data_2DT7 # _entry.id 2DT7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DT7 pdb_00002dt7 10.2210/pdb2dt7/pdb RCSB RCSB025816 ? ? WWPDB D_1000025816 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2DT6 . unspecified TargetDB hss001001930.1 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DT7 _pdbx_database_status.recvd_initial_deposition_date 2006-07-11 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'He, F.' 1 'Kuwasako, K.' 2 'Inoue, M.' 3 'Guntert, P.' 4 'Muto, Y.' 5 'Yokoyama, S.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title 'Solution structures of the SURP domains and the subunit-assembly mechanism within the splicing factor SF3a complex in 17S U2 snRNP' _citation.journal_abbrev Structure _citation.journal_volume 14 _citation.page_first 1677 _citation.page_last 1689 _citation.year 2006 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17098193 _citation.pdbx_database_id_DOI 10.1016/j.str.2006.09.009 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kuwasako, K.' 1 ? primary 'He, F.' 2 ? primary 'Inoue, M.' 3 ? primary 'Tanaka, A.' 4 ? primary 'Sugano, S.' 5 ? primary 'Guentert, P.' 6 ? primary 'Muto, Y.' 7 ? primary 'Yokoyama, S.' 8 ? # _cell.entry_id 2DT7 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DT7 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Splicing factor 3A subunit 3' 4452.058 1 ? ? 'residues 70-107' ? 2 polymer man 'Splicing factor 3 subunit 1' 9990.318 1 ? ? 'SURP domain' ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Spliceosome-associated protein 61, SAP 61, SF3a60' 2 'Spliceosome-associated protein 114, SAP 114, SF3a120' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GELNAISGPNEFAEFYNRLKQIKEFHRKHPNEICVPMS GELNAISGPNEFAEFYNRLKQIKEFHRKHPNEICVPMS A hss001001930.1 2 'polypeptide(L)' no no ;GAQVIQETIVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLV EQYTK ; ;GAQVIQETIVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLV EQYTK ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLU n 1 3 LEU n 1 4 ASN n 1 5 ALA n 1 6 ILE n 1 7 SER n 1 8 GLY n 1 9 PRO n 1 10 ASN n 1 11 GLU n 1 12 PHE n 1 13 ALA n 1 14 GLU n 1 15 PHE n 1 16 TYR n 1 17 ASN n 1 18 ARG n 1 19 LEU n 1 20 LYS n 1 21 GLN n 1 22 ILE n 1 23 LYS n 1 24 GLU n 1 25 PHE n 1 26 HIS n 1 27 ARG n 1 28 LYS n 1 29 HIS n 1 30 PRO n 1 31 ASN n 1 32 GLU n 1 33 ILE n 1 34 CYS n 1 35 VAL n 1 36 PRO n 1 37 MET n 1 38 SER n 2 1 GLY n 2 2 ALA n 2 3 GLN n 2 4 VAL n 2 5 ILE n 2 6 GLN n 2 7 GLU n 2 8 THR n 2 9 ILE n 2 10 VAL n 2 11 PRO n 2 12 LYS n 2 13 GLU n 2 14 PRO n 2 15 PRO n 2 16 PRO n 2 17 GLU n 2 18 PHE n 2 19 GLU n 2 20 PHE n 2 21 ILE n 2 22 ALA n 2 23 ASP n 2 24 PRO n 2 25 PRO n 2 26 SER n 2 27 ILE n 2 28 SER n 2 29 ALA n 2 30 PHE n 2 31 ASP n 2 32 LEU n 2 33 ASP n 2 34 VAL n 2 35 VAL n 2 36 LYS n 2 37 LEU n 2 38 THR n 2 39 ALA n 2 40 GLN n 2 41 PHE n 2 42 VAL n 2 43 ALA n 2 44 ARG n 2 45 ASN n 2 46 GLY n 2 47 ARG n 2 48 GLN n 2 49 PHE n 2 50 LEU n 2 51 THR n 2 52 GLN n 2 53 LEU n 2 54 MET n 2 55 GLN n 2 56 LYS n 2 57 GLU n 2 58 GLN n 2 59 ARG n 2 60 ASN n 2 61 TYR n 2 62 GLN n 2 63 PHE n 2 64 ASP n 2 65 PHE n 2 66 LEU n 2 67 ARG n 2 68 PRO n 2 69 GLN n 2 70 HIS n 2 71 SER n 2 72 LEU n 2 73 PHE n 2 74 ASN n 2 75 TYR n 2 76 PHE n 2 77 THR n 2 78 LYS n 2 79 LEU n 2 80 VAL n 2 81 GLU n 2 82 GLN n 2 83 TYR n 2 84 THR n 2 85 LYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? human Homo 'SF3a60, SF3a3' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? ? ? ? ? ? ? ? ? PLASMID ? ? ? 'PGEX6P-1-SF3A60 (71-107)-HIS(6)-SF3A120 SURP2 (134-217)' ? ? 2 1 sample ? ? ? human Homo SF3a120/SF3a1 ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? ? ? ? ? ? ? ? ? PLASMID ? ? ? 'PGEX6P-1-SF3A60 (71-107)-HIS(6)-SF3A120 SURP2 (134-217)' ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP SF3A3_HUMAN Q12874 1 ELNAISGPNEFAEFYNRLKQIKEFHRKHPNEICVPMS 71 ? 2 UNP SF3A1_HUMAN Q15459 2 ;AQVIQETIVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVE QYTK ; 134 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2DT7 A 2 ? 38 ? Q12874 71 ? 107 ? 71 107 2 2 2DT7 B 2 ? 85 ? Q15459 134 ? 217 ? 134 217 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DT7 GLY A 1 ? UNP Q12874 ? ? 'cloning artifact' 70 1 2 2DT7 GLY B 1 ? UNP Q15459 ? ? 'cloning artifact' 133 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 308 _pdbx_nmr_exptl_sample_conditions.pressure AMBIENT _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 20mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '2.0mM U-15N, 13C PROTEIN; 20mM sodium phosphate; 1mM d-DTT; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 AVANCE Bruker 700 ? 2 AVANCE Bruker 800 ? # _pdbx_nmr_refine.entry_id 2DT7 _pdbx_nmr_refine.method 'TORSION ANGLE DYNAMICS, RESTRAINTED ENERGY MINIMIZATION' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DT7 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DT7 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 2.6 Bruker 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9321 'Kobayashi, N.' 4 'structure solution' CYANA 2.1 'Guntert, P.' 5 'structure solution' OPALp 1.4 'Koradi, R.' 6 refinement CYANA 2.1 'Guntert, P.' 7 refinement OPALp 1.4 'Koradi, R.' 8 # _exptl.entry_id 2DT7 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DT7 _struct.title ;Solution structure of the second SURP domain of human splicing factor SF3a120 in complex with a fragment of human splicing factor SF3a60 ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DT7 _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text ;structure genomics, SF3a120, SF3a60, SURP domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, RNA BINDING PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 10 ? LYS A 28 ? ASN A 79 LYS A 97 1 ? 19 HELX_P HELX_P2 2 SER B 28 ? GLY B 46 ? SER B 160 GLY B 178 1 ? 19 HELX_P HELX_P3 3 GLY B 46 ? GLU B 57 ? GLY B 178 GLU B 189 1 ? 12 HELX_P HELX_P4 4 ASN B 60 ? ARG B 67 ? ASN B 192 ARG B 199 5 ? 8 HELX_P HELX_P5 5 SER B 71 ? THR B 84 ? SER B 203 THR B 216 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 2DT7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DT7 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 70 70 GLY GLY A . n A 1 2 GLU 2 71 71 GLU GLU A . n A 1 3 LEU 3 72 72 LEU LEU A . n A 1 4 ASN 4 73 73 ASN ASN A . n A 1 5 ALA 5 74 74 ALA ALA A . n A 1 6 ILE 6 75 75 ILE ILE A . n A 1 7 SER 7 76 76 SER SER A . n A 1 8 GLY 8 77 77 GLY GLY A . n A 1 9 PRO 9 78 78 PRO PRO A . n A 1 10 ASN 10 79 79 ASN ASN A . n A 1 11 GLU 11 80 80 GLU GLU A . n A 1 12 PHE 12 81 81 PHE PHE A . n A 1 13 ALA 13 82 82 ALA ALA A . n A 1 14 GLU 14 83 83 GLU GLU A . n A 1 15 PHE 15 84 84 PHE PHE A . n A 1 16 TYR 16 85 85 TYR TYR A . n A 1 17 ASN 17 86 86 ASN ASN A . n A 1 18 ARG 18 87 87 ARG ARG A . n A 1 19 LEU 19 88 88 LEU LEU A . n A 1 20 LYS 20 89 89 LYS LYS A . n A 1 21 GLN 21 90 90 GLN GLN A . n A 1 22 ILE 22 91 91 ILE ILE A . n A 1 23 LYS 23 92 92 LYS LYS A . n A 1 24 GLU 24 93 93 GLU GLU A . n A 1 25 PHE 25 94 94 PHE PHE A . n A 1 26 HIS 26 95 95 HIS HIS A . n A 1 27 ARG 27 96 96 ARG ARG A . n A 1 28 LYS 28 97 97 LYS LYS A . n A 1 29 HIS 29 98 98 HIS HIS A . n A 1 30 PRO 30 99 99 PRO PRO A . n A 1 31 ASN 31 100 100 ASN ASN A . n A 1 32 GLU 32 101 101 GLU GLU A . n A 1 33 ILE 33 102 102 ILE ILE A . n A 1 34 CYS 34 103 103 CYS CYS A . n A 1 35 VAL 35 104 104 VAL VAL A . n A 1 36 PRO 36 105 105 PRO PRO A . n A 1 37 MET 37 106 106 MET MET A . n A 1 38 SER 38 107 107 SER SER A . n B 2 1 GLY 1 133 133 GLY GLY B . n B 2 2 ALA 2 134 134 ALA ALA B . n B 2 3 GLN 3 135 135 GLN GLN B . n B 2 4 VAL 4 136 136 VAL VAL B . n B 2 5 ILE 5 137 137 ILE ILE B . n B 2 6 GLN 6 138 138 GLN GLN B . n B 2 7 GLU 7 139 139 GLU GLU B . n B 2 8 THR 8 140 140 THR THR B . n B 2 9 ILE 9 141 141 ILE ILE B . n B 2 10 VAL 10 142 142 VAL VAL B . n B 2 11 PRO 11 143 143 PRO PRO B . n B 2 12 LYS 12 144 144 LYS LYS B . n B 2 13 GLU 13 145 145 GLU GLU B . n B 2 14 PRO 14 146 146 PRO PRO B . n B 2 15 PRO 15 147 147 PRO PRO B . n B 2 16 PRO 16 148 148 PRO PRO B . n B 2 17 GLU 17 149 149 GLU GLU B . n B 2 18 PHE 18 150 150 PHE PHE B . n B 2 19 GLU 19 151 151 GLU GLU B . n B 2 20 PHE 20 152 152 PHE PHE B . n B 2 21 ILE 21 153 153 ILE ILE B . n B 2 22 ALA 22 154 154 ALA ALA B . n B 2 23 ASP 23 155 155 ASP ASP B . n B 2 24 PRO 24 156 156 PRO PRO B . n B 2 25 PRO 25 157 157 PRO PRO B . n B 2 26 SER 26 158 158 SER SER B . n B 2 27 ILE 27 159 159 ILE ILE B . n B 2 28 SER 28 160 160 SER SER B . n B 2 29 ALA 29 161 161 ALA ALA B . n B 2 30 PHE 30 162 162 PHE PHE B . n B 2 31 ASP 31 163 163 ASP ASP B . n B 2 32 LEU 32 164 164 LEU LEU B . n B 2 33 ASP 33 165 165 ASP ASP B . n B 2 34 VAL 34 166 166 VAL VAL B . n B 2 35 VAL 35 167 167 VAL VAL B . n B 2 36 LYS 36 168 168 LYS LYS B . n B 2 37 LEU 37 169 169 LEU LEU B . n B 2 38 THR 38 170 170 THR THR B . n B 2 39 ALA 39 171 171 ALA ALA B . n B 2 40 GLN 40 172 172 GLN GLN B . n B 2 41 PHE 41 173 173 PHE PHE B . n B 2 42 VAL 42 174 174 VAL VAL B . n B 2 43 ALA 43 175 175 ALA ALA B . n B 2 44 ARG 44 176 176 ARG ARG B . n B 2 45 ASN 45 177 177 ASN ASN B . n B 2 46 GLY 46 178 178 GLY GLY B . n B 2 47 ARG 47 179 179 ARG ARG B . n B 2 48 GLN 48 180 180 GLN GLN B . n B 2 49 PHE 49 181 181 PHE PHE B . n B 2 50 LEU 50 182 182 LEU LEU B . n B 2 51 THR 51 183 183 THR THR B . n B 2 52 GLN 52 184 184 GLN GLN B . n B 2 53 LEU 53 185 185 LEU LEU B . n B 2 54 MET 54 186 186 MET MET B . n B 2 55 GLN 55 187 187 GLN GLN B . n B 2 56 LYS 56 188 188 LYS LYS B . n B 2 57 GLU 57 189 189 GLU GLU B . n B 2 58 GLN 58 190 190 GLN GLN B . n B 2 59 ARG 59 191 191 ARG ARG B . n B 2 60 ASN 60 192 192 ASN ASN B . n B 2 61 TYR 61 193 193 TYR TYR B . n B 2 62 GLN 62 194 194 GLN GLN B . n B 2 63 PHE 63 195 195 PHE PHE B . n B 2 64 ASP 64 196 196 ASP ASP B . n B 2 65 PHE 65 197 197 PHE PHE B . n B 2 66 LEU 66 198 198 LEU LEU B . n B 2 67 ARG 67 199 199 ARG ARG B . n B 2 68 PRO 68 200 200 PRO PRO B . n B 2 69 GLN 69 201 201 GLN GLN B . n B 2 70 HIS 70 202 202 HIS HIS B . n B 2 71 SER 71 203 203 SER SER B . n B 2 72 LEU 72 204 204 LEU LEU B . n B 2 73 PHE 73 205 205 PHE PHE B . n B 2 74 ASN 74 206 206 ASN ASN B . n B 2 75 TYR 75 207 207 TYR TYR B . n B 2 76 PHE 76 208 208 PHE PHE B . n B 2 77 THR 77 209 209 THR THR B . n B 2 78 LYS 78 210 210 LYS LYS B . n B 2 79 LEU 79 211 211 LEU LEU B . n B 2 80 VAL 80 212 212 VAL VAL B . n B 2 81 GLU 81 213 213 GLU GLU B . n B 2 82 GLN 82 214 214 GLN GLN B . n B 2 83 TYR 83 215 215 TYR TYR B . n B 2 84 THR 84 216 216 THR THR B . n B 2 85 LYS 85 217 217 LYS LYS B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-12-26 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 10 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 87 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 87 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 87 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 117.14 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation -3.16 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 71 ? ? 60.45 -163.82 2 1 PRO A 78 ? ? -65.79 99.99 3 1 ALA B 134 ? ? -68.63 1.21 4 1 ASP B 155 ? ? 66.10 68.82 5 1 SER B 158 ? ? 67.26 158.08 6 2 ASN A 73 ? ? 65.68 174.38 7 2 CYS A 103 ? ? 58.26 -171.96 8 2 ALA B 134 ? ? 58.73 -13.37 9 2 GLN B 135 ? ? -69.77 26.92 10 2 ILE B 141 ? ? 71.82 168.29 11 2 LYS B 144 ? ? -143.50 31.45 12 2 GLU B 149 ? ? -143.64 29.90 13 2 ASP B 155 ? ? 41.27 70.71 14 2 SER B 158 ? ? 63.44 176.48 15 2 GLN B 190 ? ? -57.55 -8.57 16 2 GLN B 201 ? ? -67.13 3.11 17 3 LEU A 72 ? ? -164.78 -52.47 18 3 ASN A 79 ? ? 58.83 104.59 19 3 ALA B 134 ? ? 63.17 170.13 20 3 GLN B 135 ? ? -152.80 84.79 21 3 LYS B 144 ? ? -80.77 34.40 22 3 ASP B 155 ? ? 51.09 71.47 23 3 GLN B 201 ? ? -67.66 4.00 24 4 PRO A 78 ? ? -69.79 99.30 25 4 GLN B 135 ? ? 74.57 159.65 26 4 ALA B 154 ? ? -150.82 78.67 27 4 ASP B 155 ? ? 52.59 78.80 28 4 SER B 158 ? ? 66.09 162.58 29 4 GLN B 201 ? ? -64.24 1.77 30 5 GLU A 71 ? ? 50.56 79.60 31 5 ASN A 73 ? ? 56.71 -170.45 32 5 SER A 76 ? ? 73.36 -178.70 33 5 GLU A 101 ? ? 28.86 64.82 34 5 CYS A 103 ? ? 61.37 95.22 35 5 PRO B 143 ? ? -69.52 -179.92 36 5 LYS B 144 ? ? 76.89 -174.56 37 5 ASP B 155 ? ? 39.64 71.09 38 6 GLU A 71 ? ? 68.63 162.86 39 6 LEU A 72 ? ? 59.70 13.82 40 6 ASN A 100 ? ? 51.91 -168.32 41 6 GLU A 101 ? ? 55.02 -173.42 42 6 GLN B 135 ? ? -65.38 93.39 43 6 ASP B 155 ? ? 35.24 61.78 44 6 SER B 158 ? ? 73.71 -178.15 45 7 ALA A 74 ? ? 57.22 -173.32 46 7 SER A 76 ? ? 38.80 81.70 47 7 ASN A 100 ? ? 51.19 -147.96 48 7 ILE A 102 ? ? 51.93 88.00 49 7 CYS A 103 ? ? 66.16 -170.75 50 7 VAL B 136 ? ? -150.58 -18.61 51 7 GLU B 151 ? ? 75.76 -148.11 52 7 ASP B 155 ? ? 38.31 78.74 53 8 GLU A 71 ? ? 69.68 -167.94 54 8 LEU A 72 ? ? -142.94 -54.96 55 8 ALA A 74 ? ? -141.71 34.09 56 8 SER A 76 ? ? -162.46 52.76 57 8 ASN A 100 ? ? 57.21 5.58 58 8 ALA B 134 ? ? -143.80 27.76 59 8 GLN B 138 ? ? 56.89 -171.80 60 8 GLU B 149 ? ? -91.29 55.05 61 8 PHE B 152 ? ? 56.17 -178.88 62 8 ASP B 155 ? ? 35.25 74.99 63 9 ALA A 74 ? ? 59.21 5.81 64 9 GLU A 101 ? ? 60.41 -177.35 65 9 ILE A 102 ? ? -75.77 -93.53 66 9 CYS A 103 ? ? -143.25 -18.33 67 9 ALA B 134 ? ? 55.31 -73.37 68 9 VAL B 136 ? ? 16.34 81.17 69 9 GLN B 138 ? ? 67.05 147.28 70 9 ILE B 141 ? ? 70.63 -178.97 71 9 LYS B 144 ? ? 54.64 80.70 72 9 ASP B 155 ? ? 34.73 60.45 73 10 LEU A 72 ? ? -142.54 59.90 74 10 CYS A 103 ? ? 60.57 -175.13 75 10 ALA B 134 ? ? 61.30 179.21 76 10 SER B 158 ? ? 63.43 -173.66 77 10 GLN B 190 ? ? -49.85 -10.81 78 11 GLU A 101 ? ? 47.70 -149.49 79 11 CYS A 103 ? ? 30.52 59.23 80 11 GLN B 138 ? ? -151.32 -33.84 81 11 PHE B 150 ? ? -47.89 150.38 82 11 ASP B 155 ? ? 54.62 71.58 83 12 GLU A 71 ? ? 61.96 167.11 84 12 CYS A 103 ? ? 47.50 71.66 85 12 MET A 106 ? ? 53.96 14.39 86 12 ALA B 134 ? ? 48.73 -127.35 87 12 ASP B 155 ? ? 62.36 81.98 88 12 THR B 216 ? ? -67.13 -178.60 89 13 GLN B 135 ? ? -145.22 -3.53 90 13 THR B 140 ? ? -146.63 20.24 91 13 GLU B 151 ? ? 61.32 -163.33 92 14 GLU A 71 ? ? 8.28 72.20 93 14 ASN A 73 ? ? -132.75 -61.36 94 14 ALA A 74 ? ? 52.21 -161.60 95 14 GLU B 139 ? ? -141.09 -12.24 96 14 GLU B 151 ? ? 50.38 -155.40 97 14 GLN B 190 ? ? -59.69 2.01 98 15 GLU A 71 ? ? 56.58 71.03 99 15 MET A 106 ? ? 65.06 -6.75 100 15 VAL B 136 ? ? 66.23 171.94 101 15 GLN B 138 ? ? -140.17 56.61 102 15 GLU B 151 ? ? -127.28 -163.94 103 15 ASP B 155 ? ? 29.52 72.62 104 16 ASN A 79 ? ? 84.50 -179.46 105 16 GLU A 101 ? ? -154.39 22.39 106 16 PRO B 157 ? ? -75.39 -167.79 107 16 GLN B 187 ? ? -94.18 -60.68 108 17 LEU A 72 ? ? -162.07 -66.57 109 17 ALA A 74 ? ? -83.59 -151.25 110 17 ILE A 102 ? ? 57.69 78.57 111 17 CYS A 103 ? ? 72.20 -71.29 112 17 GLN B 138 ? ? -145.42 36.42 113 17 SER B 158 ? ? 53.66 -146.93 114 18 SER A 76 ? ? -82.37 -152.99 115 18 ARG A 96 ? ? -68.81 1.55 116 18 ALA B 134 ? ? 57.50 -165.67 117 18 ILE B 137 ? ? -178.93 131.74 118 18 GLU B 139 ? ? 59.44 -21.10 119 18 ASP B 155 ? ? 50.70 71.54 120 19 ASN A 73 ? ? 57.74 -164.26 121 19 ASN A 79 ? ? 84.58 117.11 122 19 ILE A 102 ? ? -136.50 -72.80 123 19 ALA B 134 ? ? 43.24 -141.20 124 19 GLN B 138 ? ? 58.94 88.10 125 19 LYS B 144 ? ? 60.02 177.01 126 19 SER B 158 ? ? 66.16 -172.34 127 19 GLN B 190 ? ? -53.78 -8.54 128 20 ALA A 74 ? ? 49.42 -141.92 129 20 SER A 76 ? ? -165.75 94.73 130 20 GLN B 135 ? ? -156.88 -45.85 131 20 PRO B 143 ? ? -73.61 -159.78 132 20 ASP B 155 ? ? 37.45 75.04 133 20 SER B 158 ? ? 56.98 -156.30 134 20 GLN B 190 ? ? -48.91 -17.18 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 2 ARG B 176 ? ? 0.099 'SIDE CHAIN' 2 2 ARG B 191 ? ? 0.100 'SIDE CHAIN' 3 2 ARG B 199 ? ? 0.084 'SIDE CHAIN' 4 3 ARG A 87 ? ? 0.076 'SIDE CHAIN' 5 3 ARG A 96 ? ? 0.088 'SIDE CHAIN' 6 6 ARG B 191 ? ? 0.097 'SIDE CHAIN' 7 7 TYR B 193 ? ? 0.065 'SIDE CHAIN' 8 11 ARG B 176 ? ? 0.099 'SIDE CHAIN' 9 13 ARG B 199 ? ? 0.087 'SIDE CHAIN' 10 15 ARG B 179 ? ? 0.080 'SIDE CHAIN' 11 15 TYR B 215 ? ? 0.068 'SIDE CHAIN' 12 16 ARG A 96 ? ? 0.084 'SIDE CHAIN' #