 A GLY 21 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale14 covale both ? A PRO 22 C ? ? ? 1_555 A HYP 23 N ? ? A PRO 22 A HYP 23 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale15 covale both ? A HYP 23 C ? ? ? 1_555 A GLY 24 N ? ? A HYP 23 A GLY 24 1_555 ? ? ? ? ? ? ? 1.311 ? ? covale16 covale both ? A PRO 25 C ? ? ? 1_555 A HYP 26 N ? ? A PRO 25 A HYP 26 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale17 covale both ? A HYP 26 C ? ? ? 1_555 A GLY 27 N ? ? A HYP 26 A GLY 27 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale18 covale both ? A PRO 28 C ? ? ? 1_555 A HYP 29 N ? ? A PRO 28 A HYP 29 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale19 covale both ? A HYP 29 C ? ? ? 1_555 A GLY 30 N ? ? A HYP 29 A GLY 30 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale20 covale both ? B HYP 2 C ? ? ? 1_555 B GLY 3 N ? ? B HYP 2 B GLY 3 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale21 covale both ? B PRO 4 C ? ? ? 1_555 B HYP 5 N ? ? B PRO 4 B HYP 5 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale22 covale both ? B HYP 5 C ? ? ? 1_555 B GLY 6 N ? ? B HYP 5 B GLY 6 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale23 covale both ? B PRO 7 C ? ? ? 1_555 B HYP 8 N ? ? B PRO 7 B HYP 8 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale24 covale both ? B HYP 8 C ? ? ? 1_555 B GLY 9 N ? ? B HYP 8 B GLY 9 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale25 covale both ? B PRO 10 C ? ? ? 1_555 B HYP 11 N ? ? B PRO 10 B HYP 11 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale26 covale both ? B HYP 11 C ? ? ? 1_555 B GLY 12 N ? ? B HYP 11 B GLY 12 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale27 covale both ? B LEU 13 C ? ? ? 1_555 B HYP 14 N ? ? B LEU 13 B HYP 14 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale28 covale both ? B HYP 14 C ? ? ? 1_555 B GLY 15 N ? ? B HYP 14 B GLY 15 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale29 covale both ? B PRO 16 C ? ? ? 1_555 B HYP 17 N ? ? B PRO 16 B HYP 17 1_555 ? ? ? ? ? ? ? 1.313 ? ? covale30 covale both ? B HYP 17 C ? ? ? 1_555 B GLY 18 N ? ? B HYP 17 B GLY 18 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale31 covale both ? B PRO 19 C ? ? ? 1_555 B HYP 20 N ? ? B PRO 19 B HYP 20 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale32 covale both ? B HYP 20 C ? ? ? 1_555 B GLY 21 N ? ? B HYP 20 B GLY 21 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale33 covale both ? B PRO 22 C ? ? ? 1_555 B HYP 23 N ? ? B PRO 22 B HYP 23 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale34 covale both ? B HYP 23 C ? ? ? 1_555 B GLY 24 N ? ? B HYP 23 B GLY 24 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale35 covale both ? B PRO 25 C ? ? ? 1_555 B HYP 26 N ? ? B PRO 25 B HYP 26 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale36 covale both ? B HYP 26 C ? ? ? 1_555 B GLY 27 N ? ? B HYP 26 B GLY 27 1_555 ? ? ? ? ? ? ? 1.312 ? ? covale37 covale both ? B PRO 28 C ? ? ? 1_555 B HYP 29 N ? ? B PRO 28 B HYP 29 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale38 covale both ? B HYP 29 C ? ? ? 1_555 B GLY 30 N ? ? B HYP 29 B GLY 30 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale39 covale both ? C PRO 1 C ? ? ? 1_555 C HYP 2 N ? ? C PRO 1 C HYP 2 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale40 covale both ? C HYP 2 C ? ? ? 1_555 C GLY 3 N ? ? C HYP 2 C GLY 3 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale41 covale both ? C PRO 4 C ? ? ? 1_555 C HYP 5 N ? ? C PRO 4 C HYP 5 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale42 covale both ? C HYP 5 C ? ? ? 1_555 C GLY 6 N ? ? C HYP 5 C GLY 6 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale43 covale both ? C PRO 7 C ? ? ? 1_555 C HYP 8 N ? ? C PRO 7 C HYP 8 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale44 covale both ? C HYP 8 C ? ? ? 1_555 C GLY 9 N ? ? C HYP 8 C GLY 9 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale45 covale both ? C PRO 10 C ? ? ? 1_555 C HYP 11 N ? ? C PRO 10 C HYP 11 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale46 covale both ? C HYP 11 C ? ? ? 1_555 C GLY 12 N ? ? C HYP 11 C GLY 12 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale47 covale both ? C LEU 13 C ? ? ? 1_555 C HYP 14 N ? ? C LEU 13 C HYP 14 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale48 covale both ? C HYP 14 C ? ? ? 1_555 C GLY 15 N ? ? C HYP 14 C GLY 15 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale49 covale both ? C PRO 16 C ? ? ? 1_555 C HYP 17 N ? ? C PRO 16 C HYP 17 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale50 covale both ? C HYP 17 C ? ? ? 1_555 C GLY 18 N ? ? C HYP 17 C GLY 18 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale51 covale both ? C PRO 19 C ? ? ? 1_555 C HYP 20 N ? ? C PRO 19 C HYP 20 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale52 covale both ? C HYP 20 C ? ? ? 1_555 C GLY 21 N ? ? C HYP 20 C GLY 21 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale53 covale both ? C PRO 22 C ? ? ? 1_555 C HYP 23 N ? ? C PRO 22 C HYP 23 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale54 covale both ? C HYP 23 C ? ? ? 1_555 C GLY 24 N ? ? C HYP 23 C GLY 24 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale55 covale both ? C PRO 25 C ? ? ? 1_555 C HYP 26 N ? ? C PRO 25 C HYP 26 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale56 covale both ? C HYP 26 C ? ? ? 1_555 C GLY 27 N ? ? C HYP 26 C GLY 27 1_555 ? ? ? ? ? ? ? 1.336 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A EOH 101 ? 5 'BINDING SITE FOR RESIDUE EOH A 101' AC2 Software A EOH 102 ? 6 'BINDING SITE FOR RESIDUE EOH A 102' AC3 Software A EOH 103 ? 5 'BINDING SITE FOR RESIDUE EOH A 103' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 HYP A 26 ? HYP A 26 . ? 1_555 ? 2 AC1 5 GLY A 27 ? GLY A 27 . ? 1_555 ? 3 AC1 5 PRO A 28 ? PRO A 28 . ? 1_555 ? 4 AC1 5 HOH G . ? HOH A 1103 . ? 1_555 ? 5 AC1 5 HOH G . ? HOH A 2027 . ? 1_555 ? 6 AC2 6 LEU A 13 ? LEU A 13 . ? 1_555 ? 7 AC2 6 HYP A 14 ? HYP A 14 . ? 1_555 ? 8 AC2 6 GLY A 15 ? GLY A 15 . ? 1_555 ? 9 AC2 6 PRO A 16 ? PRO A 16 . ? 1_555 ? 10 AC2 6 HYP C 11 ? HYP C 11 . ? 1_555 ? 11 AC2 6 HOH I . ? HOH C 3001 . ? 1_555 ? 12 AC3 5 HYP A 23 ? HYP A 23 . ? 1_555 ? 13 AC3 5 HOH G . ? HOH A 1015 . ? 1_555 ? 14 AC3 5 HOH G . ? HOH A 1064 . ? 1_555 ? 15 AC3 5 HOH I . ? HOH C 1025 . ? 1_455 ? 16 AC3 5 HOH I . ? HOH C 2006 . ? 1_455 ? # _database_PDB_matrix.entry_id 2DRT _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 2DRT _atom_sites.fract_transf_matrix[1][1] 0.070962 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001239 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.040407 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011843 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 ? ? ? A . n A 1 2 HYP 2 2 2 HYP HYP A . n A 1 3 GLY 3 3 3 GLY GLY A . n A 1 4 PRO 4 4 4 PRO PRO A . n A 1 5 HYP 5 5 5 HYP HYP A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 HYP 8 8 8 HYP HYP A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 HYP 11 11 11 HYP HYP A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 HYP 14 14 14 HYP HYP A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 PRO 16 16 16 PRO PRO A . n A 1 17 HYP 17 17 17 HYP HYP A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 HYP 20 20 20 HYP HYP A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 HYP 23 23 23 HYP HYP A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 PRO 25 25 25 PRO PRO A . n A 1 26 HYP 26 26 26 HYP HYP A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 PRO 28 28 28 PRO PRO A . n A 1 29 HYP 29 29 29 HYP HYP A . n A 1 30 GLY 30 30 30 GLY GLY A . n B 1 1 PRO 1 1 ? ? ? B . n B 1 2 HYP 2 2 2 HYP HYP B . n B 1 3 GLY 3 3 3 GLY GLY B . n B 1 4 PRO 4 4 4 PRO PRO B . n B 1 5 HYP 5 5 5 HYP HYP B . n B 1 6 GLY 6 6 6 GLY GLY B . n B 1 7 PRO 7 7 7 PRO PRO B . n B 1 8 HYP 8 8 8 HYP HYP B . n B 1 9 GLY 9 9 9 GLY GLY B . n B 1 10 PRO 10 10 10 PRO PRO B . n B 1 11 HYP 11 11 11 HYP HYP B . n B 1 12 GLY 12 12 12 GLY GLY B . n B 1 13 LEU 13 13 13 LEU LEU B . n B 1 14 HYP 14 14 14 HYP HYP B . n B 1 15 GLY 15 15 15 GLY GLY B . n B 1 16 PRO 16 16 16 PRO PRO B . n B 1 17 HYP 17 17 17 HYP HYP B . n B 1 18 GLY 18 18 18 GLY GLY B . n B 1 19 PRO 19 19 19 PRO PRO B . n B 1 20 HYP 20 20 20 HYP HYP B . n B 1 21 GLY 21 21 21 GLY GLY B . n B 1 22 PRO 22 22 22 PRO PRO B . n B 1 23 HYP 23 23 23 HYP HYP B . n B 1 24 GLY 24 24 24 GLY GLY B . n B 1 25 PRO 25 25 25 PRO PRO B . n B 1 26 HYP 26 26 26 HYP HYP B . n B 1 27 GLY 27 27 27 GLY GLY B . n B 1 28 PRO 28 28 28 PRO PRO B . n B 1 29 HYP 29 29 29 HYP HYP B . n B 1 30 GLY 30 30 30 GLY GLY B . n C 1 1 PRO 1 1 1 PRO PRO C . n C 1 2 HYP 2 2 2 HYP HYP C . n C 1 3 GLY 3 3 3 GLY GLY C . n C 1 4 PRO 4 4 4 PRO PRO C . n C 1 5 HYP 5 5 5 HYP HYP C . n C 1 6 GLY 6 6 6 GLY GLY C . n C 1 7 PRO 7 7 7 PRO PRO C . n C 1 8 HYP 8 8 8 HYP HYP C . n C 1 9 GLY 9 9 9 GLY GLY C . n C 1 10 PRO 10 10 10 PRO PRO C . n C 1 11 HYP 11 11 11 HYP HYP C . n C 1 12 GLY 12 12 12 GLY GLY C . n C 1 13 LEU 13 13 13 LEU LEU C . n C 1 14 HYP 14 14 14 HYP HYP C . n C 1 15 GLY 15 15 15 GLY GLY C . n C 1 16 PRO 16 16 16 PRO PRO C . n C 1 17 HYP 17 17 17 HYP HYP C . n C 1 18 GLY 18 18 18 GLY GLY C . n C 1 19 PRO 19 19 19 PRO PRO C . n C 1 20 HYP 20 20 20 HYP HYP C . n C 1 21 GLY 21 21 21 GLY GLY C . n C 1 22 PRO 22 22 22 PRO PRO C . n C 1 23 HYP 23 23 23 HYP HYP C . n C 1 24 GLY 24 24 24 GLY GLY C . n C 1 25 PRO 25 25 25 PRO PRO C . n C 1 26 HYP 26 26 26 HYP HYP C . n C 1 27 GLY 27 27 27 GLY GLY C . n C 1 28 PRO 28 28 28 PRO PRO C . n C 1 29 HYP 29 29 ? ? ? C . n C 1 30 GLY 30 30 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 EOH 1 101 101 EOH ETA A . E 2 EOH 1 102 102 EOH ETA A . F 2 EOH 1 103 103 EOH ETA A . G 3 HOH 1 1004 1004 HOH HOH A . G 3 HOH 2 1005 1005 HOH HOH A . G 3 HOH 3 1013 1013 HOH HOH A . G 3 HOH 4 1014 1014 HOH HOH A . G 3 HOH 5 1015 1015 HOH HOH A . G 3 HOH 6 1023 1023 HOH HOH A . G 3 HOH 7 1036 1036 HOH HOH A . G 3 HOH 8 1039 1039 HOH HOH A . G 3 HOH 9 1040 1040 HOH HOH A . G 3 HOH 10 1043 1043 HOH HOH A . G 3 HOH 11 1045 1045 HOH HOH A . G 3 HOH 12 1047 1047 HOH HOH A . G 3 HOH 13 1048 1048 HOH HOH A . G 3 HOH 14 1051 1051 HOH HOH A . G 3 HOH 15 1054 1054 HOH HOH A . G 3 HOH 16 1058 1058 HOH HOH A . G 3 HOH 17 1060 1060 HOH HOH A . G 3 HOH 18 1064 1064 HOH HOH A . G 3 HOH 19 1065 1065 HOH HOH A . G 3 HOH 20 1072 1072 HOH HOH A . G 3 HOH 21 1073 1073 HOH HOH A . G 3 HOH 22 1074 1074 HOH HOH A . G 3 HOH 23 1075 1075 HOH HOH A . G 3 HOH 24 1077 1077 HOH HOH A . G 3 HOH 25 1080 1080 HOH HOH A . G 3 HOH 26 1082 1082 HOH HOH A . G 3 HOH 27 1083 1083 HOH HOH A . G 3 HOH 28 1090 1090 HOH HOH A . G 3 HOH 29 1091 1091 HOH HOH A . G 3 HOH 30 1092 1092 HOH HOH A . G 3 HOH 31 1093 1093 HOH HOH A . G 3 HOH 32 1099 1099 HOH HOH A . G 3 HOH 33 1103 1103 HOH HOH A . G 3 HOH 34 1105 1105 HOH HOH A . G 3 HOH 35 1107 1107 HOH HOH A . G 3 HOH 36 1108 1108 HOH HOH A . G 3 HOH 37 2002 2002 HOH HOH A . G 3 HOH 38 2003 2003 HOH HOH A . G 3 HOH 39 2014 2014 HOH HOH A . G 3 HOH 40 2017 2017 HOH HOH A . G 3 HOH 41 2020 2020 HOH HOH A . G 3 HOH 42 2021 2021 HOH HOH A . G 3 HOH 43 2022 2022 HOH HOH A . G 3 HOH 44 2025 2025 HOH HOH A . G 3 HOH 45 2026 2026 HOH HOH A . G 3 HOH 46 2027 2027 HOH HOH A . G 3 HOH 47 2028 2028 HOH HOH A . G 3 HOH 48 2030 2030 HOH HOH A . G 3 HOH 49 2036 2036 HOH HOH A . G 3 HOH 50 2037 2037 HOH HOH A . G 3 HOH 51 2039 2039 HOH HOH A . G 3 HOH 52 2041 2041 HOH HOH A . G 3 HOH 53 2046 2046 HOH HOH A . H 3 HOH 1 1002 1002 HOH HOH B . H 3 HOH 2 1006 1006 HOH HOH B . H 3 HOH 3 1008 1008 HOH HOH B . H 3 HOH 4 1009 1009 HOH HOH B . H 3 HOH 5 1012 1012 HOH HOH B . H 3 HOH 6 1017 1017 HOH HOH B . H 3 HOH 7 1018 1018 HOH HOH B . H 3 HOH 8 1019 1019 HOH HOH B . H 3 HOH 9 1022 1022 HOH HOH B . H 3 HOH 10 1026 1026 HOH HOH B . H 3 HOH 11 1027 1027 HOH HOH B . H 3 HOH 12 1029 1029 HOH HOH B . H 3 HOH 13 1030 1030 HOH HOH B . H 3 HOH 14 1031 1031 HOH HOH B . H 3 HOH 15 1032 1032 HOH HOH B . H 3 HOH 16 1033 1033 HOH HOH B . H 3 HOH 17 1034 1034 HOH HOH B . H 3 HOH 18 1037 1037 HOH HOH B . H 3 HOH 19 1038 1038 HOH HOH B . H 3 HOH 20 1042 1042 HOH HOH B . H 3 HOH 21 1044 1044 HOH HOH B . H 3 HOH 22 1046 1046 HOH HOH B . H 3 HOH 23 1053 1053 HOH HOH B . H 3 HOH 24 1056 1056 HOH HOH B . H 3 HOH 25 1057 1057 HOH HOH B . H 3 HOH 26 1061 1061 HOH HOH B . H 3 HOH 27 1062 1062 HOH HOH B . H 3 HOH 28 1070 1070 HOH HOH B . H 3 HOH 29 1071 1071 HOH HOH B . H 3 HOH 30 1078 1078 HOH HOH B . H 3 HOH 31 1079 1079 HOH HOH B . H 3 HOH 32 1084 1084 HOH HOH B . H 3 HOH 33 1085 1085 HOH HOH B . H 3 HOH 34 1094 1094 HOH HOH B . H 3 HOH 35 1100 1100 HOH HOH B . H 3 HOH 36 1101 1101 HOH HOH B . H 3 HOH 37 1102 1102 HOH HOH B . H 3 HOH 38 1104 1104 HOH HOH B . H 3 HOH 39 1110 1110 HOH HOH B . H 3 HOH 40 1111 1111 HOH HOH B . H 3 HOH 41 2004 2004 HOH HOH B . H 3 HOH 42 2005 2005 HOH HOH B . H 3 HOH 43 2007 2007 HOH HOH B . H 3 HOH 44 2008 2008 HOH HOH B . H 3 HOH 45 2009 2009 HOH HOH B . H 3 HOH 46 2010 2010 HOH HOH B . H 3 HOH 47 2012 2012 HOH HOH B . H 3 HOH 48 2029 2029 HOH HOH B . H 3 HOH 49 2033 2033 HOH HOH B . H 3 HOH 50 2034 2034 HOH HOH B . H 3 HOH 51 2038 2038 HOH HOH B . H 3 HOH 52 2040 2040 HOH HOH B . H 3 HOH 53 2042 2042 HOH HOH B . H 3 HOH 54 2043 2043 HOH HOH B . H 3 HOH 55 2047 2047 HOH HOH B . H 3 HOH 56 3002 3002 HOH HOH B . I 3 HOH 1 1001 1001 HOH HOH C . I 3 HOH 2 1003 1003 HOH HOH C . I 3 HOH 3 1007 1007 HOH HOH C . I 3 HOH 4 1010 1010 HOH HOH C . I 3 HOH 5 1011 1011 HOH HOH C . I 3 HOH 6 1016 1016 HOH HOH C . I 3 HOH 7 1020 1020 HOH HOH C . I 3 HOH 8 1021 1021 HOH HOH C . I 3 HOH 9 1024 1024 HOH HOH C . I 3 HOH 10 1025 1025 HOH HOH C . I 3 HOH 11 1028 1028 HOH HOH C . I 3 HOH 12 1035 1035 HOH HOH C . I 3 HOH 13 1041 1041 HOH HOH C . I 3 HOH 14 1049 1049 HOH HOH C . I 3 HOH 15 1050 1050 HOH HOH C . I 3 HOH 16 1052 1052 HOH HOH C . I 3 HOH 17 1055 1055 HOH HOH C . I 3 HOH 18 1059 1059 HOH HOH C . I 3 HOH 19 1063 1063 HOH HOH C . I 3 HOH 20 1066 1066 HOH HOH C . I 3 HOH 21 1067 1067 HOH HOH C . I 3 HOH 22 1068 1068 HOH HOH C . I 3 HOH 23 1069 1069 HOH HOH C . I 3 HOH 24 1076 1076 HOH HOH C . I 3 HOH 25 1081 1081 HOH HOH C . I 3 HOH 26 1086 1086 HOH HOH C . I 3 HOH 27 1087 1087 HOH HOH C . I 3 HOH 28 1088 1088 HOH HOH C . I 3 HOH 29 1089 1089 HOH HOH C . I 3 HOH 30 1095 1095 HOH HOH C . I 3 HOH 31 1096 1096 HOH HOH C . I 3 HOH 32 1097 1097 HOH HOH C . I 3 HOH 33 1098 1098 HOH HOH C . I 3 HOH 34 1106 1106 HOH HOH C . I 3 HOH 35 1109 1109 HOH HOH C . I 3 HOH 36 2001 2001 HOH HOH C . I 3 HOH 37 2006 2006 HOH HOH C . I 3 HOH 38 2011 2011 HOH HOH C . I 3 HOH 39 2013 2013 HOH HOH C . I 3 HOH 40 2015 2015 HOH HOH C . I 3 HOH 41 2016 2016 HOH HOH C . I 3 HOH 42 2018 2018 HOH HOH C . I 3 HOH 43 2019 2019 HOH HOH C . I 3 HOH 44 2023 2023 HOH HOH C . I 3 HOH 45 2024 2024 HOH HOH C . I 3 HOH 46 2031 2031 HOH HOH C . I 3 HOH 47 2032 2032 HOH HOH C . I 3 HOH 48 2035 2035 HOH HOH C . I 3 HOH 49 2044 2044 HOH HOH C . I 3 HOH 50 2045 2045 HOH HOH C . I 3 HOH 51 2048 2048 HOH HOH C . I 3 HOH 52 3001 3001 HOH HOH C . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A HYP 2 A HYP 2 ? PRO 4-HYDROXYPROLINE 2 A HYP 5 A HYP 5 ? PRO 4-HYDROXYPROLINE 3 A HYP 8 A HYP 8 ? PRO 4-HYDROXYPROLINE 4 A HYP 11 A HYP 11 ? PRO 4-HYDROXYPROLINE 5 A HYP 14 A HYP 14 ? PRO 4-HYDROXYPROLINE 6 A HYP 17 A HYP 17 ? PRO 4-HYDROXYPROLINE 7 A HYP 20 A HYP 20 ? PRO 4-HYDROXYPROLINE 8 A HYP 23 A HYP 23 ? PRO 4-HYDROXYPROLINE 9 A HYP 26 A HYP 26 ? PRO 4-HYDROXYPROLINE 10 A HYP 29 A HYP 29 ? PRO 4-HYDROXYPROLINE 11 B HYP 2 B HYP 2 ? PRO 4-HYDROXYPROLINE 12 B HYP 5 B HYP 5 ? PRO 4-HYDROXYPROLINE 13 B HYP 8 B HYP 8 ? PRO 4-HYDROXYPROLINE 14 B HYP 11 B HYP 11 ? PRO 4-HYDROXYPROLINE 15 B HYP 14 B HYP 14 ? PRO 4-HYDROXYPROLINE 16 B HYP 17 B HYP 17 ? PRO 4-HYDROXYPROLINE 17 B HYP 20 B HYP 20 ? PRO 4-HYDROXYPROLINE 18 B HYP 23 B HYP 23 ? PRO 4-HYDROXYPROLINE 19 B HYP 26 B HYP 26 ? PRO 4-HYDROXYPROLINE 20 B HYP 29 B HYP 29 ? PRO 4-HYDROXYPROLINE 21 C HYP 2 C HYP 2 ? PRO 4-HYDROXYPROLINE 22 C HYP 5 C HYP 5 ? PRO 4-HYDROXYPROLINE 23 C HYP 8 C HYP 8 ? PRO 4-HYDROXYPROLINE 24 C HYP 11 C HYP 11 ? PRO 4-HYDROXYPROLINE 25 C HYP 14 C HYP 14 ? PRO 4-HYDROXYPROLINE 26 C HYP 17 C HYP 17 ? PRO 4-HYDROXYPROLINE 27 C HYP 20 C HYP 20 ? PRO 4-HYDROXYPROLINE 28 C HYP 23 C HYP 23 ? PRO 4-HYDROXYPROLINE 29 C HYP 26 C HYP 26 ? PRO 4-HYDROXYPROLINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5320 ? 1 MORE -23 ? 1 'SSA (A^2)' 4990 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-04-24 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELX 'model building' . ? 1 SHELXL-97 refinement . ? 2 ADSC 'data collection' . ? 3 HKL-2000 'data scaling' . ? 4 X-PLOR phasing . ? 5 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A PRO 1 ? A PRO 1 2 1 Y 1 B PRO 1 ? B PRO 1 3 1 Y 1 C HYP 29 ? C HYP 29 4 1 Y 1 C GLY 30 ? C GLY 30 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal EOH C1 C N N 1 EOH C2 C N N 2 EOH O O N N 3 EOH H11 H N N 4 EOH H12 H N N 5 EOH H21 H N N 6 EOH H22 H N N 7 EOH H23 H N N 8 EOH HO H N N 9 GLY N N N N 10 GLY CA C N N 11 GLY C C N N 12 GLY O O N N 13 GLY OXT O N N 14 GLY H H N N 15 GLY H2 H N N 16 GLY HA2 H N N 17 GLY HA3 H N N 18 GLY HXT H N N 19 HOH O O N N 20 HOH H1 H N N 21 HOH H2 H N N 22 HYP N N N N 23 HYP CA C N S 24 HYP C C N N 25 HYP O O N N 26 HYP CB C N N 27 HYP CG C N R 28 HYP CD C N N 29 HYP OD1 O N N 30 HYP OXT O N N 31 HYP H H N N 32 HYP HA H N N 33 HYP HB2 H N N 34 HYP HB3 H N N 35 HYP HG H N N 36 HYP HD22 H N N 37 HYP HD23 H N N 38 HYP HD1 H N N 39 HYP HXT H N N 40 LEU N N N N 41 LEU CA C N S 42 LEU C C N N 43 LEU O O N N 44 LEU CB C N N 45 LEU CG C N N 46 LEU CD1 C N N 47 LEU CD2 C N N 48 LEU OXT O N N 49 LEU H H N N 50 LEU H2 H N N 51 LEU HA H N N 52 LEU HB2 H N N 53 LEU HB3 H N N 54 LEU HG H N N 55 LEU HD11 H N N 56 LEU HD12 H N N 57 LEU HD13 H N N 58 LEU HD21 H N N 59 LEU HD22 H N N 60 LEU HD23 H N N 61 LEU HXT H N N 62 PRO N N N N 63 PRO CA C N S 64 PRO C C N N 65 PRO O O N N 66 PRO CB C N N 67 PRO CG C N N 68 PRO CD C N N 69 PRO OXT O N N 70 PRO H H N N 71 PRO HA H N N 72 PRO HB2 H N N 73 PRO HB3 H N N 74 PRO HG2 H N N 75 PRO HG3 H N N 76 PRO HD2 H N N 77 PRO HD3 H N N 78 PRO HXT H N N 79 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal EOH C1 C2 sing N N 1 EOH C1 O sing N N 2 EOH C1 H11 sing N N 3 EOH C1 H12 sing N N 4 EOH C2 H21 sing N N 5 EOH C2 H22 sing N N 6 EOH C2 H23 sing N N 7 EOH O HO sing N N 8 GLY N CA sing N N 9 GLY N H sing N N 10 GLY N H2 sing N N 11 GLY CA C sing N N 12 GLY CA HA2 sing N N 13 GLY CA HA3 sing N N 14 GLY C O doub N N 15 GLY C OXT sing N N 16 GLY OXT HXT sing N N 17 HOH O H1 sing N N 18 HOH O H2 sing N N 19 HYP N CA sing N N 20 HYP N CD sing N N 21 HYP N H sing N N 22 HYP CA C sing N N 23 HYP CA CB sing N N 24 HYP CA HA sing N N 25 HYP C O doub N N 26 HYP C OXT sing N N 27 HYP CB CG sing N N 28 HYP CB HB2 sing N N 29 HYP CB HB3 sing N N 30 HYP CG CD sing N N 31 HYP CG OD1 sing N N 32 HYP CG HG sing N N 33 HYP CD HD22 sing N N 34 HYP CD HD23 sing N N 35 HYP OD1 HD1 sing N N 36 HYP OXT HXT sing N N 37 LEU N CA sing N N 38 LEU N H sing N N 39 LEU N H2 sing N N 40 LEU CA C sing N N 41 LEU CA CB sing N N 42 LEU CA HA sing N N 43 LEU C O doub N N 44 LEU C OXT sing N N 45 LEU CB CG sing N N 46 LEU CB HB2 sing N N 47 LEU CB HB3 sing N N 48 LEU CG CD1 sing N N 49 LEU CG CD2 sing N N 50 LEU CG HG sing N N 51 LEU CD1 HD11 sing N N 52 LEU CD1 HD12 sing N N 53 LEU CD1 HD13 sing N N 54 LEU CD2 HD21 sing N N 55 LEU CD2 HD22 sing N N 56 LEU CD2 HD23 sing N N 57 LEU OXT HXT sing N N 58 PRO N CA sing N N 59 PRO N CD sing N N 60 PRO N H sing N N 61 PRO CA C sing N N 62 PRO CA CB sing N N 63 PRO CA HA sing N N 64 PRO C O doub N N 65 PRO C OXT sing N N 66 PRO CB CG sing N N 67 PRO CB HB2 sing N N 68 PRO CB HB3 sing N N 69 PRO CG CD sing N N 70 PRO CG HG2 sing N N 71 PRO CG HG3 sing N N 72 PRO CD HD2 sing N N 73 PRO CD HD3 sing N N 74 PRO OXT HXT sing N N 75 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ETHANOL EOH 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1V4F _pdbx_initial_refinement_model.details 'PDB ENTRY 1V4F' #