HEADER DNA BINDING PROTEIN 13-FEB-07 2ECC TITLE SOLUTION STRUCTURE OF THE SECOND HOMEOBOX DOMAIN OF HUMAN HOMEODOMAIN TITLE 2 LEUCINE ZIPPER-ENCODING GENE (HOMEZ) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMEOBOX AND LEUCINE ZIPPER PROTEIN HOMEZ; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HOMEOBOX DOMAIN; COMPND 5 SYNONYM: HOMEODOMAIN LEUCINE ZIPPER- CONTAINING FACTOR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HOMEZ, KIAA1443; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040126-87; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS HOMEOBOX DOMAIN, TRANSCRIPTION FACTOR, HOMEZ, LEUCINE ZIPPER- KEYWDS 2 CONTAINING FACTOR, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 3 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.OHNISHI,Y.O.KAMATARI,N.TOCHIO,N.NAMEKI,K.MIYAMOTO,H.LI,N.KOBAYASHI, AUTHOR 2 S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 3 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2ECC 1 REMARK SEQADV REVDAT 2 24-FEB-09 2ECC 1 VERSN REVDAT 1 27-FEB-07 2ECC 0 SPRSDE 27-FEB-07 2ECC 1WJH JRNL AUTH S.OHNISHI,Y.O.KAMATARI,N.TOCHIO,N.KOBAYASHI,S.KOSHIBA, JRNL AUTH 2 M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SECOND HOMEOBOX DOMAIN OF HUMAN JRNL TITL 2 HOMEODOMAIN LEUCINE ZIPPER-ENCODING GENE (HOMEZ) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ECC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000026492. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.14MM HOMEOBOX DOMAIN U-15N, REMARK 210 13C; 20MM D-TRIS-HCL; 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.8998, CYANA 2.0.17 REMARK 210 METHOD USED : TORTION ANGLE DYNAMICS, REMARK 210 RESTRAINED SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 170.57 -47.11 REMARK 500 1 CYS A 25 105.95 -160.40 REMARK 500 1 ARG A 67 42.05 36.03 REMARK 500 1 ASN A 69 160.37 -46.76 REMARK 500 2 SER A 75 50.45 34.75 REMARK 500 3 LEU A 63 109.27 -47.54 REMARK 500 3 ASN A 69 115.62 -35.31 REMARK 500 4 SER A 6 107.26 -52.66 REMARK 500 4 LEU A 63 107.18 -44.78 REMARK 500 4 ARG A 67 174.88 -52.96 REMARK 500 4 ALA A 70 78.22 -66.52 REMARK 500 5 ASN A 69 42.45 -88.22 REMARK 500 6 LYS A 8 102.99 -57.16 REMARK 500 6 SER A 75 108.56 -41.43 REMARK 500 7 SER A 5 41.54 39.15 REMARK 500 7 LYS A 8 134.76 -36.49 REMARK 500 7 ARG A 9 133.25 -175.01 REMARK 500 7 ASP A 68 106.46 -35.24 REMARK 500 7 ASN A 69 45.76 -102.61 REMARK 500 8 LEU A 63 109.14 -50.51 REMARK 500 8 ALA A 70 41.50 -81.19 REMARK 500 9 SER A 2 41.86 -91.08 REMARK 500 9 LYS A 8 -36.51 -134.01 REMARK 500 9 ARG A 9 47.56 34.07 REMARK 500 9 LYS A 12 -39.38 -34.23 REMARK 500 10 SER A 2 38.52 -90.35 REMARK 500 10 LYS A 10 166.67 -42.87 REMARK 500 10 ARG A 67 40.24 70.18 REMARK 500 11 SER A 2 153.57 -43.82 REMARK 500 11 LEU A 63 105.80 -49.76 REMARK 500 11 ALA A 70 43.20 -108.55 REMARK 500 12 LYS A 8 149.22 -174.90 REMARK 500 12 ARG A 67 46.69 33.42 REMARK 500 12 ASN A 69 42.81 39.62 REMARK 500 12 ALA A 70 41.98 34.19 REMARK 500 13 LYS A 59 -39.18 -39.33 REMARK 500 14 LYS A 10 163.17 -44.11 REMARK 500 14 CYS A 25 119.86 -162.80 REMARK 500 14 ARG A 67 127.11 -34.26 REMARK 500 14 ASN A 69 130.81 -37.67 REMARK 500 14 SER A 71 100.07 -34.52 REMARK 500 14 PRO A 73 1.11 -69.75 REMARK 500 14 SER A 75 152.09 -36.80 REMARK 500 16 SER A 2 -60.97 -125.03 REMARK 500 16 SER A 5 99.94 -46.31 REMARK 500 16 LYS A 59 -36.80 -39.97 REMARK 500 16 LEU A 63 109.05 -51.43 REMARK 500 16 ARG A 67 141.66 -38.52 REMARK 500 17 SER A 5 41.97 39.41 REMARK 500 17 ALA A 70 39.23 70.56 REMARK 500 REMARK 500 THIS ENTRY HAS 60 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002001415.1 RELATED DB: TARGETDB DBREF 2ECC A 8 70 UNP Q8IX15 HOMEZ_HUMAN 337 399 SEQADV 2ECC GLY A 1 UNP Q8IX15 CLONING ARTIFACT SEQADV 2ECC SER A 2 UNP Q8IX15 CLONING ARTIFACT SEQADV 2ECC SER A 3 UNP Q8IX15 CLONING ARTIFACT SEQADV 2ECC GLY A 4 UNP Q8IX15 CLONING ARTIFACT SEQADV 2ECC SER A 5 UNP Q8IX15 CLONING ARTIFACT SEQADV 2ECC SER A 6 UNP Q8IX15 CLONING ARTIFACT SEQADV 2ECC GLY A 7 UNP Q8IX15 CLONING ARTIFACT SEQADV 2ECC SER A 71 UNP Q8IX15 CLONING ARTIFACT SEQADV 2ECC GLY A 72 UNP Q8IX15 CLONING ARTIFACT SEQADV 2ECC PRO A 73 UNP Q8IX15 CLONING ARTIFACT SEQADV 2ECC SER A 74 UNP Q8IX15 CLONING ARTIFACT SEQADV 2ECC SER A 75 UNP Q8IX15 CLONING ARTIFACT SEQADV 2ECC GLY A 76 UNP Q8IX15 CLONING ARTIFACT SEQRES 1 A 76 GLY SER SER GLY SER SER GLY LYS ARG LYS THR LYS GLU SEQRES 2 A 76 GLN LEU ALA ILE LEU LYS SER PHE PHE LEU GLN CYS GLN SEQRES 3 A 76 TRP ALA ARG ARG GLU ASP TYR GLN LYS LEU GLU GLN ILE SEQRES 4 A 76 THR GLY LEU PRO ARG PRO GLU ILE ILE GLN TRP PHE GLY SEQRES 5 A 76 ASP THR ARG TYR ALA LEU LYS HIS GLY GLN LEU LYS TRP SEQRES 6 A 76 PHE ARG ASP ASN ALA SER GLY PRO SER SER GLY HELIX 1 1 THR A 11 CYS A 25 1 15 HELIX 2 2 ARG A 29 THR A 40 1 12 HELIX 3 3 PRO A 43 GLY A 61 1 19 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1