data_2DY9 # _entry.id 2DY9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DY9 pdb_00002dy9 10.2210/pdb2dy9/pdb RCSB RCSB025992 ? ? WWPDB D_1000025992 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2DYA 'The same protein complex with two ADP molecules' unspecified TargetDB pho001000698.3 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DY9 _pdbx_database_status.recvd_initial_deposition_date 2006-09-08 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kato-Murayama, M.' 1 'Murayama, K.' 2 'Terada, T.' 3 'Shirouzu, M.' 4 'Yokoyama, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title 'Crystal structure of nucleoside diphosphate kinase in complex with ADP' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kato-Murayama, M.' 1 ? primary 'Murayama, K.' 2 ? primary 'Terada, T.' 3 ? primary 'Shirouzu, M.' 4 ? primary 'Yokoyama, S.' 5 ? # _cell.entry_id 2DY9 _cell.length_a 69.835 _cell.length_b 69.835 _cell.length_c 106.897 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2DY9 _symmetry.space_group_name_H-M 'P 63' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Nucleoside diphosphate kinase' 18342.336 2 2.7.4.6 ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 4 ? ? ? ? 4 non-polymer syn "ADENOSINE-5'-DIPHOSPHATE" 427.201 1 ? ? ? ? 5 water nat water 18.015 221 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'NDK, NDP kinase, Nucleoside-2-P kinase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MFQMSETERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMV LEGRYAVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHASDSKESAEREISLFFKPEELFEYPRAADWFYKKGI ; _entity_poly.pdbx_seq_one_letter_code_can ;MFQMSETERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMV LEGRYAVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHASDSKESAEREISLFFKPEELFEYPRAADWFYKKGI ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier pho001000698.3 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 PHE n 1 3 GLN n 1 4 MET n 1 5 SER n 1 6 GLU n 1 7 THR n 1 8 GLU n 1 9 ARG n 1 10 THR n 1 11 LEU n 1 12 VAL n 1 13 ILE n 1 14 ILE n 1 15 LYS n 1 16 PRO n 1 17 ASP n 1 18 ALA n 1 19 VAL n 1 20 VAL n 1 21 ARG n 1 22 GLY n 1 23 LEU n 1 24 ILE n 1 25 GLY n 1 26 GLU n 1 27 ILE n 1 28 ILE n 1 29 SER n 1 30 ARG n 1 31 PHE n 1 32 GLU n 1 33 LYS n 1 34 LYS n 1 35 GLY n 1 36 LEU n 1 37 LYS n 1 38 ILE n 1 39 VAL n 1 40 GLY n 1 41 MET n 1 42 LYS n 1 43 MET n 1 44 ILE n 1 45 TRP n 1 46 ILE n 1 47 ASP n 1 48 ARG n 1 49 GLU n 1 50 LEU n 1 51 ALA n 1 52 GLU n 1 53 LYS n 1 54 HIS n 1 55 TYR n 1 56 GLU n 1 57 GLU n 1 58 HIS n 1 59 ARG n 1 60 GLU n 1 61 LYS n 1 62 PRO n 1 63 PHE n 1 64 PHE n 1 65 LYS n 1 66 ALA n 1 67 LEU n 1 68 ILE n 1 69 ASP n 1 70 TYR n 1 71 ILE n 1 72 THR n 1 73 LYS n 1 74 THR n 1 75 PRO n 1 76 VAL n 1 77 VAL n 1 78 VAL n 1 79 MET n 1 80 VAL n 1 81 LEU n 1 82 GLU n 1 83 GLY n 1 84 ARG n 1 85 TYR n 1 86 ALA n 1 87 VAL n 1 88 GLU n 1 89 VAL n 1 90 VAL n 1 91 ARG n 1 92 LYS n 1 93 MET n 1 94 ALA n 1 95 GLY n 1 96 ALA n 1 97 THR n 1 98 ASP n 1 99 PRO n 1 100 LYS n 1 101 ASP n 1 102 ALA n 1 103 ALA n 1 104 PRO n 1 105 GLY n 1 106 THR n 1 107 ILE n 1 108 ARG n 1 109 GLY n 1 110 ASP n 1 111 PHE n 1 112 GLY n 1 113 LEU n 1 114 GLU n 1 115 VAL n 1 116 SER n 1 117 ASP n 1 118 ALA n 1 119 ILE n 1 120 CYS n 1 121 ASN n 1 122 VAL n 1 123 ILE n 1 124 HIS n 1 125 ALA n 1 126 SER n 1 127 ASP n 1 128 SER n 1 129 LYS n 1 130 GLU n 1 131 SER n 1 132 ALA n 1 133 GLU n 1 134 ARG n 1 135 GLU n 1 136 ILE n 1 137 SER n 1 138 LEU n 1 139 PHE n 1 140 PHE n 1 141 LYS n 1 142 PRO n 1 143 GLU n 1 144 GLU n 1 145 LEU n 1 146 PHE n 1 147 GLU n 1 148 TYR n 1 149 PRO n 1 150 ARG n 1 151 ALA n 1 152 ALA n 1 153 ASP n 1 154 TRP n 1 155 PHE n 1 156 TYR n 1 157 LYS n 1 158 LYS n 1 159 GLY n 1 160 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Pyrococcus _entity_src_gen.pdbx_gene_src_gene ndk _entity_src_gen.gene_src_species 'Pyrococcus horikoshii' _entity_src_gen.gene_src_strain OT3 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pyrococcus horikoshii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 70601 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NDK_PYRHO _struct_ref.pdbx_db_accession O58429 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSETERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMVLEG RYAVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHASDSKESAEREISLFFKPEELFEYPRAADWFYKKGI ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2DY9 A 4 ? 160 ? O58429 1 ? 157 ? 4 160 2 1 2DY9 B 4 ? 160 ? O58429 1 ? 157 ? 4 160 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DY9 MET A 1 ? UNP O58429 ? ? 'SEE REMARK 999' 1 1 1 2DY9 PHE A 2 ? UNP O58429 ? ? 'SEE REMARK 999' 2 2 1 2DY9 GLN A 3 ? UNP O58429 ? ? 'SEE REMARK 999' 3 3 2 2DY9 MET B 1 ? UNP O58429 ? ? 'SEE REMARK 999' 1 4 2 2DY9 PHE B 2 ? UNP O58429 ? ? 'SEE REMARK 999' 2 5 2 2DY9 GLN B 3 ? UNP O58429 ? ? 'SEE REMARK 999' 3 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ADP non-polymer n "ADENOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O10 P2' 427.201 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2DY9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.05 _exptl_crystal.density_percent_sol 40.01 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'Na Citrate, Bicine, 1mM ADP, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2005-12-26 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'conforcal mirror' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 2DY9 _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 34.92 _reflns.d_resolution_high 2.01 _reflns.number_obs 19689 _reflns.number_all ? _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.078 _reflns.pdbx_netI_over_sigmaI 32.1 _reflns.B_iso_Wilson_estimate 13.2 _reflns.pdbx_redundancy 11.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.01 _reflns_shell.d_res_low 2.08 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.298 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2DY9 _refine.ls_number_reflns_obs 19663 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1475359.53 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.92 _refine.ls_d_res_high 2.01 _refine.ls_percent_reflns_obs 99.8 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.122 _refine.ls_R_factor_R_free 0.168 _refine.ls_R_factor_R_free_error 0.010 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_number_reflns_R_free 918 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 18.7 _refine.aniso_B[1][1] 0.289 _refine.aniso_B[2][2] 0.289 _refine.aniso_B[3][3] -0.577 _refine.aniso_B[1][2] -0.391 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.390506 _refine.solvent_model_param_bsol 49.0422 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'This is a twinned structure. The twinning operator is (h,k,l) -> (h,-h-k,-l) and the twinning fraction is 0.404.' _refine.pdbx_starting_model 'PDB ENTRY 2CWK' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2DY9 _refine_analyze.Luzzati_coordinate_error_obs 0.28 _refine_analyze.Luzzati_sigma_a_obs 0.20 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.33 _refine_analyze.Luzzati_sigma_a_free 0.11 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2493 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 32 _refine_hist.number_atoms_solvent 221 _refine_hist.number_atoms_total 2746 _refine_hist.d_res_high 2.01 _refine_hist.d_res_low 34.92 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 21.7 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.80 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.17 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 1.87 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.86 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.72 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 2.01 _refine_ls_shell.d_res_low 2.10 _refine_ls_shell.number_reflns_R_work 2342 _refine_ls_shell.R_factor_R_work 0.164 _refine_ls_shell.percent_reflns_obs 99.8 _refine_ls_shell.R_factor_R_free 0.215 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 4.3 _refine_ls_shell.number_reflns_R_free 106 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 adp.param adp.top 'X-RAY DIFFRACTION' 3 water_rep.param water_rep.top 'X-RAY DIFFRACTION' 4 ion.param ion.top 'X-RAY DIFFRACTION' # _struct.entry_id 2DY9 _struct.title 'Crystal structure of nucleoside diphosphate kinase in complex with ADP' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DY9 _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;nucleoside binding, kinase, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, TRANSFERASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 3 ? H N N 3 ? I N N 5 ? J N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 15 ? GLY A 22 ? LYS A 15 GLY A 22 1 ? 8 HELX_P HELX_P2 2 LEU A 23 ? GLY A 35 ? LEU A 23 GLY A 35 1 ? 13 HELX_P HELX_P3 3 ASP A 47 ? TYR A 55 ? ASP A 47 TYR A 55 1 ? 9 HELX_P HELX_P4 4 GLU A 56 ? ARG A 59 ? GLU A 56 ARG A 59 5 ? 4 HELX_P HELX_P5 5 PHE A 63 ? THR A 72 ? PHE A 63 THR A 72 1 ? 10 HELX_P HELX_P6 6 TYR A 85 ? GLY A 95 ? TYR A 85 GLY A 95 1 ? 11 HELX_P HELX_P7 7 THR A 106 ? GLY A 112 ? THR A 106 GLY A 112 1 ? 7 HELX_P HELX_P8 8 SER A 128 ? PHE A 140 ? SER A 128 PHE A 140 1 ? 13 HELX_P HELX_P9 9 LYS A 141 ? LEU A 145 ? LYS A 141 LEU A 145 5 ? 5 HELX_P HELX_P10 10 ALA A 152 ? LYS A 157 ? ALA A 152 LYS A 157 1 ? 6 HELX_P HELX_P11 11 LYS B 15 ? ARG B 21 ? LYS B 15 ARG B 21 1 ? 7 HELX_P HELX_P12 12 LEU B 23 ? GLY B 35 ? LEU B 23 GLY B 35 1 ? 13 HELX_P HELX_P13 13 ASP B 47 ? TYR B 55 ? ASP B 47 TYR B 55 1 ? 9 HELX_P HELX_P14 14 GLU B 56 ? ARG B 59 ? GLU B 56 ARG B 59 5 ? 4 HELX_P HELX_P15 15 PHE B 63 ? THR B 72 ? PHE B 63 THR B 72 1 ? 10 HELX_P HELX_P16 16 TYR B 85 ? GLY B 95 ? TYR B 85 GLY B 95 1 ? 11 HELX_P HELX_P17 17 THR B 106 ? GLY B 112 ? THR B 106 GLY B 112 1 ? 7 HELX_P HELX_P18 18 SER B 128 ? PHE B 140 ? SER B 128 PHE B 140 1 ? 13 HELX_P HELX_P19 19 LYS B 141 ? LEU B 145 ? LYS B 141 LEU B 145 5 ? 5 HELX_P HELX_P20 20 ARG B 150 ? LYS B 157 ? ARG B 150 LYS B 157 5 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? F ADP . O1A ? ? ? 1_555 C MG . MG ? ? A ADP 501 A MG 601 1_555 ? ? ? ? ? ? ? 2.290 ? ? metalc2 metalc ? ? F ADP . O1B ? ? ? 1_555 C MG . MG ? ? A ADP 501 A MG 601 1_555 ? ? ? ? ? ? ? 2.478 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 601 A HOH 732 1_555 ? ? ? ? ? ? ? 2.610 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 601 A HOH 735 1_555 ? ? ? ? ? ? ? 2.262 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 601 A HOH 774 1_555 ? ? ? ? ? ? ? 2.386 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 37 ? ILE A 44 ? LYS A 37 ILE A 44 A 2 VAL A 76 ? ARG A 84 ? VAL A 76 ARG A 84 A 3 THR A 7 ? ILE A 14 ? THR A 7 ILE A 14 A 4 ILE A 123 ? ALA A 125 ? ILE A 123 ALA A 125 B 1 LYS B 37 ? ILE B 44 ? LYS B 37 ILE B 44 B 2 VAL B 76 ? ARG B 84 ? VAL B 76 ARG B 84 B 3 THR B 7 ? ILE B 14 ? THR B 7 ILE B 14 B 4 ILE B 123 ? ALA B 125 ? ILE B 123 ALA B 125 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 37 ? N LYS A 37 O GLU A 82 ? O GLU A 82 A 2 3 O MET A 79 ? O MET A 79 N VAL A 12 ? N VAL A 12 A 3 4 N ILE A 13 ? N ILE A 13 O HIS A 124 ? O HIS A 124 B 1 2 N LYS B 37 ? N LYS B 37 O GLU B 82 ? O GLU B 82 B 2 3 O VAL B 77 ? O VAL B 77 N ILE B 14 ? N ILE B 14 B 3 4 N ILE B 13 ? N ILE B 13 O HIS B 124 ? O HIS B 124 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 601 ? 4 'BINDING SITE FOR RESIDUE MG A 601' AC2 Software A CL 701 ? 3 'BINDING SITE FOR RESIDUE CL A 701' AC3 Software A CL 702 ? 3 'BINDING SITE FOR RESIDUE CL A 702' AC4 Software B CL 703 ? 3 'BINDING SITE FOR RESIDUE CL B 703' AC5 Software B CL 704 ? 3 'BINDING SITE FOR RESIDUE CL B 704' AC6 Software A ADP 501 ? 14 'BINDING SITE FOR RESIDUE ADP A 501' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ADP F . ? ADP A 501 . ? 1_555 ? 2 AC1 4 HOH I . ? HOH A 732 . ? 1_555 ? 3 AC1 4 HOH I . ? HOH A 735 . ? 1_555 ? 4 AC1 4 HOH I . ? HOH A 774 . ? 1_555 ? 5 AC2 3 ALA A 96 ? ALA A 96 . ? 1_555 ? 6 AC2 3 ALA A 102 ? ALA A 102 . ? 1_555 ? 7 AC2 3 ALA A 103 ? ALA A 103 . ? 1_555 ? 8 AC3 3 ARG A 150 ? ARG A 150 . ? 1_555 ? 9 AC3 3 ALA A 151 ? ALA A 151 . ? 1_555 ? 10 AC3 3 ALA A 152 ? ALA A 152 . ? 1_555 ? 11 AC4 3 GLY B 95 ? GLY B 95 . ? 1_555 ? 12 AC4 3 ALA B 96 ? ALA B 96 . ? 1_555 ? 13 AC4 3 ALA B 103 ? ALA B 103 . ? 1_555 ? 14 AC5 3 ARG B 150 ? ARG B 150 . ? 1_555 ? 15 AC5 3 ALA B 151 ? ALA B 151 . ? 1_555 ? 16 AC5 3 ALA B 152 ? ALA B 152 . ? 1_555 ? 17 AC6 14 LYS A 15 ? LYS A 15 . ? 1_555 ? 18 AC6 14 HIS A 58 ? HIS A 58 . ? 1_555 ? 19 AC6 14 PHE A 63 ? PHE A 63 . ? 1_555 ? 20 AC6 14 LEU A 67 ? LEU A 67 . ? 1_555 ? 21 AC6 14 ARG A 91 ? ARG A 91 . ? 1_555 ? 22 AC6 14 THR A 97 ? THR A 97 . ? 1_555 ? 23 AC6 14 ARG A 108 ? ARG A 108 . ? 1_555 ? 24 AC6 14 ILE A 119 ? ILE A 119 . ? 1_555 ? 25 AC6 14 ASN A 121 ? ASN A 121 . ? 1_555 ? 26 AC6 14 MG C . ? MG A 601 . ? 1_555 ? 27 AC6 14 HOH I . ? HOH A 714 . ? 1_555 ? 28 AC6 14 HOH I . ? HOH A 730 . ? 1_555 ? 29 AC6 14 HOH I . ? HOH A 754 . ? 1_555 ? 30 AC6 14 HOH I . ? HOH A 764 . ? 1_555 ? # _database_PDB_matrix.entry_id 2DY9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DY9 _atom_sites.fract_transf_matrix[1][1] 0.014319 _atom_sites.fract_transf_matrix[1][2] 0.008267 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016535 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009355 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 PHE 2 2 ? ? ? A . n A 1 3 GLN 3 3 ? ? ? A . n A 1 4 MET 4 4 ? ? ? A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 THR 10 10 10 THR THR A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 ILE 14 14 14 ILE ILE A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 PRO 16 16 16 PRO PRO A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 ILE 27 27 27 ILE ILE A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 ARG 30 30 30 ARG ARG A . n A 1 31 PHE 31 31 31 PHE PHE A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 MET 41 41 41 MET MET A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 MET 43 43 43 MET MET A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 TRP 45 45 45 TRP TRP A . n A 1 46 ILE 46 46 46 ILE ILE A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 LYS 53 53 53 LYS LYS A . n A 1 54 HIS 54 54 54 HIS HIS A . n A 1 55 TYR 55 55 55 TYR TYR A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 HIS 58 58 58 HIS HIS A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 PRO 62 62 62 PRO PRO A . n A 1 63 PHE 63 63 63 PHE PHE A . n A 1 64 PHE 64 64 64 PHE PHE A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 ASP 69 69 69 ASP ASP A . n A 1 70 TYR 70 70 70 TYR TYR A . n A 1 71 ILE 71 71 71 ILE ILE A . n A 1 72 THR 72 72 72 THR THR A . n A 1 73 LYS 73 73 73 LYS LYS A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 PRO 75 75 75 PRO PRO A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 MET 79 79 79 MET MET A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 GLY 83 83 83 GLY GLY A . n A 1 84 ARG 84 84 84 ARG ARG A . n A 1 85 TYR 85 85 85 TYR TYR A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 GLU 88 88 88 GLU GLU A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 VAL 90 90 90 VAL VAL A . n A 1 91 ARG 91 91 91 ARG ARG A . n A 1 92 LYS 92 92 92 LYS LYS A . n A 1 93 MET 93 93 93 MET MET A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 ASP 98 98 98 ASP ASP A . n A 1 99 PRO 99 99 99 PRO PRO A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 PRO 104 104 104 PRO PRO A . n A 1 105 GLY 105 105 105 GLY GLY A . n A 1 106 THR 106 106 106 THR THR A . n A 1 107 ILE 107 107 107 ILE ILE A . n A 1 108 ARG 108 108 108 ARG ARG A . n A 1 109 GLY 109 109 109 GLY GLY A . n A 1 110 ASP 110 110 110 ASP ASP A . n A 1 111 PHE 111 111 111 PHE PHE A . n A 1 112 GLY 112 112 112 GLY GLY A . n A 1 113 LEU 113 113 113 LEU LEU A . n A 1 114 GLU 114 114 114 GLU GLU A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 SER 116 116 116 SER SER A . n A 1 117 ASP 117 117 117 ASP ASP A . n A 1 118 ALA 118 118 118 ALA ALA A . n A 1 119 ILE 119 119 119 ILE ILE A . n A 1 120 CYS 120 120 120 CYS CYS A . n A 1 121 ASN 121 121 121 ASN ASN A . n A 1 122 VAL 122 122 122 VAL VAL A . n A 1 123 ILE 123 123 123 ILE ILE A . n A 1 124 HIS 124 124 124 HIS HIS A . n A 1 125 ALA 125 125 125 ALA ALA A . n A 1 126 SER 126 126 126 SER SER A . n A 1 127 ASP 127 127 127 ASP ASP A . n A 1 128 SER 128 128 128 SER SER A . n A 1 129 LYS 129 129 129 LYS LYS A . n A 1 130 GLU 130 130 130 GLU GLU A . n A 1 131 SER 131 131 131 SER SER A . n A 1 132 ALA 132 132 132 ALA ALA A . n A 1 133 GLU 133 133 133 GLU GLU A . n A 1 134 ARG 134 134 134 ARG ARG A . n A 1 135 GLU 135 135 135 GLU GLU A . n A 1 136 ILE 136 136 136 ILE ILE A . n A 1 137 SER 137 137 137 SER SER A . n A 1 138 LEU 138 138 138 LEU LEU A . n A 1 139 PHE 139 139 139 PHE PHE A . n A 1 140 PHE 140 140 140 PHE PHE A . n A 1 141 LYS 141 141 141 LYS LYS A . n A 1 142 PRO 142 142 142 PRO PRO A . n A 1 143 GLU 143 143 143 GLU GLU A . n A 1 144 GLU 144 144 144 GLU GLU A . n A 1 145 LEU 145 145 145 LEU LEU A . n A 1 146 PHE 146 146 146 PHE PHE A . n A 1 147 GLU 147 147 147 GLU GLU A . n A 1 148 TYR 148 148 148 TYR TYR A . n A 1 149 PRO 149 149 149 PRO PRO A . n A 1 150 ARG 150 150 150 ARG ARG A . n A 1 151 ALA 151 151 151 ALA ALA A . n A 1 152 ALA 152 152 152 ALA ALA A . n A 1 153 ASP 153 153 153 ASP ASP A . n A 1 154 TRP 154 154 154 TRP TRP A . n A 1 155 PHE 155 155 155 PHE PHE A . n A 1 156 TYR 156 156 156 TYR TYR A . n A 1 157 LYS 157 157 157 LYS LYS A . n A 1 158 LYS 158 158 158 LYS LYS A . n A 1 159 GLY 159 159 ? ? ? A . n A 1 160 ILE 160 160 ? ? ? A . n B 1 1 MET 1 1 ? ? ? B . n B 1 2 PHE 2 2 ? ? ? B . n B 1 3 GLN 3 3 ? ? ? B . n B 1 4 MET 4 4 ? ? ? B . n B 1 5 SER 5 5 5 SER SER B . n B 1 6 GLU 6 6 6 GLU GLU B . n B 1 7 THR 7 7 7 THR THR B . n B 1 8 GLU 8 8 8 GLU GLU B . n B 1 9 ARG 9 9 9 ARG ARG B . n B 1 10 THR 10 10 10 THR THR B . n B 1 11 LEU 11 11 11 LEU LEU B . n B 1 12 VAL 12 12 12 VAL VAL B . n B 1 13 ILE 13 13 13 ILE ILE B . n B 1 14 ILE 14 14 14 ILE ILE B . n B 1 15 LYS 15 15 15 LYS LYS B . n B 1 16 PRO 16 16 16 PRO PRO B . n B 1 17 ASP 17 17 17 ASP ASP B . n B 1 18 ALA 18 18 18 ALA ALA B . n B 1 19 VAL 19 19 19 VAL VAL B . n B 1 20 VAL 20 20 20 VAL VAL B . n B 1 21 ARG 21 21 21 ARG ARG B . n B 1 22 GLY 22 22 22 GLY GLY B . n B 1 23 LEU 23 23 23 LEU LEU B . n B 1 24 ILE 24 24 24 ILE ILE B . n B 1 25 GLY 25 25 25 GLY GLY B . n B 1 26 GLU 26 26 26 GLU GLU B . n B 1 27 ILE 27 27 27 ILE ILE B . n B 1 28 ILE 28 28 28 ILE ILE B . n B 1 29 SER 29 29 29 SER SER B . n B 1 30 ARG 30 30 30 ARG ARG B . n B 1 31 PHE 31 31 31 PHE PHE B . n B 1 32 GLU 32 32 32 GLU GLU B . n B 1 33 LYS 33 33 33 LYS LYS B . n B 1 34 LYS 34 34 34 LYS LYS B . n B 1 35 GLY 35 35 35 GLY GLY B . n B 1 36 LEU 36 36 36 LEU LEU B . n B 1 37 LYS 37 37 37 LYS LYS B . n B 1 38 ILE 38 38 38 ILE ILE B . n B 1 39 VAL 39 39 39 VAL VAL B . n B 1 40 GLY 40 40 40 GLY GLY B . n B 1 41 MET 41 41 41 MET MET B . n B 1 42 LYS 42 42 42 LYS LYS B . n B 1 43 MET 43 43 43 MET MET B . n B 1 44 ILE 44 44 44 ILE ILE B . n B 1 45 TRP 45 45 45 TRP TRP B . n B 1 46 ILE 46 46 46 ILE ILE B . n B 1 47 ASP 47 47 47 ASP ASP B . n B 1 48 ARG 48 48 48 ARG ARG B . n B 1 49 GLU 49 49 49 GLU GLU B . n B 1 50 LEU 50 50 50 LEU LEU B . n B 1 51 ALA 51 51 51 ALA ALA B . n B 1 52 GLU 52 52 52 GLU GLU B . n B 1 53 LYS 53 53 53 LYS LYS B . n B 1 54 HIS 54 54 54 HIS HIS B . n B 1 55 TYR 55 55 55 TYR TYR B . n B 1 56 GLU 56 56 56 GLU GLU B . n B 1 57 GLU 57 57 57 GLU GLU B . n B 1 58 HIS 58 58 58 HIS HIS B . n B 1 59 ARG 59 59 59 ARG ARG B . n B 1 60 GLU 60 60 60 GLU GLU B . n B 1 61 LYS 61 61 61 LYS LYS B . n B 1 62 PRO 62 62 62 PRO PRO B . n B 1 63 PHE 63 63 63 PHE PHE B . n B 1 64 PHE 64 64 64 PHE PHE B . n B 1 65 LYS 65 65 65 LYS LYS B . n B 1 66 ALA 66 66 66 ALA ALA B . n B 1 67 LEU 67 67 67 LEU LEU B . n B 1 68 ILE 68 68 68 ILE ILE B . n B 1 69 ASP 69 69 69 ASP ASP B . n B 1 70 TYR 70 70 70 TYR TYR B . n B 1 71 ILE 71 71 71 ILE ILE B . n B 1 72 THR 72 72 72 THR THR B . n B 1 73 LYS 73 73 73 LYS LYS B . n B 1 74 THR 74 74 74 THR THR B . n B 1 75 PRO 75 75 75 PRO PRO B . n B 1 76 VAL 76 76 76 VAL VAL B . n B 1 77 VAL 77 77 77 VAL VAL B . n B 1 78 VAL 78 78 78 VAL VAL B . n B 1 79 MET 79 79 79 MET MET B . n B 1 80 VAL 80 80 80 VAL VAL B . n B 1 81 LEU 81 81 81 LEU LEU B . n B 1 82 GLU 82 82 82 GLU GLU B . n B 1 83 GLY 83 83 83 GLY GLY B . n B 1 84 ARG 84 84 84 ARG ARG B . n B 1 85 TYR 85 85 85 TYR TYR B . n B 1 86 ALA 86 86 86 ALA ALA B . n B 1 87 VAL 87 87 87 VAL VAL B . n B 1 88 GLU 88 88 88 GLU GLU B . n B 1 89 VAL 89 89 89 VAL VAL B . n B 1 90 VAL 90 90 90 VAL VAL B . n B 1 91 ARG 91 91 91 ARG ARG B . n B 1 92 LYS 92 92 92 LYS LYS B . n B 1 93 MET 93 93 93 MET MET B . n B 1 94 ALA 94 94 94 ALA ALA B . n B 1 95 GLY 95 95 95 GLY GLY B . n B 1 96 ALA 96 96 96 ALA ALA B . n B 1 97 THR 97 97 97 THR THR B . n B 1 98 ASP 98 98 98 ASP ASP B . n B 1 99 PRO 99 99 99 PRO PRO B . n B 1 100 LYS 100 100 100 LYS LYS B . n B 1 101 ASP 101 101 101 ASP ASP B . n B 1 102 ALA 102 102 102 ALA ALA B . n B 1 103 ALA 103 103 103 ALA ALA B . n B 1 104 PRO 104 104 104 PRO PRO B . n B 1 105 GLY 105 105 105 GLY GLY B . n B 1 106 THR 106 106 106 THR THR B . n B 1 107 ILE 107 107 107 ILE ILE B . n B 1 108 ARG 108 108 108 ARG ARG B . n B 1 109 GLY 109 109 109 GLY GLY B . n B 1 110 ASP 110 110 110 ASP ASP B . n B 1 111 PHE 111 111 111 PHE PHE B . n B 1 112 GLY 112 112 112 GLY GLY B . n B 1 113 LEU 113 113 113 LEU LEU B . n B 1 114 GLU 114 114 114 GLU GLU B . n B 1 115 VAL 115 115 115 VAL VAL B . n B 1 116 SER 116 116 116 SER SER B . n B 1 117 ASP 117 117 117 ASP ASP B . n B 1 118 ALA 118 118 118 ALA ALA B . n B 1 119 ILE 119 119 119 ILE ILE B . n B 1 120 CYS 120 120 120 CYS CYS B . n B 1 121 ASN 121 121 121 ASN ASN B . n B 1 122 VAL 122 122 122 VAL VAL B . n B 1 123 ILE 123 123 123 ILE ILE B . n B 1 124 HIS 124 124 124 HIS HIS B . n B 1 125 ALA 125 125 125 ALA ALA B . n B 1 126 SER 126 126 126 SER SER B . n B 1 127 ASP 127 127 127 ASP ASP B . n B 1 128 SER 128 128 128 SER SER B . n B 1 129 LYS 129 129 129 LYS LYS B . n B 1 130 GLU 130 130 130 GLU GLU B . n B 1 131 SER 131 131 131 SER SER B . n B 1 132 ALA 132 132 132 ALA ALA B . n B 1 133 GLU 133 133 133 GLU GLU B . n B 1 134 ARG 134 134 134 ARG ARG B . n B 1 135 GLU 135 135 135 GLU GLU B . n B 1 136 ILE 136 136 136 ILE ILE B . n B 1 137 SER 137 137 137 SER SER B . n B 1 138 LEU 138 138 138 LEU LEU B . n B 1 139 PHE 139 139 139 PHE PHE B . n B 1 140 PHE 140 140 140 PHE PHE B . n B 1 141 LYS 141 141 141 LYS LYS B . n B 1 142 PRO 142 142 142 PRO PRO B . n B 1 143 GLU 143 143 143 GLU GLU B . n B 1 144 GLU 144 144 144 GLU GLU B . n B 1 145 LEU 145 145 145 LEU LEU B . n B 1 146 PHE 146 146 146 PHE PHE B . n B 1 147 GLU 147 147 147 GLU GLU B . n B 1 148 TYR 148 148 148 TYR TYR B . n B 1 149 PRO 149 149 149 PRO PRO B . n B 1 150 ARG 150 150 150 ARG ARG B . n B 1 151 ALA 151 151 151 ALA ALA B . n B 1 152 ALA 152 152 152 ALA ALA B . n B 1 153 ASP 153 153 153 ASP ASP B . n B 1 154 TRP 154 154 154 TRP TRP B . n B 1 155 PHE 155 155 155 PHE PHE B . n B 1 156 TYR 156 156 156 TYR TYR B . n B 1 157 LYS 157 157 157 LYS LYS B . n B 1 158 LYS 158 158 158 LYS LYS B . n B 1 159 GLY 159 159 159 GLY GLY B . n B 1 160 ILE 160 160 160 ILE ILE B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 601 601 MG MG A . D 3 CL 1 701 701 CL CL A . E 3 CL 1 702 702 CL CL A . F 4 ADP 1 501 501 ADP ADP A . G 3 CL 1 703 703 CL CL B . H 3 CL 1 704 704 CL CL B . I 5 HOH 1 703 4 HOH TIP A . I 5 HOH 2 704 8 HOH TIP A . I 5 HOH 3 705 9 HOH TIP A . I 5 HOH 4 706 11 HOH TIP A . I 5 HOH 5 707 12 HOH TIP A . I 5 HOH 6 708 13 HOH TIP A . I 5 HOH 7 709 15 HOH TIP A . I 5 HOH 8 710 17 HOH TIP A . I 5 HOH 9 711 18 HOH TIP A . I 5 HOH 10 712 19 HOH TIP A . I 5 HOH 11 713 20 HOH TIP A . I 5 HOH 12 714 23 HOH TIP A . I 5 HOH 13 715 24 HOH TIP A . I 5 HOH 14 716 26 HOH TIP A . I 5 HOH 15 717 27 HOH TIP A . I 5 HOH 16 718 28 HOH TIP A . I 5 HOH 17 719 30 HOH TIP A . I 5 HOH 18 720 32 HOH TIP A . I 5 HOH 19 721 34 HOH TIP A . I 5 HOH 20 722 37 HOH TIP A . I 5 HOH 21 723 38 HOH TIP A . I 5 HOH 22 724 40 HOH TIP A . I 5 HOH 23 725 42 HOH TIP A . I 5 HOH 24 726 43 HOH TIP A . I 5 HOH 25 727 47 HOH TIP A . I 5 HOH 26 728 48 HOH TIP A . I 5 HOH 27 729 51 HOH TIP A . I 5 HOH 28 730 52 HOH TIP A . I 5 HOH 29 731 57 HOH TIP A . I 5 HOH 30 732 59 HOH TIP A . I 5 HOH 31 733 60 HOH TIP A . I 5 HOH 32 734 63 HOH TIP A . I 5 HOH 33 735 64 HOH TIP A . I 5 HOH 34 736 66 HOH TIP A . I 5 HOH 35 737 67 HOH TIP A . I 5 HOH 36 738 69 HOH TIP A . I 5 HOH 37 739 71 HOH TIP A . I 5 HOH 38 740 72 HOH TIP A . I 5 HOH 39 741 74 HOH TIP A . I 5 HOH 40 742 75 HOH TIP A . I 5 HOH 41 743 78 HOH TIP A . I 5 HOH 42 744 79 HOH TIP A . I 5 HOH 43 745 80 HOH TIP A . I 5 HOH 44 746 83 HOH TIP A . I 5 HOH 45 747 84 HOH TIP A . I 5 HOH 46 748 85 HOH TIP A . I 5 HOH 47 749 87 HOH TIP A . I 5 HOH 48 750 89 HOH TIP A . I 5 HOH 49 751 90 HOH TIP A . I 5 HOH 50 752 91 HOH TIP A . I 5 HOH 51 753 92 HOH TIP A . I 5 HOH 52 754 94 HOH TIP A . I 5 HOH 53 755 95 HOH TIP A . I 5 HOH 54 756 96 HOH TIP A . I 5 HOH 55 757 99 HOH TIP A . I 5 HOH 56 758 100 HOH TIP A . I 5 HOH 57 759 103 HOH TIP A . I 5 HOH 58 760 106 HOH TIP A . I 5 HOH 59 761 108 HOH TIP A . I 5 HOH 60 762 111 HOH TIP A . I 5 HOH 61 763 113 HOH TIP A . I 5 HOH 62 764 114 HOH TIP A . I 5 HOH 63 765 115 HOH TIP A . I 5 HOH 64 766 117 HOH TIP A . I 5 HOH 65 767 119 HOH TIP A . I 5 HOH 66 768 120 HOH TIP A . I 5 HOH 67 769 121 HOH TIP A . I 5 HOH 68 770 123 HOH TIP A . I 5 HOH 69 771 124 HOH TIP A . I 5 HOH 70 772 126 HOH TIP A . I 5 HOH 71 773 131 HOH TIP A . I 5 HOH 72 774 132 HOH TIP A . I 5 HOH 73 775 133 HOH TIP A . I 5 HOH 74 776 134 HOH TIP A . I 5 HOH 75 777 135 HOH TIP A . I 5 HOH 76 778 136 HOH TIP A . I 5 HOH 77 779 138 HOH TIP A . I 5 HOH 78 780 142 HOH TIP A . I 5 HOH 79 781 143 HOH TIP A . I 5 HOH 80 782 147 HOH TIP A . I 5 HOH 81 783 148 HOH TIP A . I 5 HOH 82 784 150 HOH TIP A . I 5 HOH 83 785 151 HOH TIP A . I 5 HOH 84 786 154 HOH TIP A . I 5 HOH 85 787 155 HOH TIP A . I 5 HOH 86 788 157 HOH TIP A . I 5 HOH 87 789 158 HOH TIP A . I 5 HOH 88 790 162 HOH TIP A . I 5 HOH 89 791 165 HOH TIP A . I 5 HOH 90 792 166 HOH TIP A . I 5 HOH 91 793 169 HOH TIP A . I 5 HOH 92 794 170 HOH TIP A . I 5 HOH 93 795 171 HOH TIP A . I 5 HOH 94 796 173 HOH TIP A . I 5 HOH 95 797 175 HOH TIP A . I 5 HOH 96 798 178 HOH TIP A . I 5 HOH 97 799 181 HOH TIP A . I 5 HOH 98 800 182 HOH TIP A . I 5 HOH 99 801 186 HOH TIP A . I 5 HOH 100 802 189 HOH TIP A . I 5 HOH 101 803 190 HOH TIP A . I 5 HOH 102 804 192 HOH TIP A . I 5 HOH 103 805 193 HOH TIP A . I 5 HOH 104 806 195 HOH TIP A . I 5 HOH 105 807 196 HOH TIP A . I 5 HOH 106 808 198 HOH TIP A . I 5 HOH 107 809 199 HOH TIP A . I 5 HOH 108 810 200 HOH TIP A . I 5 HOH 109 811 201 HOH TIP A . I 5 HOH 110 812 203 HOH TIP A . I 5 HOH 111 813 204 HOH TIP A . I 5 HOH 112 814 205 HOH TIP A . I 5 HOH 113 815 207 HOH TIP A . I 5 HOH 114 816 209 HOH TIP A . I 5 HOH 115 817 212 HOH TIP A . I 5 HOH 116 818 214 HOH TIP A . I 5 HOH 117 819 221 HOH TIP A . J 5 HOH 1 705 1 HOH TIP B . J 5 HOH 2 706 2 HOH TIP B . J 5 HOH 3 707 3 HOH TIP B . J 5 HOH 4 708 5 HOH TIP B . J 5 HOH 5 709 6 HOH TIP B . J 5 HOH 6 710 7 HOH TIP B . J 5 HOH 7 711 10 HOH TIP B . J 5 HOH 8 712 14 HOH TIP B . J 5 HOH 9 713 16 HOH TIP B . J 5 HOH 10 714 21 HOH TIP B . J 5 HOH 11 715 22 HOH TIP B . J 5 HOH 12 716 25 HOH TIP B . J 5 HOH 13 717 29 HOH TIP B . J 5 HOH 14 718 31 HOH TIP B . J 5 HOH 15 719 33 HOH TIP B . J 5 HOH 16 720 35 HOH TIP B . J 5 HOH 17 721 36 HOH TIP B . J 5 HOH 18 722 39 HOH TIP B . J 5 HOH 19 723 41 HOH TIP B . J 5 HOH 20 724 44 HOH TIP B . J 5 HOH 21 725 45 HOH TIP B . J 5 HOH 22 726 46 HOH TIP B . J 5 HOH 23 727 49 HOH TIP B . J 5 HOH 24 728 50 HOH TIP B . J 5 HOH 25 729 53 HOH TIP B . J 5 HOH 26 730 54 HOH TIP B . J 5 HOH 27 731 55 HOH TIP B . J 5 HOH 28 732 56 HOH TIP B . J 5 HOH 29 733 58 HOH TIP B . J 5 HOH 30 734 61 HOH TIP B . J 5 HOH 31 735 62 HOH TIP B . J 5 HOH 32 736 65 HOH TIP B . J 5 HOH 33 737 68 HOH TIP B . J 5 HOH 34 738 70 HOH TIP B . J 5 HOH 35 739 73 HOH TIP B . J 5 HOH 36 740 76 HOH TIP B . J 5 HOH 37 741 77 HOH TIP B . J 5 HOH 38 742 81 HOH TIP B . J 5 HOH 39 743 82 HOH TIP B . J 5 HOH 40 744 86 HOH TIP B . J 5 HOH 41 745 88 HOH TIP B . J 5 HOH 42 746 93 HOH TIP B . J 5 HOH 43 747 97 HOH TIP B . J 5 HOH 44 748 98 HOH TIP B . J 5 HOH 45 749 101 HOH TIP B . J 5 HOH 46 750 102 HOH TIP B . J 5 HOH 47 751 104 HOH TIP B . J 5 HOH 48 752 105 HOH TIP B . J 5 HOH 49 753 107 HOH TIP B . J 5 HOH 50 754 109 HOH TIP B . J 5 HOH 51 755 110 HOH TIP B . J 5 HOH 52 756 112 HOH TIP B . J 5 HOH 53 757 116 HOH TIP B . J 5 HOH 54 758 118 HOH TIP B . J 5 HOH 55 759 122 HOH TIP B . J 5 HOH 56 760 125 HOH TIP B . J 5 HOH 57 761 127 HOH TIP B . J 5 HOH 58 762 128 HOH TIP B . J 5 HOH 59 763 129 HOH TIP B . J 5 HOH 60 764 130 HOH TIP B . J 5 HOH 61 765 137 HOH TIP B . J 5 HOH 62 766 139 HOH TIP B . J 5 HOH 63 767 140 HOH TIP B . J 5 HOH 64 768 141 HOH TIP B . J 5 HOH 65 769 144 HOH TIP B . J 5 HOH 66 770 145 HOH TIP B . J 5 HOH 67 771 146 HOH TIP B . J 5 HOH 68 772 149 HOH TIP B . J 5 HOH 69 773 152 HOH TIP B . J 5 HOH 70 774 153 HOH TIP B . J 5 HOH 71 775 156 HOH TIP B . J 5 HOH 72 776 159 HOH TIP B . J 5 HOH 73 777 160 HOH TIP B . J 5 HOH 74 778 161 HOH TIP B . J 5 HOH 75 779 163 HOH TIP B . J 5 HOH 76 780 164 HOH TIP B . J 5 HOH 77 781 167 HOH TIP B . J 5 HOH 78 782 168 HOH TIP B . J 5 HOH 79 783 172 HOH TIP B . J 5 HOH 80 784 174 HOH TIP B . J 5 HOH 81 785 176 HOH TIP B . J 5 HOH 82 786 177 HOH TIP B . J 5 HOH 83 787 179 HOH TIP B . J 5 HOH 84 788 180 HOH TIP B . J 5 HOH 85 789 183 HOH TIP B . J 5 HOH 86 790 184 HOH TIP B . J 5 HOH 87 791 185 HOH TIP B . J 5 HOH 88 792 187 HOH TIP B . J 5 HOH 89 793 188 HOH TIP B . J 5 HOH 90 794 191 HOH TIP B . J 5 HOH 91 795 194 HOH TIP B . J 5 HOH 92 796 197 HOH TIP B . J 5 HOH 93 797 202 HOH TIP B . J 5 HOH 94 798 206 HOH TIP B . J 5 HOH 95 799 208 HOH TIP B . J 5 HOH 96 800 210 HOH TIP B . J 5 HOH 97 801 211 HOH TIP B . J 5 HOH 98 802 213 HOH TIP B . J 5 HOH 99 803 215 HOH TIP B . J 5 HOH 100 804 216 HOH TIP B . J 5 HOH 101 805 217 HOH TIP B . J 5 HOH 102 806 218 HOH TIP B . J 5 HOH 103 807 219 HOH TIP B . J 5 HOH 104 808 220 HOH TIP B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 23970 ? 1 MORE -295 ? 1 'SSA (A^2)' 34240 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5000000000 -0.8660254038 0.0000000000 69.8350000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5000000000 0.8660254038 0.0000000000 34.9175000000 -0.8660254038 -0.5000000000 0.0000000000 60.4788840733 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O1A ? F ADP . ? A ADP 501 ? 1_555 MG ? C MG . ? A MG 601 ? 1_555 O1B ? F ADP . ? A ADP 501 ? 1_555 65.3 ? 2 O1A ? F ADP . ? A ADP 501 ? 1_555 MG ? C MG . ? A MG 601 ? 1_555 O ? I HOH . ? A HOH 732 ? 1_555 96.0 ? 3 O1B ? F ADP . ? A ADP 501 ? 1_555 MG ? C MG . ? A MG 601 ? 1_555 O ? I HOH . ? A HOH 732 ? 1_555 149.6 ? 4 O1A ? F ADP . ? A ADP 501 ? 1_555 MG ? C MG . ? A MG 601 ? 1_555 O ? I HOH . ? A HOH 735 ? 1_555 95.6 ? 5 O1B ? F ADP . ? A ADP 501 ? 1_555 MG ? C MG . ? A MG 601 ? 1_555 O ? I HOH . ? A HOH 735 ? 1_555 110.2 ? 6 O ? I HOH . ? A HOH 732 ? 1_555 MG ? C MG . ? A MG 601 ? 1_555 O ? I HOH . ? A HOH 735 ? 1_555 94.7 ? 7 O1A ? F ADP . ? A ADP 501 ? 1_555 MG ? C MG . ? A MG 601 ? 1_555 O ? I HOH . ? A HOH 774 ? 1_555 156.5 ? 8 O1B ? F ADP . ? A ADP 501 ? 1_555 MG ? C MG . ? A MG 601 ? 1_555 O ? I HOH . ? A HOH 774 ? 1_555 92.9 ? 9 O ? I HOH . ? A HOH 732 ? 1_555 MG ? C MG . ? A MG 601 ? 1_555 O ? I HOH . ? A HOH 774 ? 1_555 99.6 ? 10 O ? I HOH . ? A HOH 735 ? 1_555 MG ? C MG . ? A MG 601 ? 1_555 O ? I HOH . ? A HOH 774 ? 1_555 100.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-03-08 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Source and taxonomy' 4 3 'Structure model' 'Version format compliance' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.value' 14 4 'Structure model' '_struct_conn.pdbx_dist_value' 15 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 16 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 17 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 18 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 20 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 21 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 22 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 23 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 24 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 25 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 26 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 27 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 CrystalClear 'data collection' '(MSC/RIGAKU)' ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 MOLREP phasing . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 41 ? ? -179.99 138.70 2 1 LEU A 113 ? ? -172.25 -64.89 3 1 SER A 116 ? ? -124.58 -138.44 4 1 VAL A 122 ? ? 66.00 -55.01 5 1 MET B 41 ? ? -172.10 146.18 6 1 LYS B 42 ? ? -174.35 149.99 7 1 GLU B 60 ? ? -96.24 35.52 8 1 LEU B 113 ? ? -172.72 -68.23 9 1 SER B 116 ? ? -108.89 -136.88 10 1 VAL B 122 ? ? 62.98 -62.57 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A PHE 2 ? A PHE 2 3 1 Y 1 A GLN 3 ? A GLN 3 4 1 Y 1 A MET 4 ? A MET 4 5 1 Y 1 A GLY 159 ? A GLY 159 6 1 Y 1 A ILE 160 ? A ILE 160 7 1 Y 1 B MET 1 ? B MET 1 8 1 Y 1 B PHE 2 ? B PHE 2 9 1 Y 1 B GLN 3 ? B GLN 3 10 1 Y 1 B MET 4 ? B MET 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ADP PB P N N 1 ADP O1B O N N 2 ADP O2B O N N 3 ADP O3B O N N 4 ADP PA P N S 5 ADP O1A O N N 6 ADP O2A O N N 7 ADP O3A O N N 8 ADP "O5'" O N N 9 ADP "C5'" C N N 10 ADP "C4'" C N R 11 ADP "O4'" O N N 12 ADP "C3'" C N S 13 ADP "O3'" O N N 14 ADP "C2'" C N R 15 ADP "O2'" O N N 16 ADP "C1'" C N R 17 ADP N9 N Y N 18 ADP C8 C Y N 19 ADP N7 N Y N 20 ADP C5 C Y N 21 ADP C6 C Y N 22 ADP N6 N N N 23 ADP N1 N Y N 24 ADP C2 C Y N 25 ADP N3 N Y N 26 ADP C4 C Y N 27 ADP HOB2 H N N 28 ADP HOB3 H N N 29 ADP HOA2 H N N 30 ADP "H5'1" H N N 31 ADP "H5'2" H N N 32 ADP "H4'" H N N 33 ADP "H3'" H N N 34 ADP "HO3'" H N N 35 ADP "H2'" H N N 36 ADP "HO2'" H N N 37 ADP "H1'" H N N 38 ADP H8 H N N 39 ADP HN61 H N N 40 ADP HN62 H N N 41 ADP H2 H N N 42 ALA N N N N 43 ALA CA C N S 44 ALA C C N N 45 ALA O O N N 46 ALA CB C N N 47 ALA OXT O N N 48 ALA H H N N 49 ALA H2 H N N 50 ALA HA H N N 51 ALA HB1 H N N 52 ALA HB2 H N N 53 ALA HB3 H N N 54 ALA HXT H N N 55 ARG N N N N 56 ARG CA C N S 57 ARG C C N N 58 ARG O O N N 59 ARG CB C N N 60 ARG CG C N N 61 ARG CD C N N 62 ARG NE N N N 63 ARG CZ C N N 64 ARG NH1 N N N 65 ARG NH2 N N N 66 ARG OXT O N N 67 ARG H H N N 68 ARG H2 H N N 69 ARG HA H N N 70 ARG HB2 H N N 71 ARG HB3 H N N 72 ARG HG2 H N N 73 ARG HG3 H N N 74 ARG HD2 H N N 75 ARG HD3 H N N 76 ARG HE H N N 77 ARG HH11 H N N 78 ARG HH12 H N N 79 ARG HH21 H N N 80 ARG HH22 H N N 81 ARG HXT H N N 82 ASN N N N N 83 ASN CA C N S 84 ASN C C N N 85 ASN O O N N 86 ASN CB C N N 87 ASN CG C N N 88 ASN OD1 O N N 89 ASN ND2 N N N 90 ASN OXT O N N 91 ASN H H N N 92 ASN H2 H N N 93 ASN HA H N N 94 ASN HB2 H N N 95 ASN HB3 H N N 96 ASN HD21 H N N 97 ASN HD22 H N N 98 ASN HXT H N N 99 ASP N N N N 100 ASP CA C N S 101 ASP C C N N 102 ASP O O N N 103 ASP CB C N N 104 ASP CG C N N 105 ASP OD1 O N N 106 ASP OD2 O N N 107 ASP OXT O N N 108 ASP H H N N 109 ASP H2 H N N 110 ASP HA H N N 111 ASP HB2 H N N 112 ASP HB3 H N N 113 ASP HD2 H N N 114 ASP HXT H N N 115 CL CL CL N N 116 CYS N N N N 117 CYS CA C N R 118 CYS C C N N 119 CYS O O N N 120 CYS CB C N N 121 CYS SG S N N 122 CYS OXT O N N 123 CYS H H N N 124 CYS H2 H N N 125 CYS HA H N N 126 CYS HB2 H N N 127 CYS HB3 H N N 128 CYS HG H N N 129 CYS HXT H N N 130 GLN N N N N 131 GLN CA C N S 132 GLN C C N N 133 GLN O O N N 134 GLN CB C N N 135 GLN CG C N N 136 GLN CD C N N 137 GLN OE1 O N N 138 GLN NE2 N N N 139 GLN OXT O N N 140 GLN H H N N 141 GLN H2 H N N 142 GLN HA H N N 143 GLN HB2 H N N 144 GLN HB3 H N N 145 GLN HG2 H N N 146 GLN HG3 H N N 147 GLN HE21 H N N 148 GLN HE22 H N N 149 GLN HXT H N N 150 GLU N N N N 151 GLU CA C N S 152 GLU C C N N 153 GLU O O N N 154 GLU CB C N N 155 GLU CG C N N 156 GLU CD C N N 157 GLU OE1 O N N 158 GLU OE2 O N N 159 GLU OXT O N N 160 GLU H H N N 161 GLU H2 H N N 162 GLU HA H N N 163 GLU HB2 H N N 164 GLU HB3 H N N 165 GLU HG2 H N N 166 GLU HG3 H N N 167 GLU HE2 H N N 168 GLU HXT H N N 169 GLY N N N N 170 GLY CA C N N 171 GLY C C N N 172 GLY O O N N 173 GLY OXT O N N 174 GLY H H N N 175 GLY H2 H N N 176 GLY HA2 H N N 177 GLY HA3 H N N 178 GLY HXT H N N 179 HIS N N N N 180 HIS CA C N S 181 HIS C C N N 182 HIS O O N N 183 HIS CB C N N 184 HIS CG C Y N 185 HIS ND1 N Y N 186 HIS CD2 C Y N 187 HIS CE1 C Y N 188 HIS NE2 N Y N 189 HIS OXT O N N 190 HIS H H N N 191 HIS H2 H N N 192 HIS HA H N N 193 HIS HB2 H N N 194 HIS HB3 H N N 195 HIS HD1 H N N 196 HIS HD2 H N N 197 HIS HE1 H N N 198 HIS HE2 H N N 199 HIS HXT H N N 200 HOH O O N N 201 HOH H1 H N N 202 HOH H2 H N N 203 ILE N N N N 204 ILE CA C N S 205 ILE C C N N 206 ILE O O N N 207 ILE CB C N S 208 ILE CG1 C N N 209 ILE CG2 C N N 210 ILE CD1 C N N 211 ILE OXT O N N 212 ILE H H N N 213 ILE H2 H N N 214 ILE HA H N N 215 ILE HB H N N 216 ILE HG12 H N N 217 ILE HG13 H N N 218 ILE HG21 H N N 219 ILE HG22 H N N 220 ILE HG23 H N N 221 ILE HD11 H N N 222 ILE HD12 H N N 223 ILE HD13 H N N 224 ILE HXT H N N 225 LEU N N N N 226 LEU CA C N S 227 LEU C C N N 228 LEU O O N N 229 LEU CB C N N 230 LEU CG C N N 231 LEU CD1 C N N 232 LEU CD2 C N N 233 LEU OXT O N N 234 LEU H H N N 235 LEU H2 H N N 236 LEU HA H N N 237 LEU HB2 H N N 238 LEU HB3 H N N 239 LEU HG H N N 240 LEU HD11 H N N 241 LEU HD12 H N N 242 LEU HD13 H N N 243 LEU HD21 H N N 244 LEU HD22 H N N 245 LEU HD23 H N N 246 LEU HXT H N N 247 LYS N N N N 248 LYS CA C N S 249 LYS C C N N 250 LYS O O N N 251 LYS CB C N N 252 LYS CG C N N 253 LYS CD C N N 254 LYS CE C N N 255 LYS NZ N N N 256 LYS OXT O N N 257 LYS H H N N 258 LYS H2 H N N 259 LYS HA H N N 260 LYS HB2 H N N 261 LYS HB3 H N N 262 LYS HG2 H N N 263 LYS HG3 H N N 264 LYS HD2 H N N 265 LYS HD3 H N N 266 LYS HE2 H N N 267 LYS HE3 H N N 268 LYS HZ1 H N N 269 LYS HZ2 H N N 270 LYS HZ3 H N N 271 LYS HXT H N N 272 MET N N N N 273 MET CA C N S 274 MET C C N N 275 MET O O N N 276 MET CB C N N 277 MET CG C N N 278 MET SD S N N 279 MET CE C N N 280 MET OXT O N N 281 MET H H N N 282 MET H2 H N N 283 MET HA H N N 284 MET HB2 H N N 285 MET HB3 H N N 286 MET HG2 H N N 287 MET HG3 H N N 288 MET HE1 H N N 289 MET HE2 H N N 290 MET HE3 H N N 291 MET HXT H N N 292 MG MG MG N N 293 PHE N N N N 294 PHE CA C N S 295 PHE C C N N 296 PHE O O N N 297 PHE CB C N N 298 PHE CG C Y N 299 PHE CD1 C Y N 300 PHE CD2 C Y N 301 PHE CE1 C Y N 302 PHE CE2 C Y N 303 PHE CZ C Y N 304 PHE OXT O N N 305 PHE H H N N 306 PHE H2 H N N 307 PHE HA H N N 308 PHE HB2 H N N 309 PHE HB3 H N N 310 PHE HD1 H N N 311 PHE HD2 H N N 312 PHE HE1 H N N 313 PHE HE2 H N N 314 PHE HZ H N N 315 PHE HXT H N N 316 PRO N N N N 317 PRO CA C N S 318 PRO C C N N 319 PRO O O N N 320 PRO CB C N N 321 PRO CG C N N 322 PRO CD C N N 323 PRO OXT O N N 324 PRO H H N N 325 PRO HA H N N 326 PRO HB2 H N N 327 PRO HB3 H N N 328 PRO HG2 H N N 329 PRO HG3 H N N 330 PRO HD2 H N N 331 PRO HD3 H N N 332 PRO HXT H N N 333 SER N N N N 334 SER CA C N S 335 SER C C N N 336 SER O O N N 337 SER CB C N N 338 SER OG O N N 339 SER OXT O N N 340 SER H H N N 341 SER H2 H N N 342 SER HA H N N 343 SER HB2 H N N 344 SER HB3 H N N 345 SER HG H N N 346 SER HXT H N N 347 THR N N N N 348 THR CA C N S 349 THR C C N N 350 THR O O N N 351 THR CB C N R 352 THR OG1 O N N 353 THR CG2 C N N 354 THR OXT O N N 355 THR H H N N 356 THR H2 H N N 357 THR HA H N N 358 THR HB H N N 359 THR HG1 H N N 360 THR HG21 H N N 361 THR HG22 H N N 362 THR HG23 H N N 363 THR HXT H N N 364 TRP N N N N 365 TRP CA C N S 366 TRP C C N N 367 TRP O O N N 368 TRP CB C N N 369 TRP CG C Y N 370 TRP CD1 C Y N 371 TRP CD2 C Y N 372 TRP NE1 N Y N 373 TRP CE2 C Y N 374 TRP CE3 C Y N 375 TRP CZ2 C Y N 376 TRP CZ3 C Y N 377 TRP CH2 C Y N 378 TRP OXT O N N 379 TRP H H N N 380 TRP H2 H N N 381 TRP HA H N N 382 TRP HB2 H N N 383 TRP HB3 H N N 384 TRP HD1 H N N 385 TRP HE1 H N N 386 TRP HE3 H N N 387 TRP HZ2 H N N 388 TRP HZ3 H N N 389 TRP HH2 H N N 390 TRP HXT H N N 391 TYR N N N N 392 TYR CA C N S 393 TYR C C N N 394 TYR O O N N 395 TYR CB C N N 396 TYR CG C Y N 397 TYR CD1 C Y N 398 TYR CD2 C Y N 399 TYR CE1 C Y N 400 TYR CE2 C Y N 401 TYR CZ C Y N 402 TYR OH O N N 403 TYR OXT O N N 404 TYR H H N N 405 TYR H2 H N N 406 TYR HA H N N 407 TYR HB2 H N N 408 TYR HB3 H N N 409 TYR HD1 H N N 410 TYR HD2 H N N 411 TYR HE1 H N N 412 TYR HE2 H N N 413 TYR HH H N N 414 TYR HXT H N N 415 VAL N N N N 416 VAL CA C N S 417 VAL C C N N 418 VAL O O N N 419 VAL CB C N N 420 VAL CG1 C N N 421 VAL CG2 C N N 422 VAL OXT O N N 423 VAL H H N N 424 VAL H2 H N N 425 VAL HA H N N 426 VAL HB H N N 427 VAL HG11 H N N 428 VAL HG12 H N N 429 VAL HG13 H N N 430 VAL HG21 H N N 431 VAL HG22 H N N 432 VAL HG23 H N N 433 VAL HXT H N N 434 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ADP PB O1B doub N N 1 ADP PB O2B sing N N 2 ADP PB O3B sing N N 3 ADP PB O3A sing N N 4 ADP O2B HOB2 sing N N 5 ADP O3B HOB3 sing N N 6 ADP PA O1A doub N N 7 ADP PA O2A sing N N 8 ADP PA O3A sing N N 9 ADP PA "O5'" sing N N 10 ADP O2A HOA2 sing N N 11 ADP "O5'" "C5'" sing N N 12 ADP "C5'" "C4'" sing N N 13 ADP "C5'" "H5'1" sing N N 14 ADP "C5'" "H5'2" sing N N 15 ADP "C4'" "O4'" sing N N 16 ADP "C4'" "C3'" sing N N 17 ADP "C4'" "H4'" sing N N 18 ADP "O4'" "C1'" sing N N 19 ADP "C3'" "O3'" sing N N 20 ADP "C3'" "C2'" sing N N 21 ADP "C3'" "H3'" sing N N 22 ADP "O3'" "HO3'" sing N N 23 ADP "C2'" "O2'" sing N N 24 ADP "C2'" "C1'" sing N N 25 ADP "C2'" "H2'" sing N N 26 ADP "O2'" "HO2'" sing N N 27 ADP "C1'" N9 sing N N 28 ADP "C1'" "H1'" sing N N 29 ADP N9 C8 sing Y N 30 ADP N9 C4 sing Y N 31 ADP C8 N7 doub Y N 32 ADP C8 H8 sing N N 33 ADP N7 C5 sing Y N 34 ADP C5 C6 sing Y N 35 ADP C5 C4 doub Y N 36 ADP C6 N6 sing N N 37 ADP C6 N1 doub Y N 38 ADP N6 HN61 sing N N 39 ADP N6 HN62 sing N N 40 ADP N1 C2 sing Y N 41 ADP C2 N3 doub Y N 42 ADP C2 H2 sing N N 43 ADP N3 C4 sing Y N 44 ALA N CA sing N N 45 ALA N H sing N N 46 ALA N H2 sing N N 47 ALA CA C sing N N 48 ALA CA CB sing N N 49 ALA CA HA sing N N 50 ALA C O doub N N 51 ALA C OXT sing N N 52 ALA CB HB1 sing N N 53 ALA CB HB2 sing N N 54 ALA CB HB3 sing N N 55 ALA OXT HXT sing N N 56 ARG N CA sing N N 57 ARG N H sing N N 58 ARG N H2 sing N N 59 ARG CA C sing N N 60 ARG CA CB sing N N 61 ARG CA HA sing N N 62 ARG C O doub N N 63 ARG C OXT sing N N 64 ARG CB CG sing N N 65 ARG CB HB2 sing N N 66 ARG CB HB3 sing N N 67 ARG CG CD sing N N 68 ARG CG HG2 sing N N 69 ARG CG HG3 sing N N 70 ARG CD NE sing N N 71 ARG CD HD2 sing N N 72 ARG CD HD3 sing N N 73 ARG NE CZ sing N N 74 ARG NE HE sing N N 75 ARG CZ NH1 sing N N 76 ARG CZ NH2 doub N N 77 ARG NH1 HH11 sing N N 78 ARG NH1 HH12 sing N N 79 ARG NH2 HH21 sing N N 80 ARG NH2 HH22 sing N N 81 ARG OXT HXT sing N N 82 ASN N CA sing N N 83 ASN N H sing N N 84 ASN N H2 sing N N 85 ASN CA C sing N N 86 ASN CA CB sing N N 87 ASN CA HA sing N N 88 ASN C O doub N N 89 ASN C OXT sing N N 90 ASN CB CG sing N N 91 ASN CB HB2 sing N N 92 ASN CB HB3 sing N N 93 ASN CG OD1 doub N N 94 ASN CG ND2 sing N N 95 ASN ND2 HD21 sing N N 96 ASN ND2 HD22 sing N N 97 ASN OXT HXT sing N N 98 ASP N CA sing N N 99 ASP N H sing N N 100 ASP N H2 sing N N 101 ASP CA C sing N N 102 ASP CA CB sing N N 103 ASP CA HA sing N N 104 ASP C O doub N N 105 ASP C OXT sing N N 106 ASP CB CG sing N N 107 ASP CB HB2 sing N N 108 ASP CB HB3 sing N N 109 ASP CG OD1 doub N N 110 ASP CG OD2 sing N N 111 ASP OD2 HD2 sing N N 112 ASP OXT HXT sing N N 113 CYS N CA sing N N 114 CYS N H sing N N 115 CYS N H2 sing N N 116 CYS CA C sing N N 117 CYS CA CB sing N N 118 CYS CA HA sing N N 119 CYS C O doub N N 120 CYS C OXT sing N N 121 CYS CB SG sing N N 122 CYS CB HB2 sing N N 123 CYS CB HB3 sing N N 124 CYS SG HG sing N N 125 CYS OXT HXT sing N N 126 GLN N CA sing N N 127 GLN N H sing N N 128 GLN N H2 sing N N 129 GLN CA C sing N N 130 GLN CA CB sing N N 131 GLN CA HA sing N N 132 GLN C O doub N N 133 GLN C OXT sing N N 134 GLN CB CG sing N N 135 GLN CB HB2 sing N N 136 GLN CB HB3 sing N N 137 GLN CG CD sing N N 138 GLN CG HG2 sing N N 139 GLN CG HG3 sing N N 140 GLN CD OE1 doub N N 141 GLN CD NE2 sing N N 142 GLN NE2 HE21 sing N N 143 GLN NE2 HE22 sing N N 144 GLN OXT HXT sing N N 145 GLU N CA sing N N 146 GLU N H sing N N 147 GLU N H2 sing N N 148 GLU CA C sing N N 149 GLU CA CB sing N N 150 GLU CA HA sing N N 151 GLU C O doub N N 152 GLU C OXT sing N N 153 GLU CB CG sing N N 154 GLU CB HB2 sing N N 155 GLU CB HB3 sing N N 156 GLU CG CD sing N N 157 GLU CG HG2 sing N N 158 GLU CG HG3 sing N N 159 GLU CD OE1 doub N N 160 GLU CD OE2 sing N N 161 GLU OE2 HE2 sing N N 162 GLU OXT HXT sing N N 163 GLY N CA sing N N 164 GLY N H sing N N 165 GLY N H2 sing N N 166 GLY CA C sing N N 167 GLY CA HA2 sing N N 168 GLY CA HA3 sing N N 169 GLY C O doub N N 170 GLY C OXT sing N N 171 GLY OXT HXT sing N N 172 HIS N CA sing N N 173 HIS N H sing N N 174 HIS N H2 sing N N 175 HIS CA C sing N N 176 HIS CA CB sing N N 177 HIS CA HA sing N N 178 HIS C O doub N N 179 HIS C OXT sing N N 180 HIS CB CG sing N N 181 HIS CB HB2 sing N N 182 HIS CB HB3 sing N N 183 HIS CG ND1 sing Y N 184 HIS CG CD2 doub Y N 185 HIS ND1 CE1 doub Y N 186 HIS ND1 HD1 sing N N 187 HIS CD2 NE2 sing Y N 188 HIS CD2 HD2 sing N N 189 HIS CE1 NE2 sing Y N 190 HIS CE1 HE1 sing N N 191 HIS NE2 HE2 sing N N 192 HIS OXT HXT sing N N 193 HOH O H1 sing N N 194 HOH O H2 sing N N 195 ILE N CA sing N N 196 ILE N H sing N N 197 ILE N H2 sing N N 198 ILE CA C sing N N 199 ILE CA CB sing N N 200 ILE CA HA sing N N 201 ILE C O doub N N 202 ILE C OXT sing N N 203 ILE CB CG1 sing N N 204 ILE CB CG2 sing N N 205 ILE CB HB sing N N 206 ILE CG1 CD1 sing N N 207 ILE CG1 HG12 sing N N 208 ILE CG1 HG13 sing N N 209 ILE CG2 HG21 sing N N 210 ILE CG2 HG22 sing N N 211 ILE CG2 HG23 sing N N 212 ILE CD1 HD11 sing N N 213 ILE CD1 HD12 sing N N 214 ILE CD1 HD13 sing N N 215 ILE OXT HXT sing N N 216 LEU N CA sing N N 217 LEU N H sing N N 218 LEU N H2 sing N N 219 LEU CA C sing N N 220 LEU CA CB sing N N 221 LEU CA HA sing N N 222 LEU C O doub N N 223 LEU C OXT sing N N 224 LEU CB CG sing N N 225 LEU CB HB2 sing N N 226 LEU CB HB3 sing N N 227 LEU CG CD1 sing N N 228 LEU CG CD2 sing N N 229 LEU CG HG sing N N 230 LEU CD1 HD11 sing N N 231 LEU CD1 HD12 sing N N 232 LEU CD1 HD13 sing N N 233 LEU CD2 HD21 sing N N 234 LEU CD2 HD22 sing N N 235 LEU CD2 HD23 sing N N 236 LEU OXT HXT sing N N 237 LYS N CA sing N N 238 LYS N H sing N N 239 LYS N H2 sing N N 240 LYS CA C sing N N 241 LYS CA CB sing N N 242 LYS CA HA sing N N 243 LYS C O doub N N 244 LYS C OXT sing N N 245 LYS CB CG sing N N 246 LYS CB HB2 sing N N 247 LYS CB HB3 sing N N 248 LYS CG CD sing N N 249 LYS CG HG2 sing N N 250 LYS CG HG3 sing N N 251 LYS CD CE sing N N 252 LYS CD HD2 sing N N 253 LYS CD HD3 sing N N 254 LYS CE NZ sing N N 255 LYS CE HE2 sing N N 256 LYS CE HE3 sing N N 257 LYS NZ HZ1 sing N N 258 LYS NZ HZ2 sing N N 259 LYS NZ HZ3 sing N N 260 LYS OXT HXT sing N N 261 MET N CA sing N N 262 MET N H sing N N 263 MET N H2 sing N N 264 MET CA C sing N N 265 MET CA CB sing N N 266 MET CA HA sing N N 267 MET C O doub N N 268 MET C OXT sing N N 269 MET CB CG sing N N 270 MET CB HB2 sing N N 271 MET CB HB3 sing N N 272 MET CG SD sing N N 273 MET CG HG2 sing N N 274 MET CG HG3 sing N N 275 MET SD CE sing N N 276 MET CE HE1 sing N N 277 MET CE HE2 sing N N 278 MET CE HE3 sing N N 279 MET OXT HXT sing N N 280 PHE N CA sing N N 281 PHE N H sing N N 282 PHE N H2 sing N N 283 PHE CA C sing N N 284 PHE CA CB sing N N 285 PHE CA HA sing N N 286 PHE C O doub N N 287 PHE C OXT sing N N 288 PHE CB CG sing N N 289 PHE CB HB2 sing N N 290 PHE CB HB3 sing N N 291 PHE CG CD1 doub Y N 292 PHE CG CD2 sing Y N 293 PHE CD1 CE1 sing Y N 294 PHE CD1 HD1 sing N N 295 PHE CD2 CE2 doub Y N 296 PHE CD2 HD2 sing N N 297 PHE CE1 CZ doub Y N 298 PHE CE1 HE1 sing N N 299 PHE CE2 CZ sing Y N 300 PHE CE2 HE2 sing N N 301 PHE CZ HZ sing N N 302 PHE OXT HXT sing N N 303 PRO N CA sing N N 304 PRO N CD sing N N 305 PRO N H sing N N 306 PRO CA C sing N N 307 PRO CA CB sing N N 308 PRO CA HA sing N N 309 PRO C O doub N N 310 PRO C OXT sing N N 311 PRO CB CG sing N N 312 PRO CB HB2 sing N N 313 PRO CB HB3 sing N N 314 PRO CG CD sing N N 315 PRO CG HG2 sing N N 316 PRO CG HG3 sing N N 317 PRO CD HD2 sing N N 318 PRO CD HD3 sing N N 319 PRO OXT HXT sing N N 320 SER N CA sing N N 321 SER N H sing N N 322 SER N H2 sing N N 323 SER CA C sing N N 324 SER CA CB sing N N 325 SER CA HA sing N N 326 SER C O doub N N 327 SER C OXT sing N N 328 SER CB OG sing N N 329 SER CB HB2 sing N N 330 SER CB HB3 sing N N 331 SER OG HG sing N N 332 SER OXT HXT sing N N 333 THR N CA sing N N 334 THR N H sing N N 335 THR N H2 sing N N 336 THR CA C sing N N 337 THR CA CB sing N N 338 THR CA HA sing N N 339 THR C O doub N N 340 THR C OXT sing N N 341 THR CB OG1 sing N N 342 THR CB CG2 sing N N 343 THR CB HB sing N N 344 THR OG1 HG1 sing N N 345 THR CG2 HG21 sing N N 346 THR CG2 HG22 sing N N 347 THR CG2 HG23 sing N N 348 THR OXT HXT sing N N 349 TRP N CA sing N N 350 TRP N H sing N N 351 TRP N H2 sing N N 352 TRP CA C sing N N 353 TRP CA CB sing N N 354 TRP CA HA sing N N 355 TRP C O doub N N 356 TRP C OXT sing N N 357 TRP CB CG sing N N 358 TRP CB HB2 sing N N 359 TRP CB HB3 sing N N 360 TRP CG CD1 doub Y N 361 TRP CG CD2 sing Y N 362 TRP CD1 NE1 sing Y N 363 TRP CD1 HD1 sing N N 364 TRP CD2 CE2 doub Y N 365 TRP CD2 CE3 sing Y N 366 TRP NE1 CE2 sing Y N 367 TRP NE1 HE1 sing N N 368 TRP CE2 CZ2 sing Y N 369 TRP CE3 CZ3 doub Y N 370 TRP CE3 HE3 sing N N 371 TRP CZ2 CH2 doub Y N 372 TRP CZ2 HZ2 sing N N 373 TRP CZ3 CH2 sing Y N 374 TRP CZ3 HZ3 sing N N 375 TRP CH2 HH2 sing N N 376 TRP OXT HXT sing N N 377 TYR N CA sing N N 378 TYR N H sing N N 379 TYR N H2 sing N N 380 TYR CA C sing N N 381 TYR CA CB sing N N 382 TYR CA HA sing N N 383 TYR C O doub N N 384 TYR C OXT sing N N 385 TYR CB CG sing N N 386 TYR CB HB2 sing N N 387 TYR CB HB3 sing N N 388 TYR CG CD1 doub Y N 389 TYR CG CD2 sing Y N 390 TYR CD1 CE1 sing Y N 391 TYR CD1 HD1 sing N N 392 TYR CD2 CE2 doub Y N 393 TYR CD2 HD2 sing N N 394 TYR CE1 CZ doub Y N 395 TYR CE1 HE1 sing N N 396 TYR CE2 CZ sing Y N 397 TYR CE2 HE2 sing N N 398 TYR CZ OH sing N N 399 TYR OH HH sing N N 400 TYR OXT HXT sing N N 401 VAL N CA sing N N 402 VAL N H sing N N 403 VAL N H2 sing N N 404 VAL CA C sing N N 405 VAL CA CB sing N N 406 VAL CA HA sing N N 407 VAL C O doub N N 408 VAL C OXT sing N N 409 VAL CB CG1 sing N N 410 VAL CB CG2 sing N N 411 VAL CB HB sing N N 412 VAL CG1 HG11 sing N N 413 VAL CG1 HG12 sing N N 414 VAL CG1 HG13 sing N N 415 VAL CG2 HG21 sing N N 416 VAL CG2 HG22 sing N N 417 VAL CG2 HG23 sing N N 418 VAL OXT HXT sing N N 419 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'CHLORIDE ION' CL 4 "ADENOSINE-5'-DIPHOSPHATE" ADP 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2CWK _pdbx_initial_refinement_model.details 'PDB ENTRY 2CWK' #