data_2EES # _entry.id 2EES # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2EES pdb_00002ees 10.2210/pdb2ees/pdb NDB UR0111 ? ? RCSB RCSB026575 ? ? WWPDB D_1000026575 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1U8D 'guanine riboswitch bound to hypoxanthine' unspecified PDB 2EET 'guanine riboswitch A21G, U75C mutant bound to hypoxanthine' unspecified PDB 2EEU 'guanine riboswitch U22A, A52U mutant bound to hypoxanthine' unspecified PDB 2EEV 'guanine riboswitch U22C, A52G mutant bound to hypoxanthine' unspecified PDB 2EEW 'guanine Riboswitch U47C mutant bound to hypoxanthine' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2EES _pdbx_database_status.recvd_initial_deposition_date 2007-02-18 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gilbert, S.D.' 1 'Edwards, A.L.' 2 'Batey, R.T.' 3 # _citation.id primary _citation.title 'Mutational analysis of the purine riboswitch aptamer domain' _citation.journal_abbrev Biochemistry _citation.journal_volume 46 _citation.page_first 13297 _citation.page_last 13309 _citation.year 2007 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17960911 _citation.pdbx_database_id_DOI 10.1021/bi700410g # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gilbert, S.D.' 1 ? primary 'Love, C.E.' 2 ? primary 'Edwards, A.L.' 3 ? primary 'Batey, R.T.' 4 ? # _cell.entry_id 2EES _cell.length_a 132.540 _cell.length_b 35.960 _cell.length_c 41.470 _cell.angle_alpha 90.00 _cell.angle_beta 91.31 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2EES _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Guanine riboswitch' 21506.783 1 ? 'A21U, U75A' ? ? 2 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 3 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 12 ? ? ? ? 4 non-polymer syn HYPOXANTHINE 136.111 1 ? ? ? ? 5 water nat water 18.015 261 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGACAUUUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGACAAUGUCC _entity_poly.pdbx_seq_one_letter_code_can GGACAUUUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGACAAUGUCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 C n 1 5 A n 1 6 U n 1 7 U n 1 8 U n 1 9 A n 1 10 A n 1 11 U n 1 12 C n 1 13 G n 1 14 C n 1 15 G n 1 16 U n 1 17 G n 1 18 G n 1 19 A n 1 20 U n 1 21 A n 1 22 U n 1 23 G n 1 24 G n 1 25 C n 1 26 A n 1 27 C n 1 28 G n 1 29 C n 1 30 A n 1 31 A n 1 32 G n 1 33 U n 1 34 U n 1 35 U n 1 36 C n 1 37 U n 1 38 A n 1 39 C n 1 40 C n 1 41 G n 1 42 G n 1 43 G n 1 44 C n 1 45 A n 1 46 C n 1 47 C n 1 48 G n 1 49 U n 1 50 A n 1 51 A n 1 52 A n 1 53 U n 1 54 G n 1 55 U n 1 56 C n 1 57 C n 1 58 G n 1 59 A n 1 60 C n 1 61 A n 1 62 A n 1 63 U n 1 64 G n 1 65 U n 1 66 C n 1 67 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details ;This sequence was engineered based on the guanine riboswitch found in the 5'UTR of the xpt-pbuX gene in Bacillus subtilis(bacteria). ; # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2EES _struct_ref.pdbx_db_accession PDB _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GGACAUUUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGACAAUGUCC _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2EES _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 67 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession PDB _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 67 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 15 _struct_ref_seq.pdbx_auth_seq_align_end 81 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 HPA non-polymer . HYPOXANTHINE ? 'C5 H4 N4 O' 136.111 NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 2EES _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.30 _exptl_crystal.density_percent_sol 46.45 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details ;20% Polyethylene glycol 3000, 640mM ammonium acetate, 10mM cobalt hexammine chloride, 10mM K(+)-HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'Polyethylene glycol 3000' ? ? ? 1 2 1 'ammonium acetate' ? ? ? 1 3 1 'cobalt hexammine chloride' ? ? ? 1 4 1 'K(+)-HEPES' ? ? ? 1 5 1 H2O ? ? ? 1 6 2 'Polyethylene glycol 3000' ? ? ? 1 7 2 'ammonium acetate' ? ? ? 1 8 2 'cobalt hexammine chloride' ? ? ? 1 9 2 'K(+)-HEPES' ? ? ? 1 10 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS' _diffrn_detector.pdbx_collection_date 2006-06-22 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Nickel Filter' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 2EES _reflns.observed_criterion_sigma_I 3.0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 20 _reflns.d_resolution_high 1.75 _reflns.number_obs 19129 _reflns.number_all 19460 _reflns.percent_possible_obs 98.30 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.048 _reflns.pdbx_netI_over_sigmaI 15.9 _reflns.B_iso_Wilson_estimate 18.3 _reflns.pdbx_redundancy 3.42 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.75 _reflns_shell.d_res_low 1.81 _reflns_shell.percent_possible_all 85.2 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.17 _reflns_shell.meanI_over_sigI_obs 4.1 _reflns_shell.pdbx_redundancy 2.81 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1917 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2EES _refine.ls_number_reflns_obs 19108 _refine.ls_number_reflns_all 19108 _refine.pdbx_ls_sigma_I 3 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1061848.47 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.91 _refine.ls_d_res_high 1.75 _refine.ls_percent_reflns_obs 95.5 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.207 _refine.ls_R_factor_R_free 0.241 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.3 _refine.ls_number_reflns_R_free 1402 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 26.9 _refine.aniso_B[1][1] 0.46 _refine.aniso_B[2][2] 0.46 _refine.aniso_B[3][3] -0.92 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 2.17 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.3 _refine.solvent_model_param_bsol 25 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1U8D' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2EES _refine_analyze.Luzzati_coordinate_error_obs 0.21 _refine_analyze.Luzzati_sigma_a_obs 0.14 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.25 _refine_analyze.Luzzati_sigma_a_free 0.15 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1422 _refine_hist.pdbx_number_atoms_ligand 98 _refine_hist.number_atoms_solvent 261 _refine_hist.number_atoms_total 1781 _refine_hist.d_res_high 1.75 _refine_hist.d_res_low 19.91 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.021 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 2.1 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 21.5 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 2.44 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.75 _refine_ls_shell.d_res_low 1.86 _refine_ls_shell.number_reflns_R_work 2292 _refine_ls_shell.R_factor_R_work 0.3 _refine_ls_shell.percent_reflns_obs 74.5 _refine_ls_shell.R_factor_R_free 0.313 _refine_ls_shell.R_factor_R_free_error 0.025 _refine_ls_shell.percent_reflns_R_free 6.5 _refine_ls_shell.number_reflns_R_free 160 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 2292 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 water_rep.param water_rep.top 'X-RAY DIFFRACTION' 2 dna-rna_rep_revise.param dna-rna_rep_revise.top 'X-RAY DIFFRACTION' 3 ion.param ion.top 'X-RAY DIFFRACTION' 4 cohex_rep.param cohex_rep.top 'X-RAY DIFFRACTION' 5 acetate.param acetate.top 'X-RAY DIFFRACTION' # _struct.entry_id 2EES _struct.title 'Guanine riboswitch A21U, U75A mutant bound to hypoxanthine' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2EES _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'mRNA, riboswitch, guanine, hypoxanthine, RNA-ligand complex, double helix, three-way junction, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 4 ? P N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A G 2 N7 ? ? A G 15 A G 16 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog2 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 16 A C 80 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog3 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 65 N3 ? ? A A 17 A U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 65 O4 ? ? A A 17 A U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 64 N1 ? ? A C 18 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 64 O6 ? ? A C 18 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 64 N2 ? ? A C 18 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 63 N3 ? ? A A 19 A U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 63 O4 ? ? A A 19 A U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 62 N1 ? ? A U 20 A A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 62 N6 ? ? A U 20 A A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 61 N1 ? ? A U 21 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 61 N6 ? ? A U 21 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 38 N1 ? ? A U 22 A A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 38 N6 ? ? A U 22 A A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 9 N1 ? ? ? 1_555 A G 32 N2 ? ? A A 23 A G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog17 hydrog ? ? A A 9 N6 ? ? ? 1_555 A G 32 N3 ? ? A A 23 A G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog18 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 31 N1 ? ? A U 25 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 31 N6 ? ? A U 25 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 12 N4 ? ? ? 1_555 A A 30 N1 ? ? A C 26 A A 44 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog21 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 29 N3 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 29 O2 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 29 N4 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 27 N3 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 27 O2 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 27 N4 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 16 N3 ? ? ? 1_555 A A 26 N1 ? ? A U 30 A A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 16 O4 ? ? ? 1_555 A A 26 N6 ? ? A U 30 A A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 25 N3 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 25 O2 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 25 N4 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A A 19 N1 ? ? ? 1_555 A A 52 N6 ? ? A A 33 A A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog36 hydrog ? ? A A 19 N6 ? ? ? 1_555 A A 52 N7 ? ? A A 33 A A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog37 hydrog ? ? A U 20 O2 ? ? ? 1_555 A G 23 N2 ? ? A U 34 A G 37 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog38 hydrog ? ? A U 20 N3 ? ? ? 1_555 A A 51 N7 ? ? A U 34 A A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog39 hydrog ? ? A U 20 O2 ? ? ? 1_555 A A 51 N6 ? ? A U 34 A A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog40 hydrog ? ? A A 21 N6 ? ? ? 1_555 A A 50 N1 ? ? A A 35 A A 64 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog41 hydrog ? ? A A 21 N7 ? ? ? 1_555 A A 50 N6 ? ? A A 35 A A 64 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog42 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 47 N3 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 47 O2 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 47 N4 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 46 N3 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 24 N2 ? ? ? 1_555 A C 46 O2 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 24 O6 ? ? ? 1_555 A C 46 N4 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 24 N2 ? ? ? 1_555 A A 52 N1 ? ? A G 38 A A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog49 hydrog ? ? A G 24 N3 ? ? ? 1_555 A A 52 N6 ? ? A G 38 A A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog50 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 39 N3 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 32 N2 ? ? ? 1_555 A C 39 O2 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 32 O6 ? ? ? 1_555 A C 39 N4 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A U 33 N3 ? ? ? 1_555 A U 37 O4 ? ? A U 47 A U 51 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog54 hydrog ? ? A U 35 N3 ? ? ? 1_555 A A 62 N3 ? ? A U 49 A A 76 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog55 hydrog ? ? A C 36 N4 ? ? ? 1_555 A A 61 N3 ? ? A C 50 A A 75 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog56 hydrog ? ? A C 40 N3 ? ? ? 1_555 A G 58 N1 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 40 N4 ? ? ? 1_555 A G 58 O6 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 40 O2 ? ? ? 1_555 A G 58 N2 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 41 N1 ? ? ? 1_555 A C 57 N3 ? ? A G 55 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 41 N2 ? ? ? 1_555 A C 57 O2 ? ? A G 55 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 41 O6 ? ? ? 1_555 A C 57 N4 ? ? A G 55 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 42 N1 ? ? ? 1_555 A C 56 N3 ? ? A G 56 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 42 N2 ? ? ? 1_555 A C 56 O2 ? ? A G 56 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 42 O6 ? ? ? 1_555 A C 56 N4 ? ? A G 56 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 43 N1 ? ? ? 1_555 A U 55 O2 ? ? A G 57 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog66 hydrog ? ? A G 43 O6 ? ? ? 1_555 A U 55 N3 ? ? A G 57 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog67 hydrog ? ? A C 44 N3 ? ? ? 1_555 A G 54 N1 ? ? A C 58 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A C 44 N4 ? ? ? 1_555 A G 54 O6 ? ? A C 58 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A C 44 O2 ? ? ? 1_555 A G 54 N2 ? ? A C 58 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A A 45 N1 ? ? ? 1_555 A U 53 N3 ? ? A A 59 A U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A A 45 N6 ? ? ? 1_555 A U 53 O4 ? ? A A 59 A U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A C 47 O2 ? ? ? 1_555 A A 51 N6 ? ? A C 61 A A 65 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog73 hydrog ? ? A G 48 N2 ? ? ? 1_555 A U 49 O4 ? ? A G 62 A U 63 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ACT 96 ? 7 'BINDING SITE FOR RESIDUE ACT A 96' AC2 Software A NCO 101 ? 11 'BINDING SITE FOR RESIDUE NCO A 101' AC3 Software A NCO 102 ? 13 'BINDING SITE FOR RESIDUE NCO A 102' AC4 Software A NCO 103 ? 10 'BINDING SITE FOR RESIDUE NCO A 103' AC5 Software A NCO 104 ? 9 'BINDING SITE FOR RESIDUE NCO A 104' AC6 Software A NCO 105 ? 10 'BINDING SITE FOR RESIDUE NCO A 105' AC7 Software A NCO 106 ? 7 'BINDING SITE FOR RESIDUE NCO A 106' AC8 Software A NCO 107 ? 5 'BINDING SITE FOR RESIDUE NCO A 107' AC9 Software A NCO 108 ? 4 'BINDING SITE FOR RESIDUE NCO A 108' BC1 Software A NCO 109 ? 5 'BINDING SITE FOR RESIDUE NCO A 109' BC2 Software A NCO 110 ? 2 'BINDING SITE FOR RESIDUE NCO A 110' BC3 Software A NCO 111 ? 4 'BINDING SITE FOR RESIDUE NCO A 111' BC4 Software A NCO 112 ? 6 'BINDING SITE FOR RESIDUE NCO A 112' BC5 Software A HPA 90 ? 8 'BINDING SITE FOR RESIDUE HPA A 90' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 G A 18 ? G A 32 . ? 1_555 ? 2 AC1 7 A A 19 ? A A 33 . ? 1_555 ? 3 AC1 7 G A 24 ? G A 38 . ? 1_555 ? 4 AC1 7 C A 25 ? C A 39 . ? 1_555 ? 5 AC1 7 A A 52 ? A A 66 . ? 1_555 ? 6 AC1 7 U A 53 ? U A 67 . ? 1_555 ? 7 AC1 7 HOH P . ? HOH A 125 . ? 1_555 ? 8 AC2 11 G A 15 ? G A 29 . ? 4_455 ? 9 AC2 11 U A 16 ? U A 30 . ? 4_455 ? 10 AC2 11 A A 52 ? A A 66 . ? 1_555 ? 11 AC2 11 U A 53 ? U A 67 . ? 1_555 ? 12 AC2 11 HOH P . ? HOH A 137 . ? 1_555 ? 13 AC2 11 HOH P . ? HOH A 149 . ? 4_455 ? 14 AC2 11 HOH P . ? HOH A 165 . ? 1_555 ? 15 AC2 11 HOH P . ? HOH A 182 . ? 1_555 ? 16 AC2 11 HOH P . ? HOH A 307 . ? 1_555 ? 17 AC2 11 HOH P . ? HOH A 329 . ? 4_455 ? 18 AC2 11 HOH P . ? HOH A 348 . ? 1_555 ? 19 AC3 13 G A 24 ? G A 38 . ? 1_555 ? 20 AC3 13 C A 25 ? C A 39 . ? 1_555 ? 21 AC3 13 G A 42 ? G A 56 . ? 1_555 ? 22 AC3 13 G A 43 ? G A 57 . ? 4_446 ? 23 AC3 13 C A 44 ? C A 58 . ? 4_446 ? 24 AC3 13 HOH P . ? HOH A 164 . ? 1_555 ? 25 AC3 13 HOH P . ? HOH A 211 . ? 1_555 ? 26 AC3 13 HOH P . ? HOH A 213 . ? 4_446 ? 27 AC3 13 HOH P . ? HOH A 241 . ? 1_555 ? 28 AC3 13 HOH P . ? HOH A 279 . ? 4_446 ? 29 AC3 13 HOH P . ? HOH A 293 . ? 4_456 ? 30 AC3 13 HOH P . ? HOH A 335 . ? 4_446 ? 31 AC3 13 HOH P . ? HOH A 365 . ? 1_555 ? 32 AC4 10 C A 25 ? C A 39 . ? 1_555 ? 33 AC4 10 G A 41 ? G A 55 . ? 1_555 ? 34 AC4 10 G A 42 ? G A 56 . ? 1_555 ? 35 AC4 10 G A 43 ? G A 57 . ? 1_555 ? 36 AC4 10 G A 54 ? G A 68 . ? 1_555 ? 37 AC4 10 U A 55 ? U A 69 . ? 1_555 ? 38 AC4 10 HOH P . ? HOH A 197 . ? 1_555 ? 39 AC4 10 HOH P . ? HOH A 239 . ? 1_555 ? 40 AC4 10 HOH P . ? HOH A 260 . ? 1_555 ? 41 AC4 10 HOH P . ? HOH A 289 . ? 1_555 ? 42 AC5 9 U A 16 ? U A 30 . ? 1_555 ? 43 AC5 9 G A 17 ? G A 31 . ? 1_555 ? 44 AC5 9 G A 18 ? G A 32 . ? 1_555 ? 45 AC5 9 A A 51 ? A A 65 . ? 1_555 ? 46 AC5 9 A A 52 ? A A 66 . ? 1_555 ? 47 AC5 9 NCO H . ? NCO A 106 . ? 4_445 ? 48 AC5 9 HOH P . ? HOH A 117 . ? 1_555 ? 49 AC5 9 HOH P . ? HOH A 133 . ? 1_555 ? 50 AC5 9 HOH P . ? HOH A 215 . ? 4_445 ? 51 AC6 10 G A 23 ? G A 37 . ? 1_555 ? 52 AC6 10 G A 24 ? G A 38 . ? 1_555 ? 53 AC6 10 G A 43 ? G A 57 . ? 1_555 ? 54 AC6 10 HOH P . ? HOH A 186 . ? 1_555 ? 55 AC6 10 HOH P . ? HOH A 188 . ? 1_555 ? 56 AC6 10 HOH P . ? HOH A 203 . ? 1_555 ? 57 AC6 10 HOH P . ? HOH A 259 . ? 1_555 ? 58 AC6 10 HOH P . ? HOH A 261 . ? 1_555 ? 59 AC6 10 HOH P . ? HOH A 268 . ? 1_555 ? 60 AC6 10 HOH P . ? HOH A 349 . ? 1_555 ? 61 AC7 7 C A 12 ? C A 26 . ? 1_555 ? 62 AC7 7 G A 13 ? G A 27 . ? 1_555 ? 63 AC7 7 U A 16 ? U A 30 . ? 4_455 ? 64 AC7 7 G A 17 ? G A 31 . ? 4_455 ? 65 AC7 7 NCO F . ? NCO A 104 . ? 4_455 ? 66 AC7 7 HOH P . ? HOH A 215 . ? 1_555 ? 67 AC7 7 HOH P . ? HOH A 253 . ? 4_455 ? 68 AC8 5 C A 27 ? C A 41 . ? 1_555 ? 69 AC8 5 G A 28 ? G A 42 . ? 1_555 ? 70 AC8 5 C A 39 ? C A 53 . ? 1_555 ? 71 AC8 5 C A 40 ? C A 54 . ? 1_555 ? 72 AC8 5 HOH P . ? HOH A 113 . ? 1_555 ? 73 AC9 4 G A 32 ? G A 46 . ? 1_555 ? 74 AC9 4 U A 33 ? U A 47 . ? 1_555 ? 75 AC9 4 C A 36 ? C A 50 . ? 1_555 ? 76 AC9 4 HOH P . ? HOH A 232 . ? 1_555 ? 77 BC1 5 A A 10 ? A A 24 . ? 1_555 ? 78 BC1 5 C A 57 ? C A 71 . ? 1_555 ? 79 BC1 5 HOH P . ? HOH A 195 . ? 1_555 ? 80 BC1 5 HOH P . ? HOH A 240 . ? 1_555 ? 81 BC1 5 HOH P . ? HOH A 323 . ? 1_555 ? 82 BC2 2 U A 7 ? U A 21 . ? 1_555 ? 83 BC2 2 U A 8 ? U A 22 . ? 1_555 ? 84 BC3 4 G A 18 ? G A 32 . ? 1_555 ? 85 BC3 4 A A 19 ? A A 33 . ? 1_555 ? 86 BC3 4 HOH P . ? HOH A 181 . ? 1_555 ? 87 BC3 4 HOH P . ? HOH A 184 . ? 1_555 ? 88 BC4 6 U A 22 ? U A 36 . ? 4_456 ? 89 BC4 6 G A 28 ? G A 42 . ? 1_565 ? 90 BC4 6 C A 29 ? C A 43 . ? 1_565 ? 91 BC4 6 G A 58 ? G A 72 . ? 1_555 ? 92 BC4 6 A A 59 ? A A 73 . ? 1_555 ? 93 BC4 6 HOH P . ? HOH A 249 . ? 1_555 ? 94 BC5 8 U A 7 ? U A 21 . ? 1_555 ? 95 BC5 8 U A 8 ? U A 22 . ? 1_555 ? 96 BC5 8 U A 33 ? U A 47 . ? 1_555 ? 97 BC5 8 U A 37 ? U A 51 . ? 1_555 ? 98 BC5 8 A A 38 ? A A 52 . ? 1_555 ? 99 BC5 8 C A 60 ? C A 74 . ? 1_555 ? 100 BC5 8 A A 61 ? A A 75 . ? 1_555 ? 101 BC5 8 HOH P . ? HOH A 131 . ? 1_555 ? # _database_PDB_matrix.entry_id 2EES _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2EES _atom_sites.fract_transf_matrix[1][1] 0.007545 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000173 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027809 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024120 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 15 15 G GUA A . n A 1 2 G 2 16 16 G GUA A . n A 1 3 A 3 17 17 A ADE A . n A 1 4 C 4 18 18 C CYT A . n A 1 5 A 5 19 19 A ADE A . n A 1 6 U 6 20 20 U URI A . n A 1 7 U 7 21 21 U URI A . n A 1 8 U 8 22 22 U URI A . n A 1 9 A 9 23 23 A ADE A . n A 1 10 A 10 24 24 A ADE A . n A 1 11 U 11 25 25 U URI A . n A 1 12 C 12 26 26 C CYT A . n A 1 13 G 13 27 27 G GUA A . n A 1 14 C 14 28 28 C CYT A . n A 1 15 G 15 29 29 G GUA A . n A 1 16 U 16 30 30 U URI A . n A 1 17 G 17 31 31 G GUA A . n A 1 18 G 18 32 32 G GUA A . n A 1 19 A 19 33 33 A ADE A . n A 1 20 U 20 34 34 U URI A . n A 1 21 A 21 35 35 A ADE A . n A 1 22 U 22 36 36 U URI A . n A 1 23 G 23 37 37 G GUA A . n A 1 24 G 24 38 38 G GUA A . n A 1 25 C 25 39 39 C CYT A . n A 1 26 A 26 40 40 A ADE A . n A 1 27 C 27 41 41 C CYT A . n A 1 28 G 28 42 42 G GUA A . n A 1 29 C 29 43 43 C CYT A . n A 1 30 A 30 44 44 A ADE A . n A 1 31 A 31 45 45 A ADE A . n A 1 32 G 32 46 46 G GUA A . n A 1 33 U 33 47 47 U URI A . n A 1 34 U 34 48 48 U URI A . n A 1 35 U 35 49 49 U URI A . n A 1 36 C 36 50 50 C CYT A . n A 1 37 U 37 51 51 U URI A . n A 1 38 A 38 52 52 A ADE A . n A 1 39 C 39 53 53 C CYT A . n A 1 40 C 40 54 54 C CYT A . n A 1 41 G 41 55 55 G GUA A . n A 1 42 G 42 56 56 G GUA A . n A 1 43 G 43 57 57 G GUA A . n A 1 44 C 44 58 58 C CYT A . n A 1 45 A 45 59 59 A ADE A . n A 1 46 C 46 60 60 C CYT A . n A 1 47 C 47 61 61 C CYT A . n A 1 48 G 48 62 62 G GUA A . n A 1 49 U 49 63 63 U URI A . n A 1 50 A 50 64 64 A ADE A . n A 1 51 A 51 65 65 A ADE A . n A 1 52 A 52 66 66 A ADE A . n A 1 53 U 53 67 67 U URI A . n A 1 54 G 54 68 68 G GUA A . n A 1 55 U 55 69 69 U URI A . n A 1 56 C 56 70 70 C CYT A . n A 1 57 C 57 71 71 C CYT A . n A 1 58 G 58 72 72 G GUA A . n A 1 59 A 59 73 73 A ADE A . n A 1 60 C 60 74 74 C CYT A . n A 1 61 A 61 75 75 A ADE A . n A 1 62 A 62 76 76 A ADE A . n A 1 63 U 63 77 77 U URI A . n A 1 64 G 64 78 78 G GUA A . n A 1 65 U 65 79 79 U URI A . n A 1 66 C 66 80 80 C CYT A . n A 1 67 C 67 81 81 C CYT A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT 1 96 96 ACT ACT A . C 3 NCO 1 101 101 NCO NCO A . D 3 NCO 1 102 102 NCO NCO A . E 3 NCO 1 103 103 NCO NCO A . F 3 NCO 1 104 104 NCO NCO A . G 3 NCO 1 105 105 NCO NCO A . H 3 NCO 1 106 106 NCO NCO A . I 3 NCO 1 107 107 NCO NCO A . J 3 NCO 1 108 108 NCO NCO A . K 3 NCO 1 109 109 NCO NCO A . L 3 NCO 1 110 110 NCO NCO A . M 3 NCO 1 111 111 NCO NCO A . N 3 NCO 1 112 112 NCO NCO A . O 4 HPA 1 90 90 HPA HPA A . P 5 HOH 1 113 301 HOH HOH A . P 5 HOH 2 114 302 HOH HOH A . P 5 HOH 3 115 303 HOH HOH A . P 5 HOH 4 116 304 HOH HOH A . P 5 HOH 5 117 305 HOH HOH A . P 5 HOH 6 118 306 HOH HOH A . P 5 HOH 7 119 307 HOH HOH A . P 5 HOH 8 120 308 HOH HOH A . P 5 HOH 9 121 309 HOH HOH A . P 5 HOH 10 122 310 HOH HOH A . P 5 HOH 11 123 311 HOH HOH A . P 5 HOH 12 124 312 HOH HOH A . P 5 HOH 13 125 313 HOH HOH A . P 5 HOH 14 126 314 HOH HOH A . P 5 HOH 15 127 315 HOH HOH A . P 5 HOH 16 128 316 HOH HOH A . P 5 HOH 17 129 317 HOH HOH A . P 5 HOH 18 130 318 HOH HOH A . P 5 HOH 19 131 319 HOH HOH A . P 5 HOH 20 132 320 HOH HOH A . P 5 HOH 21 133 321 HOH HOH A . P 5 HOH 22 134 322 HOH HOH A . P 5 HOH 23 135 323 HOH HOH A . P 5 HOH 24 136 324 HOH HOH A . P 5 HOH 25 137 325 HOH HOH A . P 5 HOH 26 138 326 HOH HOH A . P 5 HOH 27 139 327 HOH HOH A . P 5 HOH 28 140 328 HOH HOH A . P 5 HOH 29 141 329 HOH HOH A . P 5 HOH 30 142 330 HOH HOH A . P 5 HOH 31 143 331 HOH HOH A . P 5 HOH 32 144 332 HOH HOH A . P 5 HOH 33 145 333 HOH HOH A . P 5 HOH 34 146 334 HOH HOH A . P 5 HOH 35 147 335 HOH HOH A . P 5 HOH 36 148 336 HOH HOH A . P 5 HOH 37 149 337 HOH HOH A . P 5 HOH 38 150 338 HOH HOH A . P 5 HOH 39 151 339 HOH HOH A . P 5 HOH 40 152 340 HOH HOH A . P 5 HOH 41 153 341 HOH HOH A . P 5 HOH 42 154 342 HOH HOH A . P 5 HOH 43 155 343 HOH HOH A . P 5 HOH 44 156 344 HOH HOH A . P 5 HOH 45 157 345 HOH HOH A . P 5 HOH 46 158 346 HOH HOH A . P 5 HOH 47 159 347 HOH HOH A . P 5 HOH 48 160 348 HOH HOH A . P 5 HOH 49 161 349 HOH HOH A . P 5 HOH 50 162 350 HOH HOH A . P 5 HOH 51 163 351 HOH HOH A . P 5 HOH 52 164 352 HOH HOH A . P 5 HOH 53 165 353 HOH HOH A . P 5 HOH 54 166 354 HOH HOH A . P 5 HOH 55 167 355 HOH HOH A . P 5 HOH 56 168 356 HOH HOH A . P 5 HOH 57 169 357 HOH HOH A . P 5 HOH 58 170 358 HOH HOH A . P 5 HOH 59 171 359 HOH HOH A . P 5 HOH 60 172 360 HOH HOH A . P 5 HOH 61 173 361 HOH HOH A . P 5 HOH 62 174 362 HOH HOH A . P 5 HOH 63 175 363 HOH HOH A . P 5 HOH 64 176 364 HOH HOH A . P 5 HOH 65 177 365 HOH HOH A . P 5 HOH 66 178 366 HOH HOH A . P 5 HOH 67 179 367 HOH HOH A . P 5 HOH 68 180 368 HOH HOH A . P 5 HOH 69 181 369 HOH HOH A . P 5 HOH 70 182 370 HOH HOH A . P 5 HOH 71 183 371 HOH HOH A . P 5 HOH 72 184 372 HOH HOH A . P 5 HOH 73 185 373 HOH HOH A . P 5 HOH 74 186 374 HOH HOH A . P 5 HOH 75 187 375 HOH HOH A . P 5 HOH 76 188 376 HOH HOH A . P 5 HOH 77 189 377 HOH HOH A . P 5 HOH 78 190 378 HOH HOH A . P 5 HOH 79 191 379 HOH HOH A . P 5 HOH 80 192 380 HOH HOH A . P 5 HOH 81 193 382 HOH HOH A . P 5 HOH 82 194 383 HOH HOH A . P 5 HOH 83 195 384 HOH HOH A . P 5 HOH 84 196 385 HOH HOH A . P 5 HOH 85 197 386 HOH HOH A . P 5 HOH 86 198 387 HOH HOH A . P 5 HOH 87 199 388 HOH HOH A . P 5 HOH 88 200 389 HOH HOH A . P 5 HOH 89 201 390 HOH HOH A . P 5 HOH 90 202 391 HOH HOH A . P 5 HOH 91 203 392 HOH HOH A . P 5 HOH 92 204 393 HOH HOH A . P 5 HOH 93 205 394 HOH HOH A . P 5 HOH 94 206 395 HOH HOH A . P 5 HOH 95 207 396 HOH HOH A . P 5 HOH 96 208 397 HOH HOH A . P 5 HOH 97 209 398 HOH HOH A . P 5 HOH 98 210 399 HOH HOH A . P 5 HOH 99 211 400 HOH HOH A . P 5 HOH 100 212 401 HOH HOH A . P 5 HOH 101 213 402 HOH HOH A . P 5 HOH 102 214 403 HOH HOH A . P 5 HOH 103 215 404 HOH HOH A . P 5 HOH 104 216 405 HOH HOH A . P 5 HOH 105 217 406 HOH HOH A . P 5 HOH 106 218 407 HOH HOH A . P 5 HOH 107 219 408 HOH HOH A . P 5 HOH 108 220 409 HOH HOH A . P 5 HOH 109 221 410 HOH HOH A . P 5 HOH 110 222 411 HOH HOH A . P 5 HOH 111 223 412 HOH HOH A . P 5 HOH 112 224 413 HOH HOH A . P 5 HOH 113 225 414 HOH HOH A . P 5 HOH 114 226 415 HOH HOH A . P 5 HOH 115 227 416 HOH HOH A . P 5 HOH 116 228 417 HOH HOH A . P 5 HOH 117 229 418 HOH HOH A . P 5 HOH 118 230 419 HOH HOH A . P 5 HOH 119 231 420 HOH HOH A . P 5 HOH 120 232 421 HOH HOH A . P 5 HOH 121 233 422 HOH HOH A . P 5 HOH 122 234 423 HOH HOH A . P 5 HOH 123 235 424 HOH HOH A . P 5 HOH 124 236 425 HOH HOH A . P 5 HOH 125 237 426 HOH HOH A . P 5 HOH 126 238 427 HOH HOH A . P 5 HOH 127 239 428 HOH HOH A . P 5 HOH 128 240 429 HOH HOH A . P 5 HOH 129 241 430 HOH HOH A . P 5 HOH 130 242 431 HOH HOH A . P 5 HOH 131 243 432 HOH HOH A . P 5 HOH 132 244 433 HOH HOH A . P 5 HOH 133 245 434 HOH HOH A . P 5 HOH 134 246 435 HOH HOH A . P 5 HOH 135 247 436 HOH HOH A . P 5 HOH 136 248 437 HOH HOH A . P 5 HOH 137 249 438 HOH HOH A . P 5 HOH 138 250 439 HOH HOH A . P 5 HOH 139 251 440 HOH HOH A . P 5 HOH 140 252 441 HOH HOH A . P 5 HOH 141 253 442 HOH HOH A . P 5 HOH 142 254 443 HOH HOH A . P 5 HOH 143 255 444 HOH HOH A . P 5 HOH 144 256 445 HOH HOH A . P 5 HOH 145 257 446 HOH HOH A . P 5 HOH 146 258 447 HOH HOH A . P 5 HOH 147 259 448 HOH HOH A . P 5 HOH 148 260 449 HOH HOH A . P 5 HOH 149 261 450 HOH HOH A . P 5 HOH 150 262 451 HOH HOH A . P 5 HOH 151 263 452 HOH HOH A . P 5 HOH 152 264 453 HOH HOH A . P 5 HOH 153 265 454 HOH HOH A . P 5 HOH 154 266 455 HOH HOH A . P 5 HOH 155 267 456 HOH HOH A . P 5 HOH 156 268 457 HOH HOH A . P 5 HOH 157 269 458 HOH HOH A . P 5 HOH 158 270 459 HOH HOH A . P 5 HOH 159 271 460 HOH HOH A . P 5 HOH 160 272 461 HOH HOH A . P 5 HOH 161 273 462 HOH HOH A . P 5 HOH 162 274 463 HOH HOH A . P 5 HOH 163 275 464 HOH HOH A . P 5 HOH 164 276 465 HOH HOH A . P 5 HOH 165 277 466 HOH HOH A . P 5 HOH 166 278 467 HOH HOH A . P 5 HOH 167 279 468 HOH HOH A . P 5 HOH 168 280 469 HOH HOH A . P 5 HOH 169 281 470 HOH HOH A . P 5 HOH 170 282 471 HOH HOH A . P 5 HOH 171 283 472 HOH HOH A . P 5 HOH 172 284 473 HOH HOH A . P 5 HOH 173 285 474 HOH HOH A . P 5 HOH 174 286 475 HOH HOH A . P 5 HOH 175 287 476 HOH HOH A . P 5 HOH 176 288 477 HOH HOH A . P 5 HOH 177 289 478 HOH HOH A . P 5 HOH 178 290 479 HOH HOH A . P 5 HOH 179 291 480 HOH HOH A . P 5 HOH 180 292 481 HOH HOH A . P 5 HOH 181 293 482 HOH HOH A . P 5 HOH 182 294 483 HOH HOH A . P 5 HOH 183 295 484 HOH HOH A . P 5 HOH 184 296 485 HOH HOH A . P 5 HOH 185 297 486 HOH HOH A . P 5 HOH 186 298 487 HOH HOH A . P 5 HOH 187 299 488 HOH HOH A . P 5 HOH 188 300 489 HOH HOH A . P 5 HOH 189 301 490 HOH HOH A . P 5 HOH 190 302 491 HOH HOH A . P 5 HOH 191 303 492 HOH HOH A . P 5 HOH 192 304 493 HOH HOH A . P 5 HOH 193 305 494 HOH HOH A . P 5 HOH 194 306 495 HOH HOH A . P 5 HOH 195 307 496 HOH HOH A . P 5 HOH 196 308 497 HOH HOH A . P 5 HOH 197 309 498 HOH HOH A . P 5 HOH 198 310 499 HOH HOH A . P 5 HOH 199 311 500 HOH HOH A . P 5 HOH 200 312 501 HOH HOH A . P 5 HOH 201 313 502 HOH HOH A . P 5 HOH 202 314 503 HOH HOH A . P 5 HOH 203 315 504 HOH HOH A . P 5 HOH 204 316 505 HOH HOH A . P 5 HOH 205 317 506 HOH HOH A . P 5 HOH 206 318 507 HOH HOH A . P 5 HOH 207 319 508 HOH HOH A . P 5 HOH 208 320 509 HOH HOH A . P 5 HOH 209 321 510 HOH HOH A . P 5 HOH 210 322 511 HOH HOH A . P 5 HOH 211 323 512 HOH HOH A . P 5 HOH 212 324 513 HOH HOH A . P 5 HOH 213 325 514 HOH HOH A . P 5 HOH 214 326 515 HOH HOH A . P 5 HOH 215 327 516 HOH HOH A . P 5 HOH 216 328 517 HOH HOH A . P 5 HOH 217 329 518 HOH HOH A . P 5 HOH 218 330 519 HOH HOH A . P 5 HOH 219 331 520 HOH HOH A . P 5 HOH 220 332 521 HOH HOH A . P 5 HOH 221 333 522 HOH HOH A . P 5 HOH 222 334 523 HOH HOH A . P 5 HOH 223 335 524 HOH HOH A . P 5 HOH 224 336 525 HOH HOH A . P 5 HOH 225 337 526 HOH HOH A . P 5 HOH 226 338 527 HOH HOH A . P 5 HOH 227 339 528 HOH HOH A . P 5 HOH 228 340 529 HOH HOH A . P 5 HOH 229 341 530 HOH HOH A . P 5 HOH 230 342 531 HOH HOH A . P 5 HOH 231 343 532 HOH HOH A . P 5 HOH 232 344 533 HOH HOH A . P 5 HOH 233 345 534 HOH HOH A . P 5 HOH 234 346 535 HOH HOH A . P 5 HOH 235 347 536 HOH HOH A . P 5 HOH 236 348 537 HOH HOH A . P 5 HOH 237 349 538 HOH HOH A . P 5 HOH 238 350 539 HOH HOH A . P 5 HOH 239 351 540 HOH HOH A . P 5 HOH 240 352 541 HOH HOH A . P 5 HOH 241 353 542 HOH HOH A . P 5 HOH 242 354 543 HOH HOH A . P 5 HOH 243 355 544 HOH HOH A . P 5 HOH 244 356 545 HOH HOH A . P 5 HOH 245 357 546 HOH HOH A . P 5 HOH 246 358 547 HOH HOH A . P 5 HOH 247 359 548 HOH HOH A . P 5 HOH 248 360 549 HOH HOH A . P 5 HOH 249 361 550 HOH HOH A . P 5 HOH 250 362 551 HOH HOH A . P 5 HOH 251 363 552 HOH HOH A . P 5 HOH 252 364 553 HOH HOH A . P 5 HOH 253 365 554 HOH HOH A . P 5 HOH 254 366 555 HOH HOH A . P 5 HOH 255 367 556 HOH HOH A . P 5 HOH 256 368 557 HOH HOH A . P 5 HOH 257 369 558 HOH HOH A . P 5 HOH 258 370 559 HOH HOH A . P 5 HOH 259 371 560 HOH HOH A . P 5 HOH 260 372 561 HOH HOH A . P 5 HOH 261 373 562 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-11-13 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 CrystalClear 'data collection' . ? 2 d*TREK 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 CNS phasing . ? 5 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE Residues U21 and A75 were engineered from A and U, respectively, based on the guanine riboswitch found in the 5'UTR of the xpt-pbuX gene in Bacillus subtilis. ; # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 N2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 NCO _pdbx_validate_close_contact.auth_seq_id_1 105 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 268 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C2 A G 29 ? ? N2 A G 29 ? ? 1.409 1.341 0.068 0.010 N 2 1 N7 A G 31 ? ? C8 A G 31 ? ? 1.348 1.305 0.043 0.006 N 3 1 N9 A G 31 ? ? C4 A G 31 ? ? 1.427 1.375 0.052 0.008 N 4 1 C2 A G 31 ? ? N2 A G 31 ? ? 1.404 1.341 0.063 0.010 N 5 1 C2 A G 32 ? ? N3 A G 32 ? ? 1.381 1.323 0.058 0.008 N 6 1 "O3'" A A 33 ? ? P A U 34 ? ? 1.532 1.607 -0.075 0.012 Y 7 1 C6 A G 37 ? ? N1 A G 37 ? ? 1.436 1.391 0.045 0.007 N 8 1 C2 A G 37 ? ? N2 A G 37 ? ? 1.418 1.341 0.077 0.010 N 9 1 "O5'" A C 39 ? ? "C5'" A C 39 ? ? 1.314 1.420 -0.106 0.009 N 10 1 C2 A C 39 ? ? O2 A C 39 ? ? 1.329 1.240 0.089 0.009 N 11 1 C8 A A 40 ? ? N9 A A 40 ? ? 1.428 1.373 0.055 0.008 N 12 1 C4 A C 43 ? ? N4 A C 43 ? ? 1.398 1.335 0.063 0.009 N 13 1 "O5'" A U 51 ? ? "C5'" A U 51 ? ? 1.365 1.420 -0.055 0.009 N 14 1 N7 A G 57 ? ? C8 A G 57 ? ? 1.348 1.305 0.043 0.006 N 15 1 C4 A C 58 ? ? N4 A C 58 ? ? 1.391 1.335 0.056 0.009 N 16 1 C2 A C 60 ? ? O2 A C 60 ? ? 1.295 1.240 0.055 0.009 N 17 1 C4 A C 60 ? ? N4 A C 60 ? ? 1.392 1.335 0.057 0.009 N 18 1 C4 A C 61 ? ? N4 A C 61 ? ? 1.392 1.335 0.057 0.009 N 19 1 C6 A A 66 ? ? N1 A A 66 ? ? 1.397 1.351 0.046 0.007 N 20 1 C6 A G 72 ? ? O6 A G 72 ? ? 1.292 1.237 0.055 0.009 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A U 25 ? ? P A U 25 ? ? OP2 A U 25 ? ? 100.19 105.70 -5.51 0.90 N 2 1 "O5'" A C 39 ? ? P A C 39 ? ? OP2 A C 39 ? ? 94.35 105.70 -11.35 0.90 N 3 1 "C5'" A C 39 ? ? "C4'" A C 39 ? ? "C3'" A C 39 ? ? 141.15 116.00 25.15 1.60 N 4 1 "C2'" A C 50 ? ? "C3'" A C 50 ? ? "O3'" A C 50 ? ? 128.22 113.70 14.52 1.60 N 5 1 "O5'" A C 54 ? ? P A C 54 ? ? OP2 A C 54 ? ? 100.21 105.70 -5.49 0.90 N 6 1 "C5'" A C 54 ? ? "C4'" A C 54 ? ? "C3'" A C 54 ? ? 137.01 116.00 21.01 1.60 N 7 1 "C2'" A U 63 ? ? "C3'" A U 63 ? ? "O3'" A U 63 ? ? 126.35 113.70 12.65 1.60 N 8 1 "O3'" A U 63 ? ? P A A 64 ? ? OP1 A A 64 ? ? 119.52 110.50 9.02 1.10 Y # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 U A 34 ? ? 0.089 'SIDE CHAIN' 2 1 G A 38 ? ? 0.099 'SIDE CHAIN' 3 1 A A 40 ? ? 0.065 'SIDE CHAIN' 4 1 A A 45 ? ? 0.080 'SIDE CHAIN' 5 1 G A 46 ? ? 0.058 'SIDE CHAIN' 6 1 C A 61 ? ? 0.065 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ACT C C N N 38 ACT O O N N 39 ACT OXT O N N 40 ACT CH3 C N N 41 ACT H1 H N N 42 ACT H2 H N N 43 ACT H3 H N N 44 C OP3 O N N 45 C P P N N 46 C OP1 O N N 47 C OP2 O N N 48 C "O5'" O N N 49 C "C5'" C N N 50 C "C4'" C N R 51 C "O4'" O N N 52 C "C3'" C N S 53 C "O3'" O N N 54 C "C2'" C N R 55 C "O2'" O N N 56 C "C1'" C N R 57 C N1 N N N 58 C C2 C N N 59 C O2 O N N 60 C N3 N N N 61 C C4 C N N 62 C N4 N N N 63 C C5 C N N 64 C C6 C N N 65 C HOP3 H N N 66 C HOP2 H N N 67 C "H5'" H N N 68 C "H5''" H N N 69 C "H4'" H N N 70 C "H3'" H N N 71 C "HO3'" H N N 72 C "H2'" H N N 73 C "HO2'" H N N 74 C "H1'" H N N 75 C H41 H N N 76 C H42 H N N 77 C H5 H N N 78 C H6 H N N 79 G OP3 O N N 80 G P P N N 81 G OP1 O N N 82 G OP2 O N N 83 G "O5'" O N N 84 G "C5'" C N N 85 G "C4'" C N R 86 G "O4'" O N N 87 G "C3'" C N S 88 G "O3'" O N N 89 G "C2'" C N R 90 G "O2'" O N N 91 G "C1'" C N R 92 G N9 N Y N 93 G C8 C Y N 94 G N7 N Y N 95 G C5 C Y N 96 G C6 C N N 97 G O6 O N N 98 G N1 N N N 99 G C2 C N N 100 G N2 N N N 101 G N3 N N N 102 G C4 C Y N 103 G HOP3 H N N 104 G HOP2 H N N 105 G "H5'" H N N 106 G "H5''" H N N 107 G "H4'" H N N 108 G "H3'" H N N 109 G "HO3'" H N N 110 G "H2'" H N N 111 G "HO2'" H N N 112 G "H1'" H N N 113 G H8 H N N 114 G H1 H N N 115 G H21 H N N 116 G H22 H N N 117 HOH O O N N 118 HOH H1 H N N 119 HOH H2 H N N 120 HPA N1 N Y N 121 HPA C2 C Y N 122 HPA N3 N Y N 123 HPA C4 C Y N 124 HPA C5 C Y N 125 HPA C6 C Y N 126 HPA O6 O N N 127 HPA N7 N Y N 128 HPA C8 C Y N 129 HPA N9 N Y N 130 HPA HN1 H N N 131 HPA H2 H N N 132 HPA HN7 H N N 133 HPA H8 H N N 134 NCO CO CO N N 135 NCO N1 N N N 136 NCO N2 N N N 137 NCO N3 N N N 138 NCO N4 N N N 139 NCO N5 N N N 140 NCO N6 N N N 141 NCO HN11 H N N 142 NCO HN12 H N N 143 NCO HN13 H N N 144 NCO HN21 H N N 145 NCO HN22 H N N 146 NCO HN23 H N N 147 NCO HN31 H N N 148 NCO HN32 H N N 149 NCO HN33 H N N 150 NCO HN41 H N N 151 NCO HN42 H N N 152 NCO HN43 H N N 153 NCO HN51 H N N 154 NCO HN52 H N N 155 NCO HN53 H N N 156 NCO HN61 H N N 157 NCO HN62 H N N 158 NCO HN63 H N N 159 U OP3 O N N 160 U P P N N 161 U OP1 O N N 162 U OP2 O N N 163 U "O5'" O N N 164 U "C5'" C N N 165 U "C4'" C N R 166 U "O4'" O N N 167 U "C3'" C N S 168 U "O3'" O N N 169 U "C2'" C N R 170 U "O2'" O N N 171 U "C1'" C N R 172 U N1 N N N 173 U C2 C N N 174 U O2 O N N 175 U N3 N N N 176 U C4 C N N 177 U O4 O N N 178 U C5 C N N 179 U C6 C N N 180 U HOP3 H N N 181 U HOP2 H N N 182 U "H5'" H N N 183 U "H5''" H N N 184 U "H4'" H N N 185 U "H3'" H N N 186 U "HO3'" H N N 187 U "H2'" H N N 188 U "HO2'" H N N 189 U "H1'" H N N 190 U H3 H N N 191 U H5 H N N 192 U H6 H N N 193 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ACT C O doub N N 40 ACT C OXT sing N N 41 ACT C CH3 sing N N 42 ACT CH3 H1 sing N N 43 ACT CH3 H2 sing N N 44 ACT CH3 H3 sing N N 45 C OP3 P sing N N 46 C OP3 HOP3 sing N N 47 C P OP1 doub N N 48 C P OP2 sing N N 49 C P "O5'" sing N N 50 C OP2 HOP2 sing N N 51 C "O5'" "C5'" sing N N 52 C "C5'" "C4'" sing N N 53 C "C5'" "H5'" sing N N 54 C "C5'" "H5''" sing N N 55 C "C4'" "O4'" sing N N 56 C "C4'" "C3'" sing N N 57 C "C4'" "H4'" sing N N 58 C "O4'" "C1'" sing N N 59 C "C3'" "O3'" sing N N 60 C "C3'" "C2'" sing N N 61 C "C3'" "H3'" sing N N 62 C "O3'" "HO3'" sing N N 63 C "C2'" "O2'" sing N N 64 C "C2'" "C1'" sing N N 65 C "C2'" "H2'" sing N N 66 C "O2'" "HO2'" sing N N 67 C "C1'" N1 sing N N 68 C "C1'" "H1'" sing N N 69 C N1 C2 sing N N 70 C N1 C6 sing N N 71 C C2 O2 doub N N 72 C C2 N3 sing N N 73 C N3 C4 doub N N 74 C C4 N4 sing N N 75 C C4 C5 sing N N 76 C N4 H41 sing N N 77 C N4 H42 sing N N 78 C C5 C6 doub N N 79 C C5 H5 sing N N 80 C C6 H6 sing N N 81 G OP3 P sing N N 82 G OP3 HOP3 sing N N 83 G P OP1 doub N N 84 G P OP2 sing N N 85 G P "O5'" sing N N 86 G OP2 HOP2 sing N N 87 G "O5'" "C5'" sing N N 88 G "C5'" "C4'" sing N N 89 G "C5'" "H5'" sing N N 90 G "C5'" "H5''" sing N N 91 G "C4'" "O4'" sing N N 92 G "C4'" "C3'" sing N N 93 G "C4'" "H4'" sing N N 94 G "O4'" "C1'" sing N N 95 G "C3'" "O3'" sing N N 96 G "C3'" "C2'" sing N N 97 G "C3'" "H3'" sing N N 98 G "O3'" "HO3'" sing N N 99 G "C2'" "O2'" sing N N 100 G "C2'" "C1'" sing N N 101 G "C2'" "H2'" sing N N 102 G "O2'" "HO2'" sing N N 103 G "C1'" N9 sing N N 104 G "C1'" "H1'" sing N N 105 G N9 C8 sing Y N 106 G N9 C4 sing Y N 107 G C8 N7 doub Y N 108 G C8 H8 sing N N 109 G N7 C5 sing Y N 110 G C5 C6 sing N N 111 G C5 C4 doub Y N 112 G C6 O6 doub N N 113 G C6 N1 sing N N 114 G N1 C2 sing N N 115 G N1 H1 sing N N 116 G C2 N2 sing N N 117 G C2 N3 doub N N 118 G N2 H21 sing N N 119 G N2 H22 sing N N 120 G N3 C4 sing N N 121 HOH O H1 sing N N 122 HOH O H2 sing N N 123 HPA N1 C2 sing Y N 124 HPA N1 C6 sing Y N 125 HPA N1 HN1 sing N N 126 HPA C2 N3 doub Y N 127 HPA C2 H2 sing N N 128 HPA N3 C4 sing Y N 129 HPA C4 C5 doub Y N 130 HPA C4 N9 sing Y N 131 HPA C5 C6 sing Y N 132 HPA C5 N7 sing Y N 133 HPA C6 O6 doub N N 134 HPA N7 C8 sing Y N 135 HPA N7 HN7 sing N N 136 HPA C8 N9 doub Y N 137 HPA C8 H8 sing N N 138 NCO CO N1 sing N N 139 NCO CO N2 sing N N 140 NCO CO N3 sing N N 141 NCO CO N4 sing N N 142 NCO CO N5 sing N N 143 NCO CO N6 sing N N 144 NCO N1 HN11 sing N N 145 NCO N1 HN12 sing N N 146 NCO N1 HN13 sing N N 147 NCO N2 HN21 sing N N 148 NCO N2 HN22 sing N N 149 NCO N2 HN23 sing N N 150 NCO N3 HN31 sing N N 151 NCO N3 HN32 sing N N 152 NCO N3 HN33 sing N N 153 NCO N4 HN41 sing N N 154 NCO N4 HN42 sing N N 155 NCO N4 HN43 sing N N 156 NCO N5 HN51 sing N N 157 NCO N5 HN52 sing N N 158 NCO N5 HN53 sing N N 159 NCO N6 HN61 sing N N 160 NCO N6 HN62 sing N N 161 NCO N6 HN63 sing N N 162 U OP3 P sing N N 163 U OP3 HOP3 sing N N 164 U P OP1 doub N N 165 U P OP2 sing N N 166 U P "O5'" sing N N 167 U OP2 HOP2 sing N N 168 U "O5'" "C5'" sing N N 169 U "C5'" "C4'" sing N N 170 U "C5'" "H5'" sing N N 171 U "C5'" "H5''" sing N N 172 U "C4'" "O4'" sing N N 173 U "C4'" "C3'" sing N N 174 U "C4'" "H4'" sing N N 175 U "O4'" "C1'" sing N N 176 U "C3'" "O3'" sing N N 177 U "C3'" "C2'" sing N N 178 U "C3'" "H3'" sing N N 179 U "O3'" "HO3'" sing N N 180 U "C2'" "O2'" sing N N 181 U "C2'" "C1'" sing N N 182 U "C2'" "H2'" sing N N 183 U "O2'" "HO2'" sing N N 184 U "C1'" N1 sing N N 185 U "C1'" "H1'" sing N N 186 U N1 C2 sing N N 187 U N1 C6 sing N N 188 U C2 O2 doub N N 189 U C2 N3 sing N N 190 U N3 C4 sing N N 191 U N3 H3 sing N N 192 U C4 O4 doub N N 193 U C4 C5 sing N N 194 U C5 C6 doub N N 195 U C5 H5 sing N N 196 U C6 H6 sing N N 197 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2EES 'double helix' 2EES 'a-form double helix' 2EES 'mismatched base pair' 2EES 'internal loop' 2EES 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 A C 66 1_555 -0.356 -0.402 -1.000 10.611 -38.158 -2.017 1 A_G16:C80_A A 16 ? A 80 ? ? ? 1 A A 3 1_555 A U 65 1_555 0.151 0.058 0.339 -13.122 -4.409 2.628 2 A_A17:U79_A A 17 ? A 79 ? 20 1 1 A C 4 1_555 A G 64 1_555 0.091 -0.094 0.321 2.564 -12.448 1.803 3 A_C18:G78_A A 18 ? A 78 ? 19 1 1 A A 5 1_555 A U 63 1_555 -0.049 0.085 0.000 -0.870 -14.398 -0.213 4 A_A19:U77_A A 19 ? A 77 ? 20 1 1 A U 6 1_555 A A 62 1_555 0.264 0.044 -0.058 -6.705 -20.691 2.393 5 A_U20:A76_A A 20 ? A 76 ? 20 1 1 A U 7 1_555 A A 61 1_555 0.142 -0.088 0.263 -3.645 -13.024 1.780 6 A_U21:A75_A A 21 ? A 75 ? 20 1 1 A U 37 1_555 A U 33 1_555 -3.621 -0.430 0.902 -24.134 42.226 -75.820 7 A_U51:U47_A A 51 ? A 47 ? ? ? 1 A A 38 1_555 A U 8 1_555 0.077 -0.031 -0.220 -12.712 4.631 0.252 8 A_A52:U22_A A 52 ? A 22 ? 20 1 1 A C 39 1_555 A G 32 1_555 0.142 0.063 -0.309 19.396 1.349 -1.063 9 A_C53:G46_A A 53 ? A 46 ? 19 1 1 A U 11 1_555 A A 31 1_555 -0.210 0.048 -0.081 5.733 -11.212 3.209 10 A_U25:A45_A A 25 ? A 45 ? 20 1 1 A C 12 1_555 A A 30 1_555 -1.632 0.444 0.048 1.063 -14.797 6.857 11 A_C26:A44_A A 26 ? A 44 ? ? ? 1 A G 13 1_555 A C 29 1_555 -0.018 -0.024 -0.007 -4.163 -8.483 -3.008 12 A_G27:C43_A A 27 ? A 43 ? 19 1 1 A C 14 1_555 A G 28 1_555 0.160 -0.046 -0.024 2.893 -7.008 -0.351 13 A_C28:G42_A A 28 ? A 42 ? 19 1 1 A G 15 1_555 A C 27 1_555 -0.331 -0.207 0.264 3.397 -7.908 -2.967 14 A_G29:C41_A A 29 ? A 41 ? 19 1 1 A U 16 1_555 A A 26 1_555 -0.163 0.028 0.133 1.210 -3.224 3.701 15 A_U30:A40_A A 30 ? A 40 ? 20 1 1 A G 17 1_555 A C 25 1_555 -0.205 -0.030 -0.029 2.972 -6.356 0.648 16 A_G31:C39_A A 31 ? A 39 ? 19 1 1 A C 40 1_555 A G 58 1_555 0.158 0.043 0.002 -3.205 -13.795 -0.095 17 A_C54:G72_A A 54 ? A 72 ? 19 1 1 A G 41 1_555 A C 57 1_555 -0.050 -0.018 0.082 -7.152 -11.405 -3.536 18 A_G55:C71_A A 55 ? A 71 ? 19 1 1 A G 42 1_555 A C 56 1_555 -0.254 -0.149 0.019 -3.658 -15.154 -2.604 19 A_G56:C70_A A 56 ? A 70 ? 19 1 1 A G 43 1_555 A U 55 1_555 -2.240 -0.565 0.002 -1.579 -17.196 -7.969 20 A_G57:U69_A A 57 ? A 69 ? 28 ? 1 A C 44 1_555 A G 54 1_555 0.038 -0.126 0.040 4.723 -15.646 -0.099 21 A_C58:G68_A A 58 ? A 68 ? 19 1 1 A A 45 1_555 A U 53 1_555 0.026 0.041 0.003 -2.753 -7.710 0.959 22 A_A59:U67_A A 59 ? A 67 ? 20 1 1 A C 46 1_555 A G 24 1_555 0.128 -0.002 0.244 -13.052 -14.770 -0.418 23 A_C60:G38_A A 60 ? A 38 ? 19 1 1 A C 47 1_555 A G 23 1_555 0.212 -0.142 0.473 -3.831 -12.496 -5.178 24 A_C61:G37_A A 61 ? A 37 ? 19 1 1 A A 50 1_555 A A 21 1_555 4.401 1.465 0.553 5.209 7.807 -111.729 25 A_A64:A35_A A 64 ? A 35 ? 5 4 1 A G 48 1_555 A U 49 1_555 8.153 1.710 0.520 0.132 9.389 18.463 26 A_G62:U63_A A 62 ? A 63 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 A C 66 1_555 A A 3 1_555 A U 65 1_555 -0.027 -1.121 3.786 -15.255 20.023 37.143 -3.487 -1.497 2.700 27.866 21.231 44.619 1 AA_G16A17:U79C80_AA A 16 ? A 80 ? A 17 ? A 79 ? 1 A A 3 1_555 A U 65 1_555 A C 4 1_555 A G 64 1_555 0.100 -1.973 2.804 1.303 1.452 32.630 -3.718 0.012 2.718 2.581 -2.316 32.686 2 AA_A17C18:G78U79_AA A 17 ? A 79 ? A 18 ? A 78 ? 1 A C 4 1_555 A G 64 1_555 A A 5 1_555 A U 63 1_555 -0.569 -1.636 3.210 0.532 8.898 30.937 -4.405 1.114 2.640 16.262 -0.972 32.165 3 AA_C18A19:U77G78_AA A 18 ? A 78 ? A 19 ? A 77 ? 1 A A 5 1_555 A U 63 1_555 A U 6 1_555 A A 62 1_555 0.069 -1.306 3.404 2.568 13.384 33.244 -3.983 0.245 2.694 22.265 -4.271 35.856 4 AA_A19U20:A76U77_AA A 19 ? A 77 ? A 20 ? A 76 ? 1 A U 6 1_555 A A 62 1_555 A U 7 1_555 A A 61 1_555 0.902 -1.634 3.203 1.127 11.030 29.312 -4.902 -1.481 2.473 20.880 -2.134 31.296 5 AA_U20U21:A75A76_AA A 20 ? A 76 ? A 21 ? A 75 ? 1 A U 7 1_555 A A 61 1_555 A U 37 1_555 A U 33 1_555 -2.356 6.069 2.152 20.966 2.445 159.160 3.080 1.233 2.096 1.243 -10.655 159.517 6 AA_U21U51:U47A75_AA A 21 ? A 75 ? A 51 ? A 47 ? 1 A U 37 1_555 A U 33 1_555 A A 38 1_555 A U 8 1_555 -0.048 -1.063 3.360 0.207 24.741 1.295 -7.950 0.158 -0.885 87.048 -0.727 24.776 7 AA_U51A52:U22U47_AA A 51 ? A 47 ? A 52 ? A 22 ? 1 A A 38 1_555 A U 8 1_555 A C 39 1_555 A G 32 1_555 2.184 0.300 2.633 1.133 9.237 45.895 -0.254 -2.673 2.692 11.704 -1.436 46.779 8 AA_A52C53:G46U22_AA A 52 ? A 22 ? A 53 ? A 46 ? 1 A C 39 1_555 A G 32 1_555 A U 11 1_555 A A 31 1_555 -1.801 -0.134 3.337 -11.900 3.113 55.439 -0.328 1.183 3.611 3.301 12.619 56.681 9 AA_C53U25:A45G46_AA A 53 ? A 46 ? A 25 ? A 45 ? 1 A U 11 1_555 A A 31 1_555 A C 12 1_555 A A 30 1_555 -0.368 -2.501 3.173 -3.691 8.610 26.024 -7.035 0.000 2.274 18.378 7.879 27.631 10 AA_U25C26:A44A45_AA A 25 ? A 45 ? A 26 ? A 44 ? 1 A C 12 1_555 A A 30 1_555 A G 13 1_555 A C 29 1_555 -0.232 -1.847 3.342 -0.586 9.722 35.331 -4.210 0.292 2.758 15.654 0.944 36.608 11 AA_C26G27:C43A44_AA A 26 ? A 44 ? A 27 ? A 43 ? 1 A G 13 1_555 A C 29 1_555 A C 14 1_555 A G 28 1_555 0.899 -2.629 3.042 2.158 4.119 25.275 -6.931 -1.489 2.653 9.314 -4.879 25.693 12 AA_G27C28:G42C43_AA A 27 ? A 43 ? A 28 ? A 42 ? 1 A C 14 1_555 A G 28 1_555 A G 15 1_555 A C 27 1_555 -0.962 -2.127 3.049 -3.490 8.376 27.888 -5.758 1.256 2.422 16.824 7.009 29.300 13 AA_C28G29:C41G42_AA A 28 ? A 42 ? A 29 ? A 41 ? 1 A G 15 1_555 A C 27 1_555 A U 16 1_555 A A 26 1_555 0.227 -1.407 3.339 0.419 5.626 32.643 -3.404 -0.328 3.063 9.918 -0.738 33.114 14 AA_G29U30:A40C41_AA A 29 ? A 41 ? A 30 ? A 40 ? 1 A U 16 1_555 A A 26 1_555 A G 17 1_555 A C 25 1_555 0.778 -1.868 3.155 1.341 4.882 31.976 -4.150 -1.176 2.875 8.793 -2.416 32.364 15 AA_U30G31:C39A40_AA A 30 ? A 40 ? A 31 ? A 39 ? 1 A C 40 1_555 A G 58 1_555 A G 41 1_555 A C 57 1_555 -0.831 -1.856 3.212 0.299 9.963 32.414 -4.628 1.470 2.539 17.343 -0.520 33.873 16 AA_C54G55:C71G72_AA A 54 ? A 72 ? A 55 ? A 71 ? 1 A G 41 1_555 A C 57 1_555 A G 42 1_555 A C 56 1_555 -0.290 -0.846 3.204 0.155 6.557 31.449 -2.652 0.552 2.971 11.935 -0.282 32.109 17 AA_G55G56:C70C71_AA A 55 ? A 71 ? A 56 ? A 70 ? 1 A G 42 1_555 A C 56 1_555 A G 43 1_555 A U 55 1_555 -0.050 -1.321 3.061 -3.849 8.319 28.101 -4.150 -0.622 2.558 16.583 7.673 29.529 18 AA_G56G57:U69C70_AA A 56 ? A 70 ? A 57 ? A 69 ? 1 A G 43 1_555 A U 55 1_555 A C 44 1_555 A G 54 1_555 0.628 -1.128 3.064 -1.416 3.684 42.263 -1.903 -0.999 2.939 5.096 1.959 42.439 19 AA_G57C58:G68U69_AA A 57 ? A 69 ? A 58 ? A 68 ? 1 A C 44 1_555 A G 54 1_555 A A 45 1_555 A U 53 1_555 0.531 -1.727 3.456 -0.039 3.933 34.249 -3.543 -0.902 3.243 6.651 0.067 34.467 20 AA_C58A59:U67G68_AA A 58 ? A 68 ? A 59 ? A 67 ? 1 A A 45 1_555 A U 53 1_555 A C 46 1_555 A G 24 1_555 2.044 -0.563 3.225 5.953 8.819 55.251 -1.102 -1.830 3.294 9.412 -6.353 56.186 21 AA_A59C60:G38U67_AA A 59 ? A 67 ? A 60 ? A 38 ? 1 A C 46 1_555 A G 24 1_555 A C 47 1_555 A G 23 1_555 -0.763 -0.512 3.186 -2.528 7.186 28.641 -2.470 0.976 3.026 14.211 4.999 29.616 22 AA_C60C61:G37G38_AA A 60 ? A 38 ? A 61 ? A 37 ? 1 A C 47 1_555 A G 23 1_555 A A 50 1_555 A A 21 1_555 -3.370 -1.247 4.537 -70.213 162.155 176.643 -0.685 1.659 4.541 81.078 35.107 179.903 23 AA_C61A64:A35G37_AA A 61 ? A 37 ? A 64 ? A 35 ? 1 A A 50 1_555 A A 21 1_555 A G 48 1_555 A U 49 1_555 -2.940 -2.750 3.628 21.984 -172.656 104.720 -0.034 1.641 4.312 -86.941 -11.070 176.367 24 AA_A64G62:U63A35_AA A 64 ? A 35 ? A 62 ? A 63 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETATE ION' ACT 3 'COBALT HEXAMMINE(III)' NCO 4 HYPOXANTHINE HPA 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1U8D _pdbx_initial_refinement_model.details 'PDB ENTRY 1U8D' #