data_2EBO # _entry.id 2EBO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2EBO pdb_00002ebo 10.2210/pdb2ebo/pdb WWPDB D_1000178021 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2EBO _pdbx_database_status.recvd_initial_deposition_date 1998-12-24 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Malashkevich, V.N.' 1 'Schneider, B.J.' 2 'Mcnally, M.L.' 3 'Milhollen, M.A.' 4 'Pang, J.X.' 5 'Kim, P.S.' 6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Core structure of the envelope glycoprotein GP2 from Ebola virus at 1.9-A resolution.' Proc.Natl.Acad.Sci.USA 96 2662 2667 1999 PNASA6 US 0027-8424 0040 ? 10077567 10.1073/pnas.96.6.2662 1 ;Crystal Structure of the Simian Immunodeficiency Virus (Siv) Gp41 Core: Conserved Helical Interactions Underlie the Broad Inhibitory Activity of Gp41 Peptides ; Proc.Natl.Acad.Sci.USA 95 9134 ? 1998 PNASA6 US 0027-8424 0040 ? ? ? 2 'Core Structure of Gp41 from the HIV Envelope Glycoprotein' 'Cell(Cambridge,Mass.)' 89 263 ? 1997 CELLB5 US 0092-8674 0998 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Malashkevich, V.N.' 1 ? primary 'Schneider, B.J.' 2 ? primary 'McNally, M.L.' 3 ? primary 'Milhollen, M.A.' 4 ? primary 'Pang, J.X.' 5 ? primary 'Kim, P.S.' 6 ? 1 'Malashkevich, V.N.' 7 ? 1 'Chan, D.C.' 8 ? 1 'Chutkowski, C.T.' 9 ? 1 'Kim, P.S.' 10 ? 2 'Chan, D.C.' 11 ? 2 'Fass, D.' 12 ? 2 'Berger, J.M.' 13 ? 2 'Kim, P.S.' 14 ? # _cell.entry_id 2EBO _cell.length_a 75.660 _cell.length_b 75.660 _cell.length_c 67.930 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2EBO _symmetry.space_group_name_H-M 'P 62' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'EBOLA VIRUS ENVELOPE GLYCOPROTEIN' 8544.757 3 ? C609A 'PROTEASE-RESISTANT FRAGMENT' ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 water nat water 18.015 214 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GLRQLANETTQALQLFLRATTELRTFSILNRKAIDFLLQRWGGTCHILGPDCAIEPHDWTKNITDKIDQIIHDF _entity_poly.pdbx_seq_one_letter_code_can GLRQLANETTQALQLFLRATTELRTFSILNRKAIDFLLQRWGGTCHILGPDCAIEPHDWTKNITDKIDQIIHDF _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 LEU n 1 3 ARG n 1 4 GLN n 1 5 LEU n 1 6 ALA n 1 7 ASN n 1 8 GLU n 1 9 THR n 1 10 THR n 1 11 GLN n 1 12 ALA n 1 13 LEU n 1 14 GLN n 1 15 LEU n 1 16 PHE n 1 17 LEU n 1 18 ARG n 1 19 ALA n 1 20 THR n 1 21 THR n 1 22 GLU n 1 23 LEU n 1 24 ARG n 1 25 THR n 1 26 PHE n 1 27 SER n 1 28 ILE n 1 29 LEU n 1 30 ASN n 1 31 ARG n 1 32 LYS n 1 33 ALA n 1 34 ILE n 1 35 ASP n 1 36 PHE n 1 37 LEU n 1 38 LEU n 1 39 GLN n 1 40 ARG n 1 41 TRP n 1 42 GLY n 1 43 GLY n 1 44 THR n 1 45 CYS n 1 46 HIS n 1 47 ILE n 1 48 LEU n 1 49 GLY n 1 50 PRO n 1 51 ASP n 1 52 CYS n 1 53 ALA n 1 54 ILE n 1 55 GLU n 1 56 PRO n 1 57 HIS n 1 58 ASP n 1 59 TRP n 1 60 THR n 1 61 LYS n 1 62 ASN n 1 63 ILE n 1 64 THR n 1 65 ASP n 1 66 LYS n 1 67 ILE n 1 68 ASP n 1 69 GLN n 1 70 ILE n 1 71 ILE n 1 72 HIS n 1 73 ASP n 1 74 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus 'Ebola-like viruses' _entity_src_gen.pdbx_gene_src_gene GP41 _entity_src_gen.gene_src_species 'Zaire ebolavirus' _entity_src_gen.gene_src_strain 'Zaire Mayinga' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Zaire ebolavirus - Mayinga (Zaire, 1976)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 128952 _entity_src_gen.pdbx_gene_src_variant 'ZAIRE ISOLATE' _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location 'VIRAL MEMBRANE' _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene GP41 _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PMMHB _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VGP_EBOZM _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession Q05320 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MGVTGILQLPRDRFKRTSFFLWVIILFQRTFSIPLGVIHNSTLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVP SATKRWGFRSGVPPKVVNYEAGEWAENCYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGDFAFHKEGAFF LYDRLASTVIYRGTTFAEGVVAFLILPQAKKDFFSSHPLREPVNATEDPSSGYYSTTIRYQATGFGTNETEYLFEVDNLT YVQLESRFTPQFLLQLNETIYTSGKRSNTTGKLIWKVNPEIDTTIGEWAFWETKKNLTRKIRSEELSFTVVSNGAKNISG QSPARTSSDPGTNTTTEDHKIMASENSSAMVQVHSQGREAAVSHLTTLATISTSPQSLTTKPGPDNSTHNTPVYKLDISE ATQVEQHHRRTDNDSTASDTPSATTAAGPPKAENTNTSKSTDFLDPATTTSPQNHSETAGNNNTHHQDTGEESASSGKLG LITNTIAGVAGLITGGRRTRREAIVNAQPKCNPNLHYWTTQDEGAAIGLAWIPYFGPAAEGIYIEGLMHNQDGLICGLRQ LANETTQALQLFLRATTELRTFSILNRKAIDFLLQRWGGTCHILGPDCCIEPHDWTKNITDKIDQIIHDFVDKTLPDQGD NDNWWTGWRQWIPAGIGVTGVIIAVIALFCICKFVF ; _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2EBO A 1 ? 74 ? Q05320 557 ? 630 ? 557 630 2 1 2EBO B 1 ? 74 ? Q05320 557 ? 630 ? 557 630 3 1 2EBO C 1 ? 74 ? Q05320 557 ? 630 ? 557 630 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2EBO ALA A 53 ? UNP Q05320 CYS 609 'engineered mutation' 609 1 2 2EBO ALA B 53 ? UNP Q05320 CYS 609 'engineered mutation' 609 2 3 2EBO ALA C 53 ? UNP Q05320 CYS 609 'engineered mutation' 609 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 # _exptl.entry_id 2EBO _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.2 _exptl_crystal.density_percent_sol 44 _exptl_crystal.description 'TRIAL MODEL CONTAINED ONLY 36% OF THE ATOMS OF THE TARGET STRUCTURE.' # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 4.6' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ADSC _diffrn_detector.pdbx_collection_date 1998-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.01 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_wavelength 1.01 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 2EBO _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 25.0 _reflns.d_resolution_high 1.9 _reflns.number_obs 17326 _reflns.number_all ? _reflns.percent_possible_obs 98.9 _reflns.pdbx_Rmerge_I_obs 0.037 _reflns.pdbx_Rsym_value 0.037 _reflns.pdbx_netI_over_sigmaI 18.8 _reflns.B_iso_Wilson_estimate 27.2 _reflns.pdbx_redundancy 4.9 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.9 _reflns_shell.d_res_low 1.92 _reflns_shell.percent_possible_all 99.1 _reflns_shell.Rmerge_I_obs 0.309 _reflns_shell.pdbx_Rsym_value 0.309 _reflns_shell.meanI_over_sigI_obs 3.5 _reflns_shell.pdbx_redundancy 4.0 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2EBO _refine.ls_number_reflns_obs 17303 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1363158.21 _refine.pdbx_data_cutoff_low_absF 0.00 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 98.9 _refine.ls_R_factor_obs 0.205 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.205 _refine.ls_R_factor_R_free 0.27 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.2 _refine.ls_number_reflns_R_free 1758 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 40.9 _refine.aniso_B[1][1] 0.65 _refine.aniso_B[2][2] 0.65 _refine.aniso_B[3][3] -1.30 _refine.aniso_B[1][2] 0.23 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.340 _refine.solvent_model_param_bsol 96.68 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1MOF' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2EBO _refine_analyze.Luzzati_coordinate_error_obs 0.21 _refine_analyze.Luzzati_sigma_a_obs 0.15 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.29 _refine_analyze.Luzzati_sigma_a_free 0.20 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1806 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 214 _refine_hist.number_atoms_total 2021 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 19.8 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.75 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 2.36 2.5 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 3.21 3.0 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.95 3.0 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 4.13 3.5 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.90 _refine_ls_shell.d_res_low 2.02 _refine_ls_shell.number_reflns_R_work 2579 _refine_ls_shell.R_factor_R_work 0.239 _refine_ls_shell.percent_reflns_obs 98.8 _refine_ls_shell.R_factor_R_free 0.319 _refine_ls_shell.R_factor_R_free_error 0.019 _refine_ls_shell.percent_reflns_R_free 9.9 _refine_ls_shell.number_reflns_R_free 283 _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 3 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.details _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] 1 given ? 0.851698 -0.033786 0.522913 -0.475861 -0.467666 0.744878 0.219383 -0.883265 -0.414393 3.00873 33.22936 11.88738 2 given ? 0.851983 -0.476147 0.217648 -0.018012 -0.442191 -0.896740 0.523242 0.760111 -0.385322 10.61292 25.39330 -21.71742 # _struct.entry_id 2EBO _struct.title 'CORE STRUCTURE OF GP2 FROM EBOLA VIRUS' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2EBO _struct_keywords.pdbx_keywords 'ENVELOPE GLYCOPROTEIN' _struct_keywords.text 'ENVELOPE GLYCOPROTEIN, FILOVIRUS, EBOLA VIRUS, GP2, COAT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 4 ? TRP A 41 ? GLN A 560 TRP A 597 1 ? 38 HELX_P HELX_P2 2 THR A 44 ? ALA A 53 ? THR A 600 ALA A 609 1 ? 10 HELX_P HELX_P3 3 THR A 60 ? HIS A 72 ? THR A 616 HIS A 628 1 ? 13 HELX_P HELX_P4 4 LEU B 5 ? LEU B 37 ? LEU B 561 LEU B 593 1 ? 33 HELX_P HELX_P5 5 GLN B 39 ? TRP B 41 ? GLN B 595 TRP B 597 5 ? 3 HELX_P HELX_P6 6 THR B 44 ? LEU B 48 ? THR B 600 LEU B 604 5 ? 5 HELX_P HELX_P7 7 THR B 60 ? ILE B 71 ? THR B 616 ILE B 627 1 ? 12 HELX_P HELX_P8 8 LEU C 5 ? TRP C 41 ? LEU C 561 TRP C 597 1 ? 37 HELX_P HELX_P9 9 THR C 44 ? ALA C 53 ? THR C 600 ALA C 609 1 ? 10 HELX_P HELX_P10 10 THR C 60 ? HIS C 72 ? THR C 616 HIS C 628 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 45 SG ? ? ? 1_555 A CYS 52 SG ? ? A CYS 601 A CYS 608 1_555 ? ? ? ? ? ? ? 2.045 ? ? disulf2 disulf ? ? B CYS 45 SG ? ? ? 1_555 B CYS 52 SG ? ? B CYS 601 B CYS 608 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf3 disulf ? ? C CYS 45 SG ? ? ? 1_555 C CYS 52 SG ? ? C CYS 601 C CYS 608 1_555 ? ? ? ? ? ? ? 2.034 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details CL Unknown ? ? ? ? 3 'CHLORIDE-BINDING SITE' AC1 Software A CL 1 ? 5 'BINDING SITE FOR RESIDUE CL A 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 CL 3 ASN A 30 ? ASN A 586 . ? 1_555 ? 2 CL 3 ASN B 30 ? ASN B 586 . ? 1_555 ? 3 CL 3 ASN C 30 ? ASN C 586 . ? 1_555 ? 4 AC1 5 SER A 27 ? SER A 583 . ? 1_555 ? 5 AC1 5 ASN A 30 ? ASN A 586 . ? 1_555 ? 6 AC1 5 SER B 27 ? SER B 583 . ? 1_555 ? 7 AC1 5 ASN B 30 ? ASN B 586 . ? 1_555 ? 8 AC1 5 ASN C 30 ? ASN C 586 . ? 1_555 ? # _database_PDB_matrix.entry_id 2EBO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2EBO _atom_sites.fract_transf_matrix[1][1] 0.013217 _atom_sites.fract_transf_matrix[1][2] 0.007631 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015262 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014721 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 557 557 GLY GLY A . n A 1 2 LEU 2 558 558 LEU LEU A . n A 1 3 ARG 3 559 559 ARG ARG A . n A 1 4 GLN 4 560 560 GLN GLN A . n A 1 5 LEU 5 561 561 LEU LEU A . n A 1 6 ALA 6 562 562 ALA ALA A . n A 1 7 ASN 7 563 563 ASN ASN A . n A 1 8 GLU 8 564 564 GLU GLU A . n A 1 9 THR 9 565 565 THR THR A . n A 1 10 THR 10 566 566 THR THR A . n A 1 11 GLN 11 567 567 GLN GLN A . n A 1 12 ALA 12 568 568 ALA ALA A . n A 1 13 LEU 13 569 569 LEU LEU A . n A 1 14 GLN 14 570 570 GLN GLN A . n A 1 15 LEU 15 571 571 LEU LEU A . n A 1 16 PHE 16 572 572 PHE PHE A . n A 1 17 LEU 17 573 573 LEU LEU A . n A 1 18 ARG 18 574 574 ARG ARG A . n A 1 19 ALA 19 575 575 ALA ALA A . n A 1 20 THR 20 576 576 THR THR A . n A 1 21 THR 21 577 577 THR THR A . n A 1 22 GLU 22 578 578 GLU GLU A . n A 1 23 LEU 23 579 579 LEU LEU A . n A 1 24 ARG 24 580 580 ARG ARG A . n A 1 25 THR 25 581 581 THR THR A . n A 1 26 PHE 26 582 582 PHE PHE A . n A 1 27 SER 27 583 583 SER SER A . n A 1 28 ILE 28 584 584 ILE ILE A . n A 1 29 LEU 29 585 585 LEU LEU A . n A 1 30 ASN 30 586 586 ASN ASN A . n A 1 31 ARG 31 587 587 ARG ARG A . n A 1 32 LYS 32 588 588 LYS LYS A . n A 1 33 ALA 33 589 589 ALA ALA A . n A 1 34 ILE 34 590 590 ILE ILE A . n A 1 35 ASP 35 591 591 ASP ASP A . n A 1 36 PHE 36 592 592 PHE PHE A . n A 1 37 LEU 37 593 593 LEU LEU A . n A 1 38 LEU 38 594 594 LEU LEU A . n A 1 39 GLN 39 595 595 GLN GLN A . n A 1 40 ARG 40 596 596 ARG ARG A . n A 1 41 TRP 41 597 597 TRP TRP A . n A 1 42 GLY 42 598 598 GLY GLY A . n A 1 43 GLY 43 599 599 GLY GLY A . n A 1 44 THR 44 600 600 THR THR A . n A 1 45 CYS 45 601 601 CYS CYS A . n A 1 46 HIS 46 602 602 HIS HIS A . n A 1 47 ILE 47 603 603 ILE ILE A . n A 1 48 LEU 48 604 604 LEU LEU A . n A 1 49 GLY 49 605 605 GLY GLY A . n A 1 50 PRO 50 606 606 PRO PRO A . n A 1 51 ASP 51 607 607 ASP ASP A . n A 1 52 CYS 52 608 608 CYS CYS A . n A 1 53 ALA 53 609 609 ALA ALA A . n A 1 54 ILE 54 610 610 ILE ILE A . n A 1 55 GLU 55 611 611 GLU GLU A . n A 1 56 PRO 56 612 612 PRO PRO A . n A 1 57 HIS 57 613 613 HIS HIS A . n A 1 58 ASP 58 614 614 ASP ASP A . n A 1 59 TRP 59 615 615 TRP TRP A . n A 1 60 THR 60 616 616 THR THR A . n A 1 61 LYS 61 617 617 LYS LYS A . n A 1 62 ASN 62 618 618 ASN ASN A . n A 1 63 ILE 63 619 619 ILE ILE A . n A 1 64 THR 64 620 620 THR THR A . n A 1 65 ASP 65 621 621 ASP ASP A . n A 1 66 LYS 66 622 622 LYS LYS A . n A 1 67 ILE 67 623 623 ILE ILE A . n A 1 68 ASP 68 624 624 ASP ASP A . n A 1 69 GLN 69 625 625 GLN GLN A . n A 1 70 ILE 70 626 626 ILE ILE A . n A 1 71 ILE 71 627 627 ILE ILE A . n A 1 72 HIS 72 628 628 HIS HIS A . n A 1 73 ASP 73 629 629 ASP ASP A . n A 1 74 PHE 74 630 630 PHE PHE A . n B 1 1 GLY 1 557 557 GLY GLY B . n B 1 2 LEU 2 558 558 LEU LEU B . n B 1 3 ARG 3 559 559 ARG ARG B . n B 1 4 GLN 4 560 560 GLN GLN B . n B 1 5 LEU 5 561 561 LEU LEU B . n B 1 6 ALA 6 562 562 ALA ALA B . n B 1 7 ASN 7 563 563 ASN ASN B . n B 1 8 GLU 8 564 564 GLU GLU B . n B 1 9 THR 9 565 565 THR THR B . n B 1 10 THR 10 566 566 THR THR B . n B 1 11 GLN 11 567 567 GLN GLN B . n B 1 12 ALA 12 568 568 ALA ALA B . n B 1 13 LEU 13 569 569 LEU LEU B . n B 1 14 GLN 14 570 570 GLN GLN B . n B 1 15 LEU 15 571 571 LEU LEU B . n B 1 16 PHE 16 572 572 PHE PHE B . n B 1 17 LEU 17 573 573 LEU LEU B . n B 1 18 ARG 18 574 574 ARG ARG B . n B 1 19 ALA 19 575 575 ALA ALA B . n B 1 20 THR 20 576 576 THR THR B . n B 1 21 THR 21 577 577 THR THR B . n B 1 22 GLU 22 578 578 GLU GLU B . n B 1 23 LEU 23 579 579 LEU LEU B . n B 1 24 ARG 24 580 580 ARG ARG B . n B 1 25 THR 25 581 581 THR THR B . n B 1 26 PHE 26 582 582 PHE PHE B . n B 1 27 SER 27 583 583 SER SER B . n B 1 28 ILE 28 584 584 ILE ILE B . n B 1 29 LEU 29 585 585 LEU LEU B . n B 1 30 ASN 30 586 586 ASN ASN B . n B 1 31 ARG 31 587 587 ARG ARG B . n B 1 32 LYS 32 588 588 LYS LYS B . n B 1 33 ALA 33 589 589 ALA ALA B . n B 1 34 ILE 34 590 590 ILE ILE B . n B 1 35 ASP 35 591 591 ASP ASP B . n B 1 36 PHE 36 592 592 PHE PHE B . n B 1 37 LEU 37 593 593 LEU LEU B . n B 1 38 LEU 38 594 594 LEU LEU B . n B 1 39 GLN 39 595 595 GLN GLN B . n B 1 40 ARG 40 596 596 ARG ARG B . n B 1 41 TRP 41 597 597 TRP TRP B . n B 1 42 GLY 42 598 598 GLY GLY B . n B 1 43 GLY 43 599 599 GLY GLY B . n B 1 44 THR 44 600 600 THR THR B . n B 1 45 CYS 45 601 601 CYS CYS B . n B 1 46 HIS 46 602 602 HIS HIS B . n B 1 47 ILE 47 603 603 ILE ILE B . n B 1 48 LEU 48 604 604 LEU LEU B . n B 1 49 GLY 49 605 605 GLY GLY B . n B 1 50 PRO 50 606 606 PRO PRO B . n B 1 51 ASP 51 607 607 ASP ASP B . n B 1 52 CYS 52 608 608 CYS CYS B . n B 1 53 ALA 53 609 609 ALA ALA B . n B 1 54 ILE 54 610 610 ILE ILE B . n B 1 55 GLU 55 611 611 GLU GLU B . n B 1 56 PRO 56 612 612 PRO PRO B . n B 1 57 HIS 57 613 613 HIS HIS B . n B 1 58 ASP 58 614 614 ASP ASP B . n B 1 59 TRP 59 615 615 TRP TRP B . n B 1 60 THR 60 616 616 THR THR B . n B 1 61 LYS 61 617 617 LYS LYS B . n B 1 62 ASN 62 618 618 ASN ASN B . n B 1 63 ILE 63 619 619 ILE ILE B . n B 1 64 THR 64 620 620 THR THR B . n B 1 65 ASP 65 621 621 ASP ASP B . n B 1 66 LYS 66 622 622 LYS LYS B . n B 1 67 ILE 67 623 623 ILE ILE B . n B 1 68 ASP 68 624 624 ASP ASP B . n B 1 69 GLN 69 625 625 GLN GLN B . n B 1 70 ILE 70 626 626 ILE ILE B . n B 1 71 ILE 71 627 627 ILE ILE B . n B 1 72 HIS 72 628 628 HIS HIS B . n B 1 73 ASP 73 629 629 ASP ASP B . n B 1 74 PHE 74 630 630 PHE PHE B . n C 1 1 GLY 1 557 557 GLY GLY C . n C 1 2 LEU 2 558 558 LEU LEU C . n C 1 3 ARG 3 559 559 ARG ARG C . n C 1 4 GLN 4 560 560 GLN GLN C . n C 1 5 LEU 5 561 561 LEU LEU C . n C 1 6 ALA 6 562 562 ALA ALA C . n C 1 7 ASN 7 563 563 ASN ASN C . n C 1 8 GLU 8 564 564 GLU GLU C . n C 1 9 THR 9 565 565 THR THR C . n C 1 10 THR 10 566 566 THR THR C . n C 1 11 GLN 11 567 567 GLN GLN C . n C 1 12 ALA 12 568 568 ALA ALA C . n C 1 13 LEU 13 569 569 LEU LEU C . n C 1 14 GLN 14 570 570 GLN GLN C . n C 1 15 LEU 15 571 571 LEU LEU C . n C 1 16 PHE 16 572 572 PHE PHE C . n C 1 17 LEU 17 573 573 LEU LEU C . n C 1 18 ARG 18 574 574 ARG ARG C . n C 1 19 ALA 19 575 575 ALA ALA C . n C 1 20 THR 20 576 576 THR THR C . n C 1 21 THR 21 577 577 THR THR C . n C 1 22 GLU 22 578 578 GLU GLU C . n C 1 23 LEU 23 579 579 LEU LEU C . n C 1 24 ARG 24 580 580 ARG ARG C . n C 1 25 THR 25 581 581 THR THR C . n C 1 26 PHE 26 582 582 PHE PHE C . n C 1 27 SER 27 583 583 SER SER C . n C 1 28 ILE 28 584 584 ILE ILE C . n C 1 29 LEU 29 585 585 LEU LEU C . n C 1 30 ASN 30 586 586 ASN ASN C . n C 1 31 ARG 31 587 587 ARG ARG C . n C 1 32 LYS 32 588 588 LYS LYS C . n C 1 33 ALA 33 589 589 ALA ALA C . n C 1 34 ILE 34 590 590 ILE ILE C . n C 1 35 ASP 35 591 591 ASP ASP C . n C 1 36 PHE 36 592 592 PHE PHE C . n C 1 37 LEU 37 593 593 LEU LEU C . n C 1 38 LEU 38 594 594 LEU LEU C . n C 1 39 GLN 39 595 595 GLN GLN C . n C 1 40 ARG 40 596 596 ARG ARG C . n C 1 41 TRP 41 597 597 TRP TRP C . n C 1 42 GLY 42 598 598 GLY GLY C . n C 1 43 GLY 43 599 599 GLY GLY C . n C 1 44 THR 44 600 600 THR THR C . n C 1 45 CYS 45 601 601 CYS CYS C . n C 1 46 HIS 46 602 602 HIS HIS C . n C 1 47 ILE 47 603 603 ILE ILE C . n C 1 48 LEU 48 604 604 LEU LEU C . n C 1 49 GLY 49 605 605 GLY GLY C . n C 1 50 PRO 50 606 606 PRO PRO C . n C 1 51 ASP 51 607 607 ASP ASP C . n C 1 52 CYS 52 608 608 CYS CYS C . n C 1 53 ALA 53 609 609 ALA ALA C . n C 1 54 ILE 54 610 610 ILE ILE C . n C 1 55 GLU 55 611 611 GLU GLU C . n C 1 56 PRO 56 612 612 PRO PRO C . n C 1 57 HIS 57 613 613 HIS HIS C . n C 1 58 ASP 58 614 614 ASP ASP C . n C 1 59 TRP 59 615 615 TRP TRP C . n C 1 60 THR 60 616 616 THR THR C . n C 1 61 LYS 61 617 617 LYS LYS C . n C 1 62 ASN 62 618 618 ASN ASN C . n C 1 63 ILE 63 619 619 ILE ILE C . n C 1 64 THR 64 620 620 THR THR C . n C 1 65 ASP 65 621 621 ASP ASP C . n C 1 66 LYS 66 622 622 LYS LYS C . n C 1 67 ILE 67 623 623 ILE ILE C . n C 1 68 ASP 68 624 624 ASP ASP C . n C 1 69 GLN 69 625 625 GLN GLN C . n C 1 70 ILE 70 626 626 ILE ILE C . n C 1 71 ILE 71 627 627 ILE ILE C . n C 1 72 HIS 72 628 628 HIS HIS C . n C 1 73 ASP 73 629 629 ASP ASP C . n C 1 74 PHE 74 630 630 PHE PHE C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CL 1 1 1 CL CL A . E 3 HOH 1 2 2 HOH HOH A . E 3 HOH 2 3 3 HOH HOH A . E 3 HOH 3 5 5 HOH HOH A . E 3 HOH 4 6 6 HOH HOH A . E 3 HOH 5 9 9 HOH HOH A . E 3 HOH 6 11 11 HOH HOH A . E 3 HOH 7 13 13 HOH HOH A . E 3 HOH 8 14 14 HOH HOH A . E 3 HOH 9 15 15 HOH HOH A . E 3 HOH 10 16 16 HOH HOH A . E 3 HOH 11 18 18 HOH HOH A . E 3 HOH 12 23 23 HOH HOH A . E 3 HOH 13 28 28 HOH HOH A . E 3 HOH 14 29 29 HOH HOH A . E 3 HOH 15 32 32 HOH HOH A . E 3 HOH 16 35 35 HOH HOH A . E 3 HOH 17 37 37 HOH HOH A . E 3 HOH 18 38 38 HOH HOH A . E 3 HOH 19 40 40 HOH HOH A . E 3 HOH 20 43 43 HOH HOH A . E 3 HOH 21 44 44 HOH HOH A . E 3 HOH 22 48 48 HOH HOH A . E 3 HOH 23 50 50 HOH HOH A . E 3 HOH 24 51 51 HOH HOH A . E 3 HOH 25 52 52 HOH HOH A . E 3 HOH 26 58 58 HOH HOH A . E 3 HOH 27 62 62 HOH HOH A . E 3 HOH 28 67 67 HOH HOH A . E 3 HOH 29 72 72 HOH HOH A . E 3 HOH 30 73 73 HOH HOH A . E 3 HOH 31 76 76 HOH HOH A . E 3 HOH 32 78 78 HOH HOH A . E 3 HOH 33 79 79 HOH HOH A . E 3 HOH 34 80 80 HOH HOH A . E 3 HOH 35 81 81 HOH HOH A . E 3 HOH 36 83 83 HOH HOH A . E 3 HOH 37 84 84 HOH HOH A . E 3 HOH 38 85 85 HOH HOH A . E 3 HOH 39 86 86 HOH HOH A . E 3 HOH 40 87 87 HOH HOH A . E 3 HOH 41 88 88 HOH HOH A . E 3 HOH 42 89 89 HOH HOH A . E 3 HOH 43 90 90 HOH HOH A . E 3 HOH 44 91 91 HOH HOH A . E 3 HOH 45 92 92 HOH HOH A . E 3 HOH 46 93 93 HOH HOH A . E 3 HOH 47 94 94 HOH HOH A . E 3 HOH 48 97 97 HOH HOH A . E 3 HOH 49 98 98 HOH HOH A . E 3 HOH 50 99 99 HOH HOH A . E 3 HOH 51 100 100 HOH HOH A . E 3 HOH 52 101 101 HOH HOH A . E 3 HOH 53 102 102 HOH HOH A . E 3 HOH 54 103 103 HOH HOH A . E 3 HOH 55 104 104 HOH HOH A . E 3 HOH 56 105 105 HOH HOH A . E 3 HOH 57 106 106 HOH HOH A . E 3 HOH 58 108 108 HOH HOH A . E 3 HOH 59 109 109 HOH HOH A . E 3 HOH 60 110 110 HOH HOH A . E 3 HOH 61 111 111 HOH HOH A . E 3 HOH 62 112 112 HOH HOH A . E 3 HOH 63 113 113 HOH HOH A . E 3 HOH 64 114 114 HOH HOH A . E 3 HOH 65 115 115 HOH HOH A . E 3 HOH 66 116 116 HOH HOH A . E 3 HOH 67 117 117 HOH HOH A . E 3 HOH 68 118 118 HOH HOH A . E 3 HOH 69 119 119 HOH HOH A . E 3 HOH 70 120 120 HOH HOH A . E 3 HOH 71 121 121 HOH HOH A . E 3 HOH 72 122 122 HOH HOH A . E 3 HOH 73 124 124 HOH HOH A . E 3 HOH 74 125 125 HOH HOH A . E 3 HOH 75 128 128 HOH HOH A . E 3 HOH 76 132 132 HOH HOH A . E 3 HOH 77 134 134 HOH HOH A . E 3 HOH 78 144 144 HOH HOH A . E 3 HOH 79 212 212 HOH HOH A . E 3 HOH 80 214 214 HOH HOH A . E 3 HOH 81 215 215 HOH HOH A . E 3 HOH 82 216 216 HOH HOH A . E 3 HOH 83 217 217 HOH HOH A . E 3 HOH 84 218 218 HOH HOH A . E 3 HOH 85 219 219 HOH HOH A . F 3 HOH 1 4 4 HOH HOH B . F 3 HOH 2 12 12 HOH HOH B . F 3 HOH 3 21 21 HOH HOH B . F 3 HOH 4 22 22 HOH HOH B . F 3 HOH 5 25 25 HOH HOH B . F 3 HOH 6 26 26 HOH HOH B . F 3 HOH 7 31 31 HOH HOH B . F 3 HOH 8 34 34 HOH HOH B . F 3 HOH 9 36 36 HOH HOH B . F 3 HOH 10 39 39 HOH HOH B . F 3 HOH 11 55 55 HOH HOH B . F 3 HOH 12 56 56 HOH HOH B . F 3 HOH 13 59 59 HOH HOH B . F 3 HOH 14 61 61 HOH HOH B . F 3 HOH 15 63 63 HOH HOH B . F 3 HOH 16 65 65 HOH HOH B . F 3 HOH 17 71 71 HOH HOH B . F 3 HOH 18 74 74 HOH HOH B . F 3 HOH 19 75 75 HOH HOH B . F 3 HOH 20 107 107 HOH HOH B . F 3 HOH 21 126 126 HOH HOH B . F 3 HOH 22 127 127 HOH HOH B . F 3 HOH 23 129 129 HOH HOH B . F 3 HOH 24 130 130 HOH HOH B . F 3 HOH 25 131 131 HOH HOH B . F 3 HOH 26 133 133 HOH HOH B . F 3 HOH 27 136 136 HOH HOH B . F 3 HOH 28 137 137 HOH HOH B . F 3 HOH 29 138 138 HOH HOH B . F 3 HOH 30 139 139 HOH HOH B . F 3 HOH 31 140 140 HOH HOH B . F 3 HOH 32 141 141 HOH HOH B . F 3 HOH 33 142 142 HOH HOH B . F 3 HOH 34 143 143 HOH HOH B . F 3 HOH 35 145 145 HOH HOH B . F 3 HOH 36 146 146 HOH HOH B . F 3 HOH 37 147 147 HOH HOH B . F 3 HOH 38 148 148 HOH HOH B . F 3 HOH 39 149 149 HOH HOH B . F 3 HOH 40 150 150 HOH HOH B . F 3 HOH 41 151 151 HOH HOH B . F 3 HOH 42 152 152 HOH HOH B . F 3 HOH 43 153 153 HOH HOH B . F 3 HOH 44 154 154 HOH HOH B . F 3 HOH 45 155 155 HOH HOH B . F 3 HOH 46 156 156 HOH HOH B . F 3 HOH 47 158 158 HOH HOH B . F 3 HOH 48 159 159 HOH HOH B . F 3 HOH 49 160 160 HOH HOH B . F 3 HOH 50 161 161 HOH HOH B . F 3 HOH 51 167 167 HOH HOH B . F 3 HOH 52 168 168 HOH HOH B . F 3 HOH 53 169 169 HOH HOH B . F 3 HOH 54 170 170 HOH HOH B . F 3 HOH 55 171 171 HOH HOH B . F 3 HOH 56 172 172 HOH HOH B . F 3 HOH 57 173 173 HOH HOH B . F 3 HOH 58 174 174 HOH HOH B . F 3 HOH 59 176 176 HOH HOH B . F 3 HOH 60 177 177 HOH HOH B . F 3 HOH 61 178 178 HOH HOH B . F 3 HOH 62 179 179 HOH HOH B . F 3 HOH 63 180 180 HOH HOH B . F 3 HOH 64 181 181 HOH HOH B . F 3 HOH 65 182 182 HOH HOH B . F 3 HOH 66 183 183 HOH HOH B . F 3 HOH 67 184 184 HOH HOH B . F 3 HOH 68 185 185 HOH HOH B . F 3 HOH 69 190 190 HOH HOH B . F 3 HOH 70 191 191 HOH HOH B . F 3 HOH 71 213 213 HOH HOH B . F 3 HOH 72 220 220 HOH HOH B . F 3 HOH 73 221 221 HOH HOH B . F 3 HOH 74 222 222 HOH HOH B . G 3 HOH 1 7 7 HOH HOH C . G 3 HOH 2 8 8 HOH HOH C . G 3 HOH 3 10 10 HOH HOH C . G 3 HOH 4 17 17 HOH HOH C . G 3 HOH 5 19 19 HOH HOH C . G 3 HOH 6 20 20 HOH HOH C . G 3 HOH 7 24 24 HOH HOH C . G 3 HOH 8 27 27 HOH HOH C . G 3 HOH 9 30 30 HOH HOH C . G 3 HOH 10 33 33 HOH HOH C . G 3 HOH 11 41 41 HOH HOH C . G 3 HOH 12 42 42 HOH HOH C . G 3 HOH 13 45 45 HOH HOH C . G 3 HOH 14 46 46 HOH HOH C . G 3 HOH 15 47 47 HOH HOH C . G 3 HOH 16 49 49 HOH HOH C . G 3 HOH 17 53 53 HOH HOH C . G 3 HOH 18 54 54 HOH HOH C . G 3 HOH 19 57 57 HOH HOH C . G 3 HOH 20 64 64 HOH HOH C . G 3 HOH 21 66 66 HOH HOH C . G 3 HOH 22 68 68 HOH HOH C . G 3 HOH 23 69 69 HOH HOH C . G 3 HOH 24 70 70 HOH HOH C . G 3 HOH 25 82 82 HOH HOH C . G 3 HOH 26 95 95 HOH HOH C . G 3 HOH 27 96 96 HOH HOH C . G 3 HOH 28 157 157 HOH HOH C . G 3 HOH 29 162 162 HOH HOH C . G 3 HOH 30 163 163 HOH HOH C . G 3 HOH 31 164 164 HOH HOH C . G 3 HOH 32 165 165 HOH HOH C . G 3 HOH 33 166 166 HOH HOH C . G 3 HOH 34 175 175 HOH HOH C . G 3 HOH 35 186 186 HOH HOH C . G 3 HOH 36 187 187 HOH HOH C . G 3 HOH 37 188 188 HOH HOH C . G 3 HOH 38 189 189 HOH HOH C . G 3 HOH 39 192 192 HOH HOH C . G 3 HOH 40 193 193 HOH HOH C . G 3 HOH 41 194 194 HOH HOH C . G 3 HOH 42 198 198 HOH HOH C . G 3 HOH 43 199 199 HOH HOH C . G 3 HOH 44 200 200 HOH HOH C . G 3 HOH 45 201 201 HOH HOH C . G 3 HOH 46 202 202 HOH HOH C . G 3 HOH 47 203 203 HOH HOH C . G 3 HOH 48 204 204 HOH HOH C . G 3 HOH 49 205 205 HOH HOH C . G 3 HOH 50 206 206 HOH HOH C . G 3 HOH 51 207 207 HOH HOH C . G 3 HOH 52 208 208 HOH HOH C . G 3 HOH 53 209 209 HOH HOH C . G 3 HOH 54 210 210 HOH HOH C . G 3 HOH 55 223 223 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 8070 ? 1 MORE -87 ? 1 'SSA (A^2)' 11290 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-05-18 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-03-14 5 'Structure model' 1 4 2023-08-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Database references' 5 5 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' struct_ref_seq_dif 2 5 'Structure model' database_2 3 5 'Structure model' pdbx_initial_refinement_model 4 5 'Structure model' struct_ref_seq_dif 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_struct_ref_seq_dif.details' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_struct_ref_seq_dif.details' 5 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 CNS refinement 0.5 ? 3 CNS phasing 0.5 ? 4 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 88 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 88 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_665 _pdbx_validate_symm_contact.dist 1.28 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 558 ? ? -173.25 119.69 2 1 ARG B 559 ? ? -52.89 98.91 3 1 PRO B 606 ? ? -68.90 22.35 4 1 ASP B 607 ? ? -146.35 -29.46 5 1 LEU C 558 ? ? 54.49 87.50 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1MOF _pdbx_initial_refinement_model.details 'PDB ENTRY 1MOF' #