HEADER TRANSFERASE/RNA 29-JAN-07 2E9Z TITLE FOOT-AND-MOUTH DISEASE VIRUS RNA-POLYMERASE IN COMPLEX WITH A TITLE 2 TEMPLATE- PRIMER RNA, ATP AND UTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-R(*CP*AP*UP*GP*GP*GP*CP*CP*C)-3'; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: RNA TEMPLATE; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-R(*GP*GP*GP*CP*CP*CP*A)-3'; COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: RNA PRIMER; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: RNA-DEPENDENT RNA POLYMERASE; COMPND 13 CHAIN: A; COMPND 14 EC: 2.7.7.48; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: FOOT-AND-MOUTH DISEASE VIRUS C-S8C1; SOURCE 7 ORGANISM_TAXID: 244367; SOURCE 8 STRAIN: C-S8C1; SOURCE 9 GENE: 3D; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS 3D POLYMERASE, FOOT-AND- MOUTH DISEASE VIRUS, RNA-DEPENDENT RNA KEYWDS 2 POLYMERASE, POLYMERASE, TRANSFERASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.FERRER-ORTA,A.ARIAS,R.PEREZ-LUQUE,C.ESCARMIS,E.DOMINGO,N.VERDAGUER REVDAT 3 25-OCT-23 2E9Z 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 2E9Z 1 VERSN REVDAT 1 26-JUN-07 2E9Z 0 JRNL AUTH C.FERRER-ORTA,A.ARIAS,R.PEREZ-LUQUE,C.ESCARMIS,E.DOMINGO, JRNL AUTH 2 N.VERDAGUER JRNL TITL SEQUENTIAL STRUCTURES PROVIDE INSIGHTS INTO THE FIDELITY OF JRNL TITL 2 RNA REPLICATION JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 9463 2007 JRNL REFN ISSN 0027-8424 JRNL PMID 17517631 JRNL DOI 10.1073/PNAS.0700518104 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 10043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 504 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 719 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3330 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.4530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3731 REMARK 3 NUCLEIC ACID ATOMS : 336 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 20 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.37000 REMARK 3 B22 (A**2) : 1.37000 REMARK 3 B33 (A**2) : -2.06000 REMARK 3 B12 (A**2) : 0.69000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.569 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.440 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.716 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.914 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.872 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4232 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5816 ; 1.406 ; 2.063 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 475 ; 5.387 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;40.337 ;23.258 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 629 ;14.927 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;18.041 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 647 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3109 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2495 ; 0.257 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2945 ; 0.318 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 210 ; 0.207 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 77 ; 0.303 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.182 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2402 ; 0.655 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3802 ; 1.200 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2154 ; 1.232 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2014 ; 2.109 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2E9Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000026411. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10043 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.80000 REMARK 200 R SYM (I) : 0.56000 REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1WNE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4000, 0.2M MAGNESIUM ACETATE, REMARK 280 0.1M SODIUM CACODYLATE, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.24133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.12067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.12067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 66.24133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 5 CG OD1 OD2 REMARK 470 ASP A 114 CG OD1 OD2 REMARK 470 PHE A 134 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 282 CG CD OE1 OE2 REMARK 470 LYS A 372 CG CD CE NZ REMARK 470 TYR A 394 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 474 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OP2 C B 910 OE1 GLU A 327 6665 1.56 REMARK 500 OP2 C B 910 CD GLU A 327 6665 1.69 REMARK 500 OG SER A 83 CA PRO A 453 6655 1.72 REMARK 500 OG SER A 87 CA GLU A 451 6655 1.75 REMARK 500 O GLY A 377 NH1 ARG A 417 5665 1.76 REMARK 500 CD GLU A 100 CD GLU A 100 4556 1.77 REMARK 500 OE1 GLU A 100 OE1 GLU A 100 4556 2.00 REMARK 500 C5' C B 910 CG GLU A 327 6665 2.02 REMARK 500 NH2 ARG A 76 ND2 ASN A 464 6655 2.06 REMARK 500 CG GLU A 100 OE2 GLU A 100 4556 2.10 REMARK 500 CD GLU A 100 OE2 GLU A 100 4556 2.13 REMARK 500 CD ARG A 84 OE1 GLU A 451 6655 2.17 REMARK 500 CD GLU A 100 OE1 GLU A 100 4556 2.17 REMARK 500 CZ ARG A 262 CD ARG A 456 6655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 4 -45.28 -140.00 REMARK 500 VAL A 9 -126.90 -137.51 REMARK 500 GLU A 10 -79.13 -117.67 REMARK 500 MET A 16 35.39 -76.83 REMARK 500 HIS A 27 -71.91 -40.52 REMARK 500 GLU A 33 33.56 -76.24 REMARK 500 LYS A 42 73.43 -114.05 REMARK 500 LEU A 46 151.19 -45.79 REMARK 500 GLU A 48 86.60 -69.05 REMARK 500 ASP A 53 -5.25 -57.85 REMARK 500 GLU A 54 -69.45 -95.99 REMARK 500 ILE A 102 -72.51 -96.63 REMARK 500 ASP A 106 97.77 -63.36 REMARK 500 LEU A 131 -42.38 -143.37 REMARK 500 PHE A 134 25.54 -79.50 REMARK 500 GLU A 154 25.67 -147.75 REMARK 500 GLN A 210 -71.00 -53.41 REMARK 500 HIS A 229 -72.99 -59.47 REMARK 500 ASP A 238 79.21 -109.21 REMARK 500 PHE A 261 41.71 -106.77 REMARK 500 ASN A 270 18.67 -67.60 REMARK 500 THR A 277 15.17 -66.84 REMARK 500 GLU A 286 -108.97 59.75 REMARK 500 ASP A 368 66.55 -109.56 REMARK 500 LYS A 372 -0.09 62.25 REMARK 500 LEU A 386 49.14 70.98 REMARK 500 LYS A 387 19.74 57.48 REMARK 500 ALA A 415 160.75 179.78 REMARK 500 CYS A 467 100.11 -170.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1030 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 238 OD1 REMARK 620 2 ASP A 339 OD2 170.8 REMARK 620 3 THR A 384 O 89.5 83.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1031 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 241 O REMARK 620 2 UTP A 993 O3A 106.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1030 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1031 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UTP A 993 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PPV A 665 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1U09 RELATED DB: PDB REMARK 900 FOOT-AND-MOUTH DISEASE VIRUS RNA-DEPENDENT RNA POLYMERASE REMARK 900 RELATED ID: 1WNE RELATED DB: PDB REMARK 900 FOOT-AND-MOUTH DISEASE VIRUS RNA-DEPENDENT RNA-POLYMERASE IN REMARK 900 COMPLEX WITH A TEMPLATE-PRIMER RNA REMARK 900 RELATED ID: 2D7S RELATED DB: PDB REMARK 900 FOOT-AND-MOUTH DISEASE VIRUS RNA-DEPENDENT RNA-POLYMERASE IN REMARK 900 COMPLEX WITH A PROTEIN- PRIMER VPG REMARK 900 RELATED ID: 2F8E RELATED DB: PDB REMARK 900 FOOT-AND-MOUTH DISEASE VIRUS RNA-DEPENDENT RNA-POLYMERASE IN REMARK 900 COMPLEX WITH A PROTEIN- PRIMER VPG URIDYLATED REMARK 900 RELATED ID: 2E9R RELATED DB: PDB REMARK 900 RELATED ID: 2E9T RELATED DB: PDB DBREF 2E9Z A 1 470 UNP Q0QEE1 Q0QEE1_9PICO 1719 2188 DBREF 2E9Z B 902 910 PDB 2E9Z 2E9Z 902 910 DBREF 2E9Z C 915 921 PDB 2E9Z 2E9Z 915 921 SEQADV 2E9Z ALA A 471 UNP Q0QEE1 CLONING ARTIFACT SEQADV 2E9Z ALA A 472 UNP Q0QEE1 CLONING ARTIFACT SEQADV 2E9Z LEU A 473 UNP Q0QEE1 CLONING ARTIFACT SEQADV 2E9Z GLU A 474 UNP Q0QEE1 CLONING ARTIFACT SEQADV 2E9Z HIS A 475 UNP Q0QEE1 CLONING ARTIFACT SEQADV 2E9Z HIS A 476 UNP Q0QEE1 CLONING ARTIFACT SEQRES 1 B 9 C A U G G G C C C SEQRES 1 C 7 G G G C C C A SEQRES 1 A 476 GLY LEU ILE VAL ASP THR ARG ASP VAL GLU GLU ARG VAL SEQRES 2 A 476 HIS VAL MET ARG LYS THR LYS LEU ALA PRO THR VAL ALA SEQRES 3 A 476 HIS GLY VAL PHE ASN PRO GLU PHE GLY PRO ALA ALA LEU SEQRES 4 A 476 SER ASN LYS ASP PRO ARG LEU ASN GLU GLY VAL VAL LEU SEQRES 5 A 476 ASP GLU VAL ILE PHE SER LYS HIS LYS GLY ASP THR LYS SEQRES 6 A 476 MET SER ALA GLU ASP LYS ALA LEU PHE ARG ARG CYS ALA SEQRES 7 A 476 ALA ASP TYR ALA SER ARG LEU HIS SER VAL LEU GLY THR SEQRES 8 A 476 ALA ASN ALA PRO LEU SER ILE TYR GLU ALA ILE LYS GLY SEQRES 9 A 476 VAL ASP GLY LEU ASP ALA MET GLU PRO ASP THR ALA PRO SEQRES 10 A 476 GLY LEU PRO TRP ALA LEU GLN GLY LYS ARG ARG GLY ALA SEQRES 11 A 476 LEU ILE ASP PHE GLU ASN GLY THR VAL GLY PRO GLU VAL SEQRES 12 A 476 GLU ALA ALA LEU LYS LEU MET GLU LYS ARG GLU TYR LYS SEQRES 13 A 476 PHE ALA CYS GLN THR PHE LEU LYS ASP GLU ILE ARG PRO SEQRES 14 A 476 MET GLU LYS VAL ARG ALA GLY LYS THR ARG ILE VAL ASP SEQRES 15 A 476 VAL LEU PRO VAL GLU HIS ILE LEU TYR THR ARG MET MET SEQRES 16 A 476 ILE GLY ARG PHE CYS ALA GLN MET HIS SER ASN ASN GLY SEQRES 17 A 476 PRO GLN ILE GLY SER ALA VAL GLY CYS ASN PRO ASP VAL SEQRES 18 A 476 ASP TRP GLN ARG PHE GLY THR HIS PHE ALA GLN TYR ARG SEQRES 19 A 476 ASN VAL TRP ASP VAL ASP TYR SER ALA PHE ASP ALA ASN SEQRES 20 A 476 HIS CYS SER ASP ALA MET ASN ILE MET PHE GLU GLU VAL SEQRES 21 A 476 PHE ARG THR GLU PHE GLY PHE HIS PRO ASN ALA GLU TRP SEQRES 22 A 476 ILE LEU LYS THR LEU VAL ASN THR GLU HIS ALA TYR GLU SEQRES 23 A 476 ASN LYS ARG ILE THR VAL GLU GLY GLY MET PRO SER GLY SEQRES 24 A 476 CYS SER ALA THR SER ILE ILE ASN THR ILE LEU ASN ASN SEQRES 25 A 476 ILE TYR VAL LEU TYR ALA LEU ARG ARG HIS TYR GLU GLY SEQRES 26 A 476 VAL GLU LEU ASP THR TYR THR MET ILE SER TYR GLY ASP SEQRES 27 A 476 ASP ILE VAL VAL ALA SER ASP TYR ASP LEU ASP PHE GLU SEQRES 28 A 476 ALA LEU LYS PRO HIS PHE LYS SER LEU GLY GLN THR ILE SEQRES 29 A 476 THR PRO ALA ASP LYS SER ASP LYS GLY PHE VAL LEU GLY SEQRES 30 A 476 HIS SER ILE THR ASP VAL THR PHE LEU LYS ARG HIS PHE SEQRES 31 A 476 HIS MET ASP TYR GLY THR GLY PHE TYR LYS PRO VAL MET SEQRES 32 A 476 ALA SER LYS THR LEU GLU ALA ILE LEU SER PHE ALA ARG SEQRES 33 A 476 ARG GLY THR ILE GLN GLU LYS LEU ILE SER VAL ALA GLY SEQRES 34 A 476 LEU ALA VAL HIS SER GLY PRO ASP GLU TYR ARG ARG LEU SEQRES 35 A 476 PHE GLU PRO PHE GLN GLY LEU PHE GLU ILE PRO SER TYR SEQRES 36 A 476 ARG SER LEU TYR LEU ARG TRP VAL ASN ALA VAL CYS GLY SEQRES 37 A 476 ASP ALA ALA ALA LEU GLU HIS HIS HET MG A1030 1 HET MG A1031 1 HET UTP A 993 29 HET PPV A 665 9 HETNAM MG MAGNESIUM ION HETNAM UTP URIDINE 5'-TRIPHOSPHATE HETNAM PPV PYROPHOSPHATE FORMUL 4 MG 2(MG 2+) FORMUL 6 UTP C9 H15 N2 O15 P3 FORMUL 7 PPV H4 O7 P2 FORMUL 8 HOH *20(H2 O) HELIX 1 1 ALA A 26 ASN A 31 1 6 HELIX 2 2 VAL A 51 ILE A 56 1 6 HELIX 3 3 SER A 67 GLY A 90 1 24 HELIX 4 4 TYR A 99 GLY A 104 1 6 HELIX 5 5 ARG A 127 ALA A 130 5 4 HELIX 6 6 GLY A 140 GLU A 151 1 12 HELIX 7 7 MET A 170 ALA A 175 1 6 HELIX 8 8 PRO A 185 SER A 205 1 21 HELIX 9 9 ASN A 218 ALA A 231 1 14 HELIX 10 10 ALA A 243 ASN A 247 5 5 HELIX 11 11 CYS A 249 PHE A 261 1 13 HELIX 12 12 ARG A 262 GLY A 266 5 5 HELIX 13 13 PRO A 269 THR A 277 1 9 HELIX 14 14 ALA A 302 ARG A 321 1 20 HELIX 15 15 ASP A 349 ALA A 352 5 4 HELIX 16 16 LEU A 353 SER A 359 1 7 HELIX 17 17 ASP A 368 LYS A 372 5 5 HELIX 18 18 ALA A 404 LEU A 412 1 9 HELIX 19 19 THR A 419 VAL A 432 1 14 HELIX 20 20 SER A 434 PHE A 443 1 10 HELIX 21 21 GLU A 444 GLN A 447 5 4 HELIX 22 22 SER A 454 CYS A 467 1 14 HELIX 23 23 CYS A 467 LEU A 473 1 7 HELIX 24 24 GLU A 474 HIS A 476 5 3 SHEET 1 A 2 ALA A 22 PRO A 23 0 SHEET 2 A 2 PHE A 414 ALA A 415 -1 O ALA A 415 N ALA A 22 SHEET 1 B 2 PHE A 34 PRO A 36 0 SHEET 2 B 2 ILE A 167 PRO A 169 -1 O ARG A 168 N GLY A 35 SHEET 1 C 2 ILE A 132 ASP A 133 0 SHEET 2 C 2 THR A 138 VAL A 139 -1 O THR A 138 N ASP A 133 SHEET 1 D 4 ILE A 180 VAL A 183 0 SHEET 2 D 4 CYS A 159 LEU A 163 -1 N GLN A 160 O VAL A 183 SHEET 3 D 4 ASN A 280 ALA A 284 1 O GLU A 282 N CYS A 159 SHEET 4 D 4 THR A 291 GLU A 293 -1 O VAL A 292 N THR A 281 SHEET 1 E 3 ASN A 235 TRP A 237 0 SHEET 2 E 3 ASP A 339 SER A 344 -1 O VAL A 342 N TRP A 237 SHEET 3 E 3 THR A 332 TYR A 336 -1 N THR A 332 O ALA A 343 SHEET 1 F 2 VAL A 239 ASP A 240 0 SHEET 2 F 2 THR A 365 PRO A 366 -1 O THR A 365 N ASP A 240 SHEET 1 G 2 HIS A 389 MET A 392 0 SHEET 2 G 2 TYR A 399 VAL A 402 -1 O LYS A 400 N HIS A 391 LINK OD1 ASP A 238 MG MG A1030 1555 1555 2.83 LINK O TYR A 241 MG MG A1031 1555 1555 3.12 LINK OD2 ASP A 339 MG MG A1030 1555 1555 2.94 LINK O THR A 384 MG MG A1030 1555 1555 3.11 LINK O3A UTP A 993 MG MG A1031 1555 1555 2.87 CISPEP 1 LEU A 119 PRO A 120 0 -0.25 SITE 1 AC1 3 ASP A 238 ASP A 339 THR A 384 SITE 1 AC2 2 TYR A 241 UTP A 993 SITE 1 AC3 13 LYS A 164 ARG A 168 ARG A 179 ILE A 180 SITE 2 AC3 13 VAL A 181 SER A 242 ASP A 245 SER A 298 SITE 3 AC3 13 ASP A 338 PPV A 665 MG A1031 A B 903 SITE 4 AC3 13 A C 921 SITE 1 AC4 9 GLU A 166 ARG A 179 LYS A 387 UTP A 993 SITE 2 AC4 9 HOH A1036 HOH A1046 HOH C 527 C C 920 SITE 3 AC4 9 A C 921 CRYST1 94.110 94.110 99.362 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010626 0.006135 0.000000 0.00000 SCALE2 0.000000 0.012270 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010064 0.00000