HEADER TRANSCRIPTION 05-JAN-07 2E70 TITLE SOLUTION STRUCTURE OF THE FIFTH KOW MOTIF OF HUMAN TRANSCRIPTION TITLE 2 ELONGATION FACTOR SPT5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION ELONGATION FACTOR SPT5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KOW MOTIF; COMPND 5 SYNONYM: HSPT5, DRB SENSITIVITY-INDUCING FACTOR LARGE SUBUNIT, DSIF COMPND 6 LARGE SUBUNIT, DSIF P160, TAT-COTRANSACTIVATOR 1 PROTEIN, TAT-CT1 COMPND 7 PROTEIN; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SUPT5H, SPT5, SPT5H; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060130-02; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS KOW MOTIF, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.TANABE,S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2E70 1 REMARK SEQADV REVDAT 2 24-FEB-09 2E70 1 VERSN REVDAT 1 10-JUL-07 2E70 0 JRNL AUTH W.TANABE,S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FIFTH KOW MOTIF OF HUMAN JRNL TITL 2 TRANSCRIPTION ELONGATION FACTOR SPT5 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2E70 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000026304. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.15MM 13C-15N PROTEIN; 20MM D REMARK 210 -TRIS-HCL(PH7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9742, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 694 41.27 -104.21 REMARK 500 1 SER A 755 131.74 -35.46 REMARK 500 2 SER A 689 111.06 -165.69 REMARK 500 2 ARG A 701 106.73 -48.74 REMARK 500 2 TYR A 717 44.38 -96.88 REMARK 500 2 GLU A 729 -73.80 -44.23 REMARK 500 2 LEU A 736 158.40 -49.71 REMARK 500 2 SER A 738 -74.77 -61.67 REMARK 500 3 ARG A 700 43.09 -106.83 REMARK 500 4 ARG A 698 137.53 -38.87 REMARK 500 4 TYR A 717 38.64 -88.31 REMARK 500 4 GLU A 729 -75.04 -41.07 REMARK 500 4 SER A 738 -71.24 -83.98 REMARK 500 5 ARG A 700 149.15 -34.98 REMARK 500 5 ASN A 703 34.51 -88.45 REMARK 500 6 MET A 694 -49.99 -134.20 REMARK 500 6 TYR A 717 42.72 -91.82 REMARK 500 6 SER A 738 -74.07 -82.39 REMARK 500 6 THR A 752 118.25 -39.81 REMARK 500 7 ARG A 696 104.20 -57.28 REMARK 500 7 ASN A 703 34.52 -86.92 REMARK 500 7 GLU A 729 -75.02 -42.89 REMARK 500 7 SER A 738 -72.75 -61.00 REMARK 500 7 SER A 755 142.57 -37.88 REMARK 500 8 ARG A 698 43.54 -101.91 REMARK 500 8 GLU A 729 -74.59 -43.09 REMARK 500 8 THR A 752 121.23 -39.90 REMARK 500 9 GLU A 729 -70.39 -45.96 REMARK 500 9 LEU A 736 160.80 -49.82 REMARK 500 9 SER A 738 -70.27 -53.85 REMARK 500 10 MET A 694 106.75 -56.91 REMARK 500 10 ARG A 698 43.13 -105.92 REMARK 500 10 ASP A 702 95.32 -63.11 REMARK 500 10 GLU A 729 -71.70 -45.07 REMARK 500 10 LEU A 736 157.61 -49.84 REMARK 500 10 SER A 738 -72.95 -71.78 REMARK 500 11 SER A 689 41.08 -102.91 REMARK 500 11 ARG A 696 40.57 -81.68 REMARK 500 11 TYR A 717 38.82 -91.21 REMARK 500 11 ARG A 756 162.50 -49.56 REMARK 500 12 SER A 692 -47.28 -132.33 REMARK 500 12 TYR A 717 45.46 -93.15 REMARK 500 12 GLU A 729 -71.32 -45.35 REMARK 500 12 LEU A 736 158.69 -49.64 REMARK 500 13 SER A 688 105.17 -168.46 REMARK 500 13 ARG A 701 46.37 -106.62 REMARK 500 13 PRO A 716 0.39 -69.74 REMARK 500 13 SER A 738 -72.09 -73.98 REMARK 500 14 SER A 692 -56.07 -130.42 REMARK 500 14 TYR A 717 32.82 -94.36 REMARK 500 REMARK 500 THIS ENTRY HAS 75 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003001095.3 RELATED DB: TARGETDB DBREF 2E70 A 694 757 UNP O00267 SPT5H_HUMAN 694 757 SEQADV 2E70 GLY A 687 UNP O00267 CLONING ARTIFACT SEQADV 2E70 SER A 688 UNP O00267 CLONING ARTIFACT SEQADV 2E70 SER A 689 UNP O00267 CLONING ARTIFACT SEQADV 2E70 GLY A 690 UNP O00267 CLONING ARTIFACT SEQADV 2E70 SER A 691 UNP O00267 CLONING ARTIFACT SEQADV 2E70 SER A 692 UNP O00267 CLONING ARTIFACT SEQADV 2E70 GLY A 693 UNP O00267 CLONING ARTIFACT SEQRES 1 A 71 GLY SER SER GLY SER SER GLY MET SER ARG GLY ARG GLY SEQRES 2 A 71 ARG ARG ASP ASN GLU LEU ILE GLY GLN THR VAL ARG ILE SEQRES 3 A 71 SER GLN GLY PRO TYR LYS GLY TYR ILE GLY VAL VAL LYS SEQRES 4 A 71 ASP ALA THR GLU SER THR ALA ARG VAL GLU LEU HIS SER SEQRES 5 A 71 THR CYS GLN THR ILE SER VAL ASP ARG GLN ARG LEU THR SEQRES 6 A 71 THR VAL GLY SER ARG ARG SHEET 1 A 5 GLN A 741 ASP A 746 0 SHEET 2 A 5 THR A 731 LEU A 736 -1 N VAL A 734 O ILE A 743 SHEET 3 A 5 ILE A 721 THR A 728 -1 N LYS A 725 O ARG A 733 SHEET 4 A 5 THR A 709 ILE A 712 -1 N VAL A 710 O GLY A 722 SHEET 5 A 5 LEU A 750 THR A 752 -1 O THR A 751 N ARG A 711 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1