HEADER PROTEIN BINDING 29-SEP-06 2DZO TITLE CRYSTAL STRUCTURE ANALYSIS OF YEAST NAS6P COMPLEXED WITH THE TITLE 2 PROTEASOME SUBUNIT, RPT3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE 26S PROTEASOME REGULATORY SUBUNIT P28; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: NAS6P, PROTEASOME NON-ATPASE SUBUNIT 6; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 26S PROTEASE REGULATORY SUBUNIT 6B HOMOLOG; COMPND 8 CHAIN: B, D; COMPND 9 FRAGMENT: C-TERMINAL DOMAIN; COMPND 10 SYNONYM: RPT3, YNT1 PROTEIN, TAT-BINDING HOMOLOG 2; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PETDUET1; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 11 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 12 ORGANISM_TAXID: 4932; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PETDUET1 KEYWDS ANKYRIN REPEATS, A-HELICAL DOMAIN, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, PROTEIN KEYWDS 4 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR Y.NAKAMURA,B.PADMANABHAN,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 03-APR-24 2DZO 1 REMARK REVDAT 3 13-MAR-24 2DZO 1 SEQADV REVDAT 2 24-FEB-09 2DZO 1 VERSN REVDAT 1 16-OCT-07 2DZO 0 JRNL AUTH Y.NAKAMURA,B.PADMANABHAN,S.YOKOYAMA JRNL TITL CRYSTAL STRUCTURE ANALYSIS OF YEAST NAS6P COMPLEXED WITH THE JRNL TITL 2 PROTEASOME SUBUNIT, RPT3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 15529 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1553 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3300 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 139 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4557 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 206 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.020 REMARK 3 BOND ANGLES (DEGREES) : 1.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.300 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DZO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000026042. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-05 REMARK 200 TEMPERATURE (KELVIN) : 120.0 REMARK 200 PH : 6.80 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16358 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NAS6P-RPT3 COMPLEX, P21 FORM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG6K, MES, PH 6.80, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.36067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.72133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 347 REMARK 465 GLU B 348 REMARK 465 ARG B 349 REMARK 465 ARG B 350 REMARK 465 LEU B 351 REMARK 465 ILE B 352 REMARK 465 PHE B 353 REMARK 465 GLY B 354 REMARK 465 THR B 355 REMARK 465 ILE B 356 REMARK 465 ALA B 357 REMARK 465 SER B 358 REMARK 465 LYS B 359 REMARK 465 THR B 417 REMARK 465 ASP B 418 REMARK 465 ASN B 419 REMARK 465 THR B 420 REMARK 465 VAL B 421 REMARK 465 ASP B 422 REMARK 465 LYS B 423 REMARK 465 PHE B 424 REMARK 465 ASP B 425 REMARK 465 PHE B 426 REMARK 465 TYR B 427 REMARK 465 LYS B 428 REMARK 465 MET C 1 REMARK 465 MET D 347 REMARK 465 VAL D 415 REMARK 465 LYS D 416 REMARK 465 THR D 417 REMARK 465 ASP D 418 REMARK 465 ASN D 419 REMARK 465 THR D 420 REMARK 465 VAL D 421 REMARK 465 ASP D 422 REMARK 465 LYS D 423 REMARK 465 PHE D 424 REMARK 465 ASP D 425 REMARK 465 PHE D 426 REMARK 465 TYR D 427 REMARK 465 LYS D 428 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA GLY C 151 O HOH C 295 1.82 REMARK 500 NE2 GLN C 219 O HOH C 229 1.84 REMARK 500 CE2 PHE C 15 OE1 GLN C 19 1.88 REMARK 500 O SER C 53 O HOH C 232 1.91 REMARK 500 OD1 ASP A 93 O HOH A 249 1.95 REMARK 500 O ASP D 376 O HOH D 431 2.02 REMARK 500 O LEU C 29 O HOH C 320 2.12 REMARK 500 O HOH A 255 O HOH A 256 2.14 REMARK 500 CG LYS A 210 O HOH A 238 2.15 REMARK 500 O ASN C 129 O HOH C 276 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 268 O HOH B 431 2665 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 2 -58.45 -9.49 REMARK 500 PHE A 15 -48.23 -28.40 REMARK 500 SER A 27 2.19 -62.80 REMARK 500 GLN A 34 8.25 -61.04 REMARK 500 HIS A 41 -72.41 -41.84 REMARK 500 THR A 52 -76.07 -47.73 REMARK 500 LEU A 55 -38.79 -37.51 REMARK 500 ASP A 70 1.29 -56.53 REMARK 500 PRO A 75 -19.60 -49.41 REMARK 500 GLU A 86 -70.30 -55.82 REMARK 500 ASP A 93 86.30 -69.52 REMARK 500 ASN A 105 -31.60 -34.76 REMARK 500 HIS A 112 -74.66 -61.04 REMARK 500 LYS A 118 33.61 83.07 REMARK 500 ALA A 131 94.22 41.86 REMARK 500 LYS A 138 16.74 -46.67 REMARK 500 LYS A 164 63.32 23.67 REMARK 500 ASP A 171 -167.83 -59.64 REMARK 500 GLN A 173 -5.76 -59.99 REMARK 500 ALA A 181 31.98 -71.71 REMARK 500 LEU A 182 -32.57 -145.10 REMARK 500 HIS A 186 54.98 -104.46 REMARK 500 LEU A 193 -79.44 -60.14 REMARK 500 LYS A 207 -13.29 -164.50 REMARK 500 VAL A 214 35.04 -98.34 REMARK 500 VAL A 220 -72.40 -58.10 REMARK 500 LYS A 221 -70.27 -30.88 REMARK 500 PHE A 224 -73.48 -73.53 REMARK 500 ASN A 226 43.43 -73.86 REMARK 500 ASN A 227 -10.51 172.07 REMARK 500 ARG B 374 -71.21 -61.90 REMARK 500 ASP B 376 64.10 7.06 REMARK 500 SER B 377 56.96 -173.46 REMARK 500 LYS B 397 9.41 -68.20 REMARK 500 TYR B 400 -60.76 -101.16 REMARK 500 ALA B 412 -79.65 -51.30 REMARK 500 THR B 413 55.41 -67.68 REMARK 500 GLN B 414 -9.20 -166.58 REMARK 500 VAL B 415 -117.49 -109.39 REMARK 500 GLU C 12 72.45 -101.22 REMARK 500 ASN C 13 102.66 -27.10 REMARK 500 PHE C 16 86.50 -68.79 REMARK 500 LYS C 17 -22.32 163.83 REMARK 500 VAL C 18 -78.27 -79.58 REMARK 500 LYS C 25 96.43 166.90 REMARK 500 GLN C 34 3.53 -52.24 REMARK 500 LEU C 40 -39.37 -38.67 REMARK 500 PHE C 46 36.27 -96.98 REMARK 500 GLN C 47 68.51 36.40 REMARK 500 GLU C 50 -73.42 -58.29 REMARK 500 REMARK 500 THIS ENTRY HAS 74 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DZN RELATED DB: PDB REMARK 900 THE PROTEIN COMPLEX WAS DETERMINED IN THE OTHER CRYSTAL FORM REMARK 900 RELATED ID: AR_001000295.3 RELATED DB: TARGETDB DBREF 2DZO A 1 228 UNP P50086 PSDA_YEAST 1 228 DBREF 2DZO C 1 228 UNP P50086 PSDA_YEAST 1 228 DBREF 2DZO B 348 428 UNP P33298 PRS6B_YEAST 348 428 DBREF 2DZO D 348 428 UNP P33298 PRS6B_YEAST 348 428 SEQADV 2DZO MET B 347 UNP P33298 INITIATING METHIONINE SEQADV 2DZO MET D 347 UNP P33298 INITIATING METHIONINE SEQRES 1 A 228 MET SER ASN TYR PRO LEU HIS GLN ALA CYS MET GLU ASN SEQRES 2 A 228 GLU PHE PHE LYS VAL GLN GLU LEU LEU HIS SER LYS PRO SEQRES 3 A 228 SER LEU LEU LEU GLN LYS ASP GLN ASP GLY ARG ILE PRO SEQRES 4 A 228 LEU HIS TRP SER VAL SER PHE GLN ALA HIS GLU ILE THR SEQRES 5 A 228 SER PHE LEU LEU SER LYS MET GLU ASN VAL ASN LEU ASP SEQRES 6 A 228 ASP TYR PRO ASP ASP SER GLY TRP THR PRO PHE HIS ILE SEQRES 7 A 228 ALA CYS SER VAL GLY ASN LEU GLU VAL VAL LYS SER LEU SEQRES 8 A 228 TYR ASP ARG PRO LEU LYS PRO ASP LEU ASN LYS ILE THR SEQRES 9 A 228 ASN GLN GLY VAL THR CYS LEU HIS LEU ALA VAL GLY LYS SEQRES 10 A 228 LYS TRP PHE GLU VAL SER GLN PHE LEU ILE GLU ASN GLY SEQRES 11 A 228 ALA SER VAL ARG ILE LYS ASP LYS PHE ASN GLN ILE PRO SEQRES 12 A 228 LEU HIS ARG ALA ALA SER VAL GLY SER LEU LYS LEU ILE SEQRES 13 A 228 GLU LEU LEU CYS GLY LEU GLY LYS SER ALA VAL ASN TRP SEQRES 14 A 228 GLN ASP LYS GLN GLY TRP THR PRO LEU PHE HIS ALA LEU SEQRES 15 A 228 ALA GLU GLY HIS GLY ASP ALA ALA VAL LEU LEU VAL GLU SEQRES 16 A 228 LYS TYR GLY ALA GLU TYR ASP LEU VAL ASP ASN LYS GLY SEQRES 17 A 228 ALA LYS ALA GLU ASP VAL ALA LEU ASN GLU GLN VAL LYS SEQRES 18 A 228 LYS PHE PHE LEU ASN ASN VAL SEQRES 1 B 82 MET GLU ARG ARG LEU ILE PHE GLY THR ILE ALA SER LYS SEQRES 2 B 82 MET SER LEU ALA PRO GLU ALA ASP LEU ASP SER LEU ILE SEQRES 3 B 82 ILE ARG ASN ASP SER LEU SER GLY ALA VAL ILE ALA ALA SEQRES 4 B 82 ILE MET GLN GLU ALA GLY LEU ARG ALA VAL ARG LYS ASN SEQRES 5 B 82 ARG TYR VAL ILE LEU GLN SER ASP LEU GLU GLU ALA TYR SEQRES 6 B 82 ALA THR GLN VAL LYS THR ASP ASN THR VAL ASP LYS PHE SEQRES 7 B 82 ASP PHE TYR LYS SEQRES 1 C 228 MET SER ASN TYR PRO LEU HIS GLN ALA CYS MET GLU ASN SEQRES 2 C 228 GLU PHE PHE LYS VAL GLN GLU LEU LEU HIS SER LYS PRO SEQRES 3 C 228 SER LEU LEU LEU GLN LYS ASP GLN ASP GLY ARG ILE PRO SEQRES 4 C 228 LEU HIS TRP SER VAL SER PHE GLN ALA HIS GLU ILE THR SEQRES 5 C 228 SER PHE LEU LEU SER LYS MET GLU ASN VAL ASN LEU ASP SEQRES 6 C 228 ASP TYR PRO ASP ASP SER GLY TRP THR PRO PHE HIS ILE SEQRES 7 C 228 ALA CYS SER VAL GLY ASN LEU GLU VAL VAL LYS SER LEU SEQRES 8 C 228 TYR ASP ARG PRO LEU LYS PRO ASP LEU ASN LYS ILE THR SEQRES 9 C 228 ASN GLN GLY VAL THR CYS LEU HIS LEU ALA VAL GLY LYS SEQRES 10 C 228 LYS TRP PHE GLU VAL SER GLN PHE LEU ILE GLU ASN GLY SEQRES 11 C 228 ALA SER VAL ARG ILE LYS ASP LYS PHE ASN GLN ILE PRO SEQRES 12 C 228 LEU HIS ARG ALA ALA SER VAL GLY SER LEU LYS LEU ILE SEQRES 13 C 228 GLU LEU LEU CYS GLY LEU GLY LYS SER ALA VAL ASN TRP SEQRES 14 C 228 GLN ASP LYS GLN GLY TRP THR PRO LEU PHE HIS ALA LEU SEQRES 15 C 228 ALA GLU GLY HIS GLY ASP ALA ALA VAL LEU LEU VAL GLU SEQRES 16 C 228 LYS TYR GLY ALA GLU TYR ASP LEU VAL ASP ASN LYS GLY SEQRES 17 C 228 ALA LYS ALA GLU ASP VAL ALA LEU ASN GLU GLN VAL LYS SEQRES 18 C 228 LYS PHE PHE LEU ASN ASN VAL SEQRES 1 D 82 MET GLU ARG ARG LEU ILE PHE GLY THR ILE ALA SER LYS SEQRES 2 D 82 MET SER LEU ALA PRO GLU ALA ASP LEU ASP SER LEU ILE SEQRES 3 D 82 ILE ARG ASN ASP SER LEU SER GLY ALA VAL ILE ALA ALA SEQRES 4 D 82 ILE MET GLN GLU ALA GLY LEU ARG ALA VAL ARG LYS ASN SEQRES 5 D 82 ARG TYR VAL ILE LEU GLN SER ASP LEU GLU GLU ALA TYR SEQRES 6 D 82 ALA THR GLN VAL LYS THR ASP ASN THR VAL ASP LYS PHE SEQRES 7 D 82 ASP PHE TYR LYS FORMUL 5 HOH *206(H2 O) HELIX 1 1 TYR A 4 GLU A 12 1 9 HELIX 2 2 GLU A 14 LYS A 25 1 12 HELIX 3 3 PRO A 26 LEU A 29 5 4 HELIX 4 4 ILE A 38 PHE A 46 1 9 HELIX 5 5 ALA A 48 LYS A 58 1 11 HELIX 6 6 ASN A 63 TYR A 67 5 5 HELIX 7 7 THR A 74 GLY A 83 1 10 HELIX 8 8 ASN A 84 ASP A 93 1 10 HELIX 9 9 THR A 109 LYS A 118 1 10 HELIX 10 10 TRP A 119 ASN A 129 1 11 HELIX 11 11 ILE A 142 GLY A 151 1 10 HELIX 12 12 SER A 152 CYS A 160 1 9 HELIX 13 13 THR A 176 GLU A 184 1 9 HELIX 14 14 HIS A 186 TYR A 197 1 12 HELIX 15 15 ASN A 217 ASN A 226 1 10 HELIX 16 16 ASP B 367 ARG B 374 1 8 HELIX 17 17 SER B 379 LYS B 397 1 19 HELIX 18 18 LEU B 403 THR B 413 1 11 HELIX 19 19 TYR C 4 GLU C 12 1 9 HELIX 20 20 LYS C 17 SER C 24 1 8 HELIX 21 21 LYS C 25 LEU C 29 5 5 HELIX 22 22 ILE C 38 PHE C 46 1 9 HELIX 23 23 ALA C 48 LYS C 58 1 11 HELIX 24 24 ASN C 63 TYR C 67 5 5 HELIX 25 25 THR C 74 GLY C 83 1 10 HELIX 26 26 ASN C 84 ASP C 93 1 10 HELIX 27 27 THR C 109 LYS C 117 1 9 HELIX 28 28 TRP C 119 ASN C 129 1 11 HELIX 29 29 ILE C 142 GLY C 151 1 10 HELIX 30 30 SER C 152 GLY C 161 1 10 HELIX 31 31 THR C 176 GLU C 184 1 9 HELIX 32 32 HIS C 186 LYS C 196 1 11 HELIX 33 33 LYS C 210 VAL C 214 5 5 HELIX 34 34 ASN C 217 ASN C 226 1 10 HELIX 35 35 ARG D 350 MET D 360 1 11 HELIX 36 36 ASP D 367 ILE D 373 1 7 HELIX 37 37 SER D 379 ARG D 396 1 18 HELIX 38 38 LEU D 403 ALA D 412 1 10 CRYST1 99.599 99.599 73.082 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010040 0.005797 0.000000 0.00000 SCALE2 0.000000 0.011593 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013683 0.00000