data_2EDG # _entry.id 2EDG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2EDG pdb_00002edg 10.2210/pdb2edg/pdb RCSB RCSB026527 ? ? WWPDB D_1000026527 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id mmi002016772.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2EDG _pdbx_database_status.recvd_initial_deposition_date 2007-02-14 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Endo, H.' 1 'Yoshida, M.' 2 'Hayashi, F.' 3 'Yokoyama, S.' 4 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 5 # _citation.id primary _citation.title 'Solution structure of the GCV_H domain from mouse glycine' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Endo, H.' 1 ? primary 'Yoshida, M.' 2 ? primary 'Hayashi, F.' 3 ? primary 'Yokoyama, S.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Glycine cleavage system H protein' _entity.formula_weight 14188.617 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment GCV_H _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGRKFTEKHEWITTEEGIGTVGISNFAQEALGDVVYCSLPEVGTKLKKQEEFGALESVKAASELYSPLSGEVTEV NEALAENPGLVNKSCYEDGWLIKMTLSDPSELDELMSEEAYEKYVKSIEE ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGRKFTEKHEWITTEEGIGTVGISNFAQEALGDVVYCSLPEVGTKLKKQEEFGALESVKAASELYSPLSGEVTEV NEALAENPGLVNKSCYEDGWLIKMTLSDPSELDELMSEEAYEKYVKSIEE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier mmi002016772.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 ARG n 1 9 LYS n 1 10 PHE n 1 11 THR n 1 12 GLU n 1 13 LYS n 1 14 HIS n 1 15 GLU n 1 16 TRP n 1 17 ILE n 1 18 THR n 1 19 THR n 1 20 GLU n 1 21 GLU n 1 22 GLY n 1 23 ILE n 1 24 GLY n 1 25 THR n 1 26 VAL n 1 27 GLY n 1 28 ILE n 1 29 SER n 1 30 ASN n 1 31 PHE n 1 32 ALA n 1 33 GLN n 1 34 GLU n 1 35 ALA n 1 36 LEU n 1 37 GLY n 1 38 ASP n 1 39 VAL n 1 40 VAL n 1 41 TYR n 1 42 CYS n 1 43 SER n 1 44 LEU n 1 45 PRO n 1 46 GLU n 1 47 VAL n 1 48 GLY n 1 49 THR n 1 50 LYS n 1 51 LEU n 1 52 LYS n 1 53 LYS n 1 54 GLN n 1 55 GLU n 1 56 GLU n 1 57 PHE n 1 58 GLY n 1 59 ALA n 1 60 LEU n 1 61 GLU n 1 62 SER n 1 63 VAL n 1 64 LYS n 1 65 ALA n 1 66 ALA n 1 67 SER n 1 68 GLU n 1 69 LEU n 1 70 TYR n 1 71 SER n 1 72 PRO n 1 73 LEU n 1 74 SER n 1 75 GLY n 1 76 GLU n 1 77 VAL n 1 78 THR n 1 79 GLU n 1 80 VAL n 1 81 ASN n 1 82 GLU n 1 83 ALA n 1 84 LEU n 1 85 ALA n 1 86 GLU n 1 87 ASN n 1 88 PRO n 1 89 GLY n 1 90 LEU n 1 91 VAL n 1 92 ASN n 1 93 LYS n 1 94 SER n 1 95 CYS n 1 96 TYR n 1 97 GLU n 1 98 ASP n 1 99 GLY n 1 100 TRP n 1 101 LEU n 1 102 ILE n 1 103 LYS n 1 104 MET n 1 105 THR n 1 106 LEU n 1 107 SER n 1 108 ASP n 1 109 PRO n 1 110 SER n 1 111 GLU n 1 112 LEU n 1 113 ASP n 1 114 GLU n 1 115 LEU n 1 116 MET n 1 117 SER n 1 118 GLU n 1 119 GLU n 1 120 ALA n 1 121 TYR n 1 122 GLU n 1 123 LYS n 1 124 TYR n 1 125 VAL n 1 126 LYS n 1 127 SER n 1 128 ILE n 1 129 GLU n 1 130 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene Gcsh _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P060313-07 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GCSH_MOUSE _struct_ref.pdbx_db_accession Q91WK5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RKFTEKHEWITTEEGIGTVGISNFAQEALGDVVYCSLPEVGTKLKKQEEFGALESVKAASELYSPLSGEVTEVNEALAEN PGLVNKSCYEDGWLIKMTLSDPSELDELMSEEAYEKYVKSIEE ; _struct_ref.pdbx_align_begin 48 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2EDG _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 130 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q91WK5 _struct_ref_seq.db_align_beg 48 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 170 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 130 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2EDG GLY A 1 ? UNP Q91WK5 ? ? 'cloning artifact' 1 1 1 2EDG SER A 2 ? UNP Q91WK5 ? ? 'cloning artifact' 2 2 1 2EDG SER A 3 ? UNP Q91WK5 ? ? 'cloning artifact' 3 3 1 2EDG GLY A 4 ? UNP Q91WK5 ? ? 'cloning artifact' 4 4 1 2EDG SER A 5 ? UNP Q91WK5 ? ? 'cloning artifact' 5 5 1 2EDG SER A 6 ? UNP Q91WK5 ? ? 'cloning artifact' 6 6 1 2EDG GLY A 7 ? UNP Q91WK5 ? ? 'cloning artifact' 7 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_13C-separated_NOESY 1 2 1 3D_15N-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.79mM 13C, 15N-labeled protein; 20mM d-Tris-HCl(pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O, 90% H2O' _pdbx_nmr_sample_details.solvent_system '10% D2O, 90% H2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2EDG _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2EDG _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2EDG _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection VNMR 6.1c Varian 1 processing NMRPipe 20060702 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B. A.' 3 'data analysis' KUJIRA 0.9820 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2EDG _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2EDG _struct.title 'Solution structure of the GCV_H domain from mouse glycine' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2EDG _struct_keywords.pdbx_keywords 'BIOSYNTHETIC PROTEIN' _struct_keywords.text ;Barrel-sandwich hybrid, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, BIOSYNTHETIC PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 29 ? GLY A 37 ? SER A 29 GLY A 37 1 ? 9 HELX_P HELX_P2 2 GLY A 89 ? SER A 94 ? GLY A 89 SER A 94 1 ? 6 HELX_P HELX_P3 3 SER A 110 ? GLU A 114 ? SER A 110 GLU A 114 5 ? 5 HELX_P HELX_P4 4 GLU A 118 ? SER A 127 ? GLU A 118 SER A 127 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 50 ? LEU A 51 ? LYS A 50 LEU A 51 A 2 GLY A 75 ? VAL A 80 ? GLY A 75 VAL A 80 A 3 ILE A 102 ? THR A 105 ? ILE A 102 THR A 105 A 4 ILE A 23 ? ILE A 28 ? ILE A 23 ILE A 28 A 5 GLU A 15 ? GLU A 20 ? GLU A 15 GLU A 20 A 6 LYS A 9 ? PHE A 10 ? LYS A 9 PHE A 10 A 7 MET A 116 ? SER A 117 ? MET A 116 SER A 117 B 1 VAL A 39 ? SER A 43 ? VAL A 39 SER A 43 B 2 GLU A 56 ? SER A 62 ? GLU A 56 SER A 62 B 3 ALA A 66 ? TYR A 70 ? ALA A 66 TYR A 70 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 51 ? O LEU A 51 N GLY A 75 ? N GLY A 75 A 2 3 N THR A 78 ? N THR A 78 O LYS A 103 ? O LYS A 103 A 3 4 O MET A 104 ? O MET A 104 N GLY A 24 ? N GLY A 24 A 4 5 O GLY A 27 ? O GLY A 27 N TRP A 16 ? N TRP A 16 A 5 6 O ILE A 17 ? O ILE A 17 N LYS A 9 ? N LYS A 9 A 6 7 N PHE A 10 ? N PHE A 10 O MET A 116 ? O MET A 116 B 1 2 N SER A 43 ? N SER A 43 O ALA A 59 ? O ALA A 59 B 2 3 N LEU A 60 ? N LEU A 60 O SER A 67 ? O SER A 67 # _database_PDB_matrix.entry_id 2EDG _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2EDG _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 PHE 10 10 10 PHE PHE A . n A 1 11 THR 11 11 11 THR THR A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 HIS 14 14 14 HIS HIS A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 TRP 16 16 16 TRP TRP A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 GLU 20 20 20 GLU GLU A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 ASN 30 30 30 ASN ASN A . n A 1 31 PHE 31 31 31 PHE PHE A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 GLN 33 33 33 GLN GLN A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 ASP 38 38 38 ASP ASP A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 TYR 41 41 41 TYR TYR A . n A 1 42 CYS 42 42 42 CYS CYS A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 LYS 53 53 53 LYS LYS A . n A 1 54 GLN 54 54 54 GLN GLN A . n A 1 55 GLU 55 55 55 GLU GLU A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 PHE 57 57 57 PHE PHE A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 GLU 68 68 68 GLU GLU A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 TYR 70 70 70 TYR TYR A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 PRO 72 72 72 PRO PRO A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 THR 78 78 78 THR THR A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 ASN 81 81 81 ASN ASN A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 ASN 87 87 87 ASN ASN A . n A 1 88 PRO 88 88 88 PRO PRO A . n A 1 89 GLY 89 89 89 GLY GLY A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 ASN 92 92 92 ASN ASN A . n A 1 93 LYS 93 93 93 LYS LYS A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 CYS 95 95 95 CYS CYS A . n A 1 96 TYR 96 96 96 TYR TYR A . n A 1 97 GLU 97 97 97 GLU GLU A . n A 1 98 ASP 98 98 98 ASP ASP A . n A 1 99 GLY 99 99 99 GLY GLY A . n A 1 100 TRP 100 100 100 TRP TRP A . n A 1 101 LEU 101 101 101 LEU LEU A . n A 1 102 ILE 102 102 102 ILE ILE A . n A 1 103 LYS 103 103 103 LYS LYS A . n A 1 104 MET 104 104 104 MET MET A . n A 1 105 THR 105 105 105 THR THR A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 SER 107 107 107 SER SER A . n A 1 108 ASP 108 108 108 ASP ASP A . n A 1 109 PRO 109 109 109 PRO PRO A . n A 1 110 SER 110 110 110 SER SER A . n A 1 111 GLU 111 111 111 GLU GLU A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 ASP 113 113 113 ASP ASP A . n A 1 114 GLU 114 114 114 GLU GLU A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 MET 116 116 116 MET MET A . n A 1 117 SER 117 117 117 SER SER A . n A 1 118 GLU 118 118 118 GLU GLU A . n A 1 119 GLU 119 119 119 GLU GLU A . n A 1 120 ALA 120 120 120 ALA ALA A . n A 1 121 TYR 121 121 121 TYR TYR A . n A 1 122 GLU 122 122 122 GLU GLU A . n A 1 123 LYS 123 123 123 LYS LYS A . n A 1 124 TYR 124 124 124 TYR TYR A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 LYS 126 126 126 LYS LYS A . n A 1 127 SER 127 127 127 SER SER A . n A 1 128 ILE 128 128 128 ILE ILE A . n A 1 129 GLU 129 129 129 GLU GLU A . n A 1 130 GLU 130 130 130 GLU GLU A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-08-14 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_struct_assembly 4 3 'Structure model' pdbx_struct_oper_list 5 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 45 ? ? -69.85 -175.12 2 1 LYS A 64 ? ? -97.69 -71.99 3 1 VAL A 91 ? ? -35.64 -30.94 4 1 GLU A 97 ? ? -35.90 -70.03 5 1 PRO A 109 ? ? -69.69 0.55 6 2 PRO A 45 ? ? -69.79 -174.24 7 2 GLU A 97 ? ? -39.10 -71.79 8 3 VAL A 47 ? ? -38.61 133.47 9 3 ASN A 92 ? ? -79.69 -73.00 10 3 PRO A 109 ? ? -69.81 2.34 11 3 LEU A 115 ? ? -40.49 158.57 12 4 GLN A 54 ? ? 36.71 52.47 13 4 ASN A 92 ? ? -77.41 -71.50 14 4 LEU A 101 ? ? -37.25 -73.06 15 4 PRO A 109 ? ? -69.80 0.25 16 4 LEU A 115 ? ? -54.58 174.02 17 5 LYS A 13 ? ? -89.16 45.01 18 5 HIS A 14 ? ? 36.18 33.49 19 5 LYS A 64 ? ? -121.96 -59.26 20 5 VAL A 91 ? ? -34.81 -32.19 21 6 PRO A 45 ? ? -69.72 -171.05 22 6 LYS A 64 ? ? -96.04 -69.55 23 6 LEU A 101 ? ? -40.06 -74.27 24 6 PRO A 109 ? ? -69.75 1.55 25 6 LEU A 115 ? ? -44.55 153.57 26 7 SER A 2 ? ? -67.41 82.98 27 7 SER A 5 ? ? 35.90 42.45 28 7 LYS A 13 ? ? -89.32 30.68 29 7 PRO A 45 ? ? -69.78 -175.93 30 7 LYS A 64 ? ? -98.43 -68.77 31 7 VAL A 91 ? ? -38.60 -25.99 32 7 GLU A 97 ? ? -114.91 -70.81 33 8 PRO A 45 ? ? -69.74 -176.99 34 8 LYS A 64 ? ? -91.37 -69.50 35 8 VAL A 77 ? ? -58.75 105.52 36 8 ASN A 92 ? ? -79.73 -72.48 37 8 GLU A 97 ? ? -37.86 -71.66 38 8 LEU A 101 ? ? -37.13 -73.81 39 9 SER A 6 ? ? -172.87 127.17 40 9 LYS A 13 ? ? -99.43 32.42 41 9 VAL A 47 ? ? -40.45 150.26 42 9 GLN A 54 ? ? 38.55 50.39 43 9 LYS A 64 ? ? -83.46 -70.05 44 9 ASN A 92 ? ? -61.38 -70.68 45 9 LYS A 126 ? ? -34.54 -39.00 46 10 LYS A 13 ? ? -90.96 45.35 47 10 HIS A 14 ? ? 36.27 37.42 48 10 PRO A 45 ? ? -69.77 -178.59 49 10 VAL A 47 ? ? -34.91 140.66 50 10 GLU A 56 ? ? -58.77 108.90 51 10 ASN A 87 ? ? -112.34 71.90 52 10 PRO A 88 ? ? -69.72 1.22 53 10 VAL A 91 ? ? -33.96 -33.77 54 10 GLU A 97 ? ? -38.60 -70.09 55 10 PRO A 109 ? ? -69.72 2.80 56 10 LEU A 115 ? ? -52.34 171.97 57 11 SER A 5 ? ? 38.37 41.24 58 11 LYS A 13 ? ? -83.56 42.64 59 11 HIS A 14 ? ? 35.87 36.69 60 11 VAL A 91 ? ? -32.96 -34.46 61 11 ASN A 92 ? ? -69.97 -70.52 62 11 LEU A 101 ? ? -34.43 -73.89 63 11 LEU A 115 ? ? -45.51 159.43 64 12 SER A 2 ? ? 38.79 47.30 65 12 PRO A 45 ? ? -69.83 -179.58 66 12 GLU A 56 ? ? -58.44 107.66 67 12 LYS A 64 ? ? -88.48 -70.42 68 12 ASN A 87 ? ? -116.44 70.07 69 12 GLU A 97 ? ? -43.42 -70.86 70 12 LEU A 101 ? ? -39.35 -72.90 71 12 ASP A 108 ? ? -116.99 74.54 72 12 PRO A 109 ? ? -69.68 2.33 73 12 GLU A 118 ? ? -35.00 -35.52 74 12 GLU A 119 ? ? -60.24 -71.09 75 13 LYS A 13 ? ? -90.03 35.76 76 13 HIS A 14 ? ? 39.01 37.63 77 13 PRO A 45 ? ? -69.77 -176.29 78 13 VAL A 47 ? ? -34.96 146.84 79 13 LYS A 64 ? ? -99.19 -70.64 80 13 VAL A 91 ? ? -38.30 -26.61 81 13 GLU A 97 ? ? -34.07 -71.41 82 13 PRO A 109 ? ? -69.75 1.82 83 13 MET A 116 ? ? -52.33 109.43 84 13 SER A 117 ? ? -56.31 171.09 85 14 LYS A 13 ? ? -82.33 39.83 86 14 HIS A 14 ? ? 36.02 42.33 87 14 GLU A 21 ? ? 39.63 25.75 88 14 GLU A 56 ? ? -60.81 95.88 89 14 VAL A 91 ? ? -37.32 -28.00 90 14 ASN A 92 ? ? -72.43 -72.94 91 14 GLU A 97 ? ? -36.21 -70.18 92 14 PRO A 109 ? ? -69.73 2.64 93 15 HIS A 14 ? ? 41.81 27.53 94 15 GLN A 54 ? ? 35.32 54.83 95 15 GLU A 56 ? ? -46.19 107.06 96 15 VAL A 91 ? ? -34.17 -32.88 97 15 ASN A 92 ? ? -70.05 -71.65 98 15 GLU A 97 ? ? -39.14 -74.03 99 15 LEU A 115 ? ? -65.70 -176.05 100 16 PRO A 45 ? ? -69.72 -171.07 101 16 VAL A 91 ? ? -32.60 -37.95 102 16 LEU A 101 ? ? -39.75 -74.83 103 16 PRO A 109 ? ? -69.69 0.88 104 17 PRO A 45 ? ? -69.75 -170.04 105 17 LYS A 64 ? ? -100.05 -69.62 106 17 ASN A 81 ? ? -59.04 107.67 107 17 VAL A 91 ? ? -35.98 -32.20 108 17 GLU A 97 ? ? -41.98 -70.02 109 17 LEU A 115 ? ? -51.61 170.38 110 18 LYS A 13 ? ? -87.79 32.69 111 18 VAL A 47 ? ? -38.38 147.04 112 18 VAL A 91 ? ? -38.18 -28.41 113 18 PRO A 109 ? ? -69.74 1.36 114 19 SER A 5 ? ? -36.42 134.90 115 19 PRO A 45 ? ? -69.68 -176.81 116 19 LYS A 64 ? ? -107.60 -62.73 117 19 ASN A 92 ? ? -86.76 -70.48 118 19 LEU A 101 ? ? -34.39 -72.07 119 19 ASP A 108 ? ? -119.51 77.74 120 20 SER A 6 ? ? -162.10 112.14 121 20 LYS A 13 ? ? -94.43 38.21 122 20 PRO A 45 ? ? -69.72 -179.57 123 20 VAL A 91 ? ? -35.75 -30.27 124 20 ASP A 108 ? ? -117.45 74.11 125 20 PRO A 109 ? ? -69.78 2.81 126 20 LEU A 115 ? ? -43.83 160.18 #