data_2E1X # _entry.id 2E1X # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2E1X pdb_00002e1x 10.2210/pdb2e1x/pdb RCSB RCSB026123 ? ? WWPDB D_1000026123 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2E1X _pdbx_database_status.recvd_initial_deposition_date 2006-11-03 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Matsui, T.' 1 'Kodera, Y.' 2 'Miyauchi, E.' 3 'Tanaka, H.' 4 'Endoh, H.' 5 'Komatsu, H.' 6 'Tanaka, T.' 7 'Kohno, T.' 8 'Maeda, T.' 9 # _citation.id primary _citation.title 'Structural role of the secondary active domain of HIV-2 NCp8 in multi-functionality' _citation.journal_abbrev Biochem.Biophys.Res.Commun. _citation.journal_volume 358 _citation.page_first 673 _citation.page_last 678 _citation.year 2007 _citation.journal_id_ASTM BBRCA9 _citation.country US _citation.journal_id_ISSN 0006-291X _citation.journal_id_CSD 0146 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17511966 _citation.pdbx_database_id_DOI 10.1016/j.bbrc.2007.04.141 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Matsui, T.' 1 ? primary 'Kodera, Y.' 2 ? primary 'Miyauchi, E.' 3 ? primary 'Tanaka, H.' 4 ? primary 'Endoh, H.' 5 ? primary 'Komatsu, H.' 6 ? primary 'Tanaka, T.' 7 ? primary 'Kohno, T.' 8 ? primary 'Maeda, T.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Gag-Pol polyprotein (Pr160Gag-Pol)' 3020.586 1 ? ? 'Nucleocapsid protein p7, Residues 23-49' ? 2 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'HIV-2 nucleocapsid protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code RAPRRQGCWKCGKTGHVMAKCPERQAG _entity_poly.pdbx_seq_one_letter_code_can RAPRRQGCWKCGKTGHVMAKCPERQAG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ARG n 1 2 ALA n 1 3 PRO n 1 4 ARG n 1 5 ARG n 1 6 GLN n 1 7 GLY n 1 8 CYS n 1 9 TRP n 1 10 LYS n 1 11 CYS n 1 12 GLY n 1 13 LYS n 1 14 THR n 1 15 GLY n 1 16 HIS n 1 17 VAL n 1 18 MET n 1 19 ALA n 1 20 LYS n 1 21 CYS n 1 22 PRO n 1 23 GLU n 1 24 ARG n 1 25 GLN n 1 26 ALA n 1 27 GLY n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'This peptide has been chemically synthesized. This sequence occurs naturally in HIV-2.' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code POL_HV2G1 _struct_ref.pdbx_db_accession P18042 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code RAPRRQGCWKCGKTGHVMAKCPERQAG _struct_ref.pdbx_align_begin 405 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2E1X _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 27 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P18042 _struct_ref_seq.db_align_beg 405 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 431 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 23 _struct_ref_seq.pdbx_auth_seq_align_end 49 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 DQF-COSY 1 2 1 '2D TOCSY' 1 3 1 '2D NOESY' 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 288 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 5.8 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '5mM Protein; 5.5mM ZnCl2; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model DMX _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 500 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2E1X _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2E1X _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 12 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2E1X _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal 'structure solution' XPLOR-NIH 2.9.9 ? 1 refinement XPLOR-NIH 2.9.9 ? 2 # _exptl.entry_id 2E1X _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2E1X _struct.title 'NMR structure of the HIV-2 nucleocapsid protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2E1X _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'NUCLEOCAPSID PROTEIN, HIV-2, RNA RECOGNITION, ZINC FINGER, VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 8 SG ? ? ? 1_555 A CYS 21 SG ? ? A CYS 30 A CYS 43 1_555 ? ? ? ? ? ? ? 1.966 ? ? metalc1 metalc ? ? A CYS 8 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 30 A ZN 50 1_555 ? ? ? ? ? ? ? 2.298 ? ? metalc2 metalc ? ? A CYS 11 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 33 A ZN 50 1_555 ? ? ? ? ? ? ? 2.303 ? ? metalc3 metalc ? ? A HIS 16 NE2 ? ? ? 1_555 B ZN . ZN ? ? A HIS 38 A ZN 50 1_555 ? ? ? ? ? ? ? 2.001 ? ? metalc4 metalc ? ? A CYS 21 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 43 A ZN 50 1_555 ? ? ? ? ? ? ? 2.302 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id ZN _struct_site.pdbx_auth_seq_id 50 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE ZN A 50' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 8 ? CYS A 30 . ? 1_555 ? 2 AC1 4 CYS A 11 ? CYS A 33 . ? 1_555 ? 3 AC1 4 HIS A 16 ? HIS A 38 . ? 1_555 ? 4 AC1 4 CYS A 21 ? CYS A 43 . ? 1_555 ? # _database_PDB_matrix.entry_id 2E1X _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2E1X _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ARG 1 23 1 ARG ARG A . n A 1 2 ALA 2 24 2 ALA ALA A . n A 1 3 PRO 3 25 3 PRO PRO A . n A 1 4 ARG 4 26 4 ARG ARG A . n A 1 5 ARG 5 27 5 ARG ARG A . n A 1 6 GLN 6 28 6 GLN GLN A . n A 1 7 GLY 7 29 7 GLY GLY A . n A 1 8 CYS 8 30 8 CYS CYS A . n A 1 9 TRP 9 31 9 TRP TRP A . n A 1 10 LYS 10 32 10 LYS LYS A . n A 1 11 CYS 11 33 11 CYS CYS A . n A 1 12 GLY 12 34 12 GLY GLY A . n A 1 13 LYS 13 35 13 LYS LYS A . n A 1 14 THR 14 36 14 THR THR A . n A 1 15 GLY 15 37 15 GLY GLY A . n A 1 16 HIS 16 38 16 HIS HIS A . n A 1 17 VAL 17 39 17 VAL VAL A . n A 1 18 MET 18 40 18 MET MET A . n A 1 19 ALA 19 41 19 ALA ALA A . n A 1 20 LYS 20 42 20 LYS LYS A . n A 1 21 CYS 21 43 21 CYS CYS A . n A 1 22 PRO 22 44 22 PRO PRO A . n A 1 23 GLU 23 45 23 GLU GLU A . n A 1 24 ARG 24 46 24 ARG ARG A . n A 1 25 GLN 25 47 25 GLN GLN A . n A 1 26 ALA 26 48 26 ALA ALA A . n A 1 27 GLY 27 49 27 GLY GLY A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id ZN _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 50 _pdbx_nonpoly_scheme.auth_seq_num 28 _pdbx_nonpoly_scheme.pdb_mon_id ZN _pdbx_nonpoly_scheme.auth_mon_id ZNC _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 8 ? A CYS 30 ? 1_555 ZN ? B ZN . ? A ZN 50 ? 1_555 SG ? A CYS 11 ? A CYS 33 ? 1_555 83.3 ? 2 SG ? A CYS 8 ? A CYS 30 ? 1_555 ZN ? B ZN . ? A ZN 50 ? 1_555 NE2 ? A HIS 16 ? A HIS 38 ? 1_555 122.8 ? 3 SG ? A CYS 11 ? A CYS 33 ? 1_555 ZN ? B ZN . ? A ZN 50 ? 1_555 NE2 ? A HIS 16 ? A HIS 38 ? 1_555 123.7 ? 4 SG ? A CYS 8 ? A CYS 30 ? 1_555 ZN ? B ZN . ? A ZN 50 ? 1_555 SG ? A CYS 21 ? A CYS 43 ? 1_555 50.6 ? 5 SG ? A CYS 11 ? A CYS 33 ? 1_555 ZN ? B ZN . ? A ZN 50 ? 1_555 SG ? A CYS 21 ? A CYS 43 ? 1_555 101.5 ? 6 NE2 ? A HIS 16 ? A HIS 38 ? 1_555 ZN ? B ZN . ? A ZN 50 ? 1_555 SG ? A CYS 21 ? A CYS 43 ? 1_555 134.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-06-05 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_assembly 3 4 'Structure model' pdbx_struct_conn_angle 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.value' 14 4 'Structure model' '_struct_conn.pdbx_dist_value' 15 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 16 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 17 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 18 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 21 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 22 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 23 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 24 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 27 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 28 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 29 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A VAL 39 ? ? H A CYS 43 ? ? 1.55 2 3 SG A CYS 30 ? ? SG A CYS 33 ? ? 1.40 3 3 O A VAL 39 ? ? H A CYS 43 ? ? 1.50 4 5 HB2 A CYS 33 ? ? ZN A ZN 50 ? ? 1.53 5 6 O A VAL 39 ? ? H A CYS 43 ? ? 1.55 6 6 O A ARG 46 ? ? H A ALA 48 ? ? 1.59 7 9 O A GLU 45 ? ? H A ALA 48 ? ? 1.38 8 9 O A VAL 39 ? ? H A CYS 43 ? ? 1.48 9 10 O A VAL 39 ? ? H A CYS 43 ? ? 1.51 10 11 O A VAL 39 ? ? H A CYS 43 ? ? 1.44 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 28 ? ? 49.25 78.66 2 1 LYS A 32 ? ? -149.88 -43.51 3 1 HIS A 38 ? ? 172.97 152.89 4 1 VAL A 39 ? ? -123.29 -164.24 5 1 CYS A 43 ? ? -48.68 167.29 6 1 GLN A 47 ? ? 55.57 -89.05 7 1 ALA A 48 ? ? 62.15 62.93 8 2 GLN A 28 ? ? 55.52 85.06 9 2 CYS A 30 ? ? -54.73 173.40 10 2 LYS A 32 ? ? -146.10 -48.09 11 2 HIS A 38 ? ? 173.49 167.01 12 2 GLU A 45 ? ? -99.70 53.76 13 2 GLN A 47 ? ? -171.90 36.19 14 3 ALA A 24 ? ? 59.05 155.07 15 3 ARG A 26 ? ? 58.14 124.84 16 3 ARG A 27 ? ? 43.90 25.12 17 3 CYS A 30 ? ? -39.99 154.61 18 3 LYS A 32 ? ? -159.99 -37.99 19 3 HIS A 38 ? ? 172.56 163.91 20 3 GLU A 45 ? ? 38.30 34.79 21 4 ALA A 24 ? ? 57.61 108.05 22 4 ARG A 26 ? ? -78.73 -120.09 23 4 GLN A 28 ? ? 39.73 67.94 24 4 LYS A 32 ? ? -157.20 -36.97 25 4 HIS A 38 ? ? 173.83 132.32 26 4 VAL A 39 ? ? -106.11 -152.43 27 4 CYS A 43 ? ? -48.50 174.47 28 4 GLN A 47 ? ? 39.34 41.70 29 5 ARG A 26 ? ? 60.76 -74.75 30 5 ARG A 27 ? ? -47.50 163.25 31 5 LYS A 32 ? ? -140.39 -30.19 32 5 THR A 36 ? ? -107.60 -158.01 33 5 HIS A 38 ? ? 177.72 -178.04 34 5 GLU A 45 ? ? -113.50 68.65 35 5 GLN A 47 ? ? -176.63 57.49 36 6 ARG A 26 ? ? 65.93 154.02 37 6 ARG A 27 ? ? 41.37 -97.15 38 6 GLN A 28 ? ? -173.75 68.57 39 6 LYS A 32 ? ? -124.49 -58.97 40 6 HIS A 38 ? ? 176.68 144.28 41 6 VAL A 39 ? ? -116.92 -167.98 42 6 CYS A 43 ? ? -39.83 144.50 43 6 ARG A 46 ? ? -58.06 -117.55 44 6 GLN A 47 ? ? -67.53 62.36 45 7 ALA A 24 ? ? 49.52 98.37 46 7 ARG A 27 ? ? 51.84 -140.49 47 7 LYS A 32 ? ? -141.31 -35.40 48 7 HIS A 38 ? ? 165.25 164.60 49 7 GLN A 47 ? ? 49.37 70.11 50 8 ALA A 24 ? ? 169.93 -54.57 51 8 ARG A 26 ? ? 64.14 135.47 52 8 ARG A 27 ? ? 47.40 -152.79 53 8 HIS A 38 ? ? 177.10 161.52 54 8 ARG A 46 ? ? -102.91 -158.12 55 8 ALA A 48 ? ? -69.61 60.24 56 9 ARG A 26 ? ? 51.28 -156.93 57 9 ARG A 27 ? ? -43.71 151.53 58 9 LYS A 32 ? ? -153.47 13.26 59 9 HIS A 38 ? ? 167.89 149.33 60 9 VAL A 39 ? ? -122.19 -161.27 61 9 GLU A 45 ? ? -130.76 -42.14 62 9 ARG A 46 ? ? 20.03 49.75 63 9 GLN A 47 ? ? 41.92 29.92 64 10 ALA A 24 ? ? 57.22 171.90 65 10 GLN A 28 ? ? 62.69 61.82 66 10 LYS A 32 ? ? -108.59 -62.79 67 10 HIS A 38 ? ? 175.59 156.13 68 10 VAL A 39 ? ? -126.64 -166.73 69 10 PRO A 44 ? ? -82.39 48.34 70 10 GLU A 45 ? ? 74.36 -3.71 71 10 ARG A 46 ? ? 57.17 149.51 72 10 GLN A 47 ? ? 30.30 59.71 73 10 ALA A 48 ? ? -129.57 -52.85 74 11 ALA A 24 ? ? 40.29 73.03 75 11 ARG A 26 ? ? 50.44 -100.51 76 11 GLN A 28 ? ? 32.73 56.99 77 11 LYS A 32 ? ? -144.37 -37.39 78 11 HIS A 38 ? ? 177.25 153.09 79 11 PRO A 44 ? ? -84.80 41.17 80 11 GLU A 45 ? ? 78.77 -22.45 81 12 ALA A 24 ? ? 177.82 147.71 82 12 PRO A 25 ? ? -76.59 46.03 83 12 ARG A 26 ? ? 59.32 -79.79 84 12 GLN A 28 ? ? 70.14 108.19 85 12 LYS A 32 ? ? -158.11 1.64 86 12 HIS A 38 ? ? 176.26 176.40 87 12 GLN A 47 ? ? -176.13 30.50 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG A 23 ? ? 0.193 'SIDE CHAIN' 2 1 ARG A 26 ? ? 0.118 'SIDE CHAIN' 3 1 ARG A 27 ? ? 0.299 'SIDE CHAIN' 4 1 ARG A 46 ? ? 0.286 'SIDE CHAIN' 5 2 ARG A 23 ? ? 0.204 'SIDE CHAIN' 6 2 ARG A 26 ? ? 0.314 'SIDE CHAIN' 7 2 ARG A 27 ? ? 0.261 'SIDE CHAIN' 8 2 ARG A 46 ? ? 0.304 'SIDE CHAIN' 9 3 ARG A 23 ? ? 0.295 'SIDE CHAIN' 10 3 ARG A 26 ? ? 0.276 'SIDE CHAIN' 11 3 ARG A 27 ? ? 0.240 'SIDE CHAIN' 12 3 ARG A 46 ? ? 0.307 'SIDE CHAIN' 13 4 ARG A 23 ? ? 0.317 'SIDE CHAIN' 14 4 ARG A 26 ? ? 0.309 'SIDE CHAIN' 15 4 ARG A 27 ? ? 0.125 'SIDE CHAIN' 16 4 ARG A 46 ? ? 0.317 'SIDE CHAIN' 17 5 ARG A 23 ? ? 0.282 'SIDE CHAIN' 18 5 ARG A 26 ? ? 0.306 'SIDE CHAIN' 19 5 ARG A 27 ? ? 0.119 'SIDE CHAIN' 20 5 ARG A 46 ? ? 0.203 'SIDE CHAIN' 21 6 ARG A 26 ? ? 0.145 'SIDE CHAIN' 22 6 ARG A 46 ? ? 0.206 'SIDE CHAIN' 23 7 ARG A 23 ? ? 0.299 'SIDE CHAIN' 24 7 ARG A 26 ? ? 0.239 'SIDE CHAIN' 25 7 ARG A 27 ? ? 0.133 'SIDE CHAIN' 26 7 ARG A 46 ? ? 0.285 'SIDE CHAIN' 27 8 ARG A 23 ? ? 0.315 'SIDE CHAIN' 28 8 ARG A 26 ? ? 0.318 'SIDE CHAIN' 29 8 ARG A 46 ? ? 0.315 'SIDE CHAIN' 30 9 ARG A 23 ? ? 0.213 'SIDE CHAIN' 31 9 ARG A 26 ? ? 0.310 'SIDE CHAIN' 32 9 ARG A 27 ? ? 0.155 'SIDE CHAIN' 33 9 ARG A 46 ? ? 0.318 'SIDE CHAIN' 34 10 ARG A 23 ? ? 0.205 'SIDE CHAIN' 35 10 ARG A 26 ? ? 0.168 'SIDE CHAIN' 36 10 ARG A 27 ? ? 0.099 'SIDE CHAIN' 37 10 ARG A 46 ? ? 0.283 'SIDE CHAIN' 38 11 ARG A 26 ? ? 0.316 'SIDE CHAIN' 39 11 ARG A 27 ? ? 0.290 'SIDE CHAIN' 40 11 ARG A 46 ? ? 0.315 'SIDE CHAIN' 41 12 ARG A 23 ? ? 0.258 'SIDE CHAIN' 42 12 ARG A 26 ? ? 0.282 'SIDE CHAIN' 43 12 ARG A 27 ? ? 0.169 'SIDE CHAIN' 44 12 ARG A 46 ? ? 0.119 'SIDE CHAIN' # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'ZINC ION' _pdbx_entity_nonpoly.comp_id ZN #