data_2EF7 # _entry.id 2EF7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2EF7 RCSB RCSB026590 WWPDB D_1000026590 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id sto001002348.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2EF7 _pdbx_database_status.recvd_initial_deposition_date 2007-02-21 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Agari, Y.' 1 'Karthe, P.' 2 'Kumarevel, T.' 3 'Yokoyama, S.' 4 'Kuramitsu, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title 'Crystal structure of ST2348, a CBS domain protein, from hyperthermophilic archaeon Sulfolobus tokodaii' _citation.journal_abbrev Biochem.Biophys.Res.Commun. _citation.journal_volume 375 _citation.page_first 124 _citation.page_last 128 _citation.year 2008 _citation.journal_id_ASTM BBRCA9 _citation.country US _citation.journal_id_ISSN 0006-291X _citation.journal_id_CSD 0146 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18691556 _citation.pdbx_database_id_DOI 10.1016/j.bbrc.2008.07.140 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Ragunathan, P.' 1 primary 'Kumarevel, T.' 2 primary 'Agari, Y.' 3 primary 'Shinkai, A.' 4 primary 'Kuramitsu, S.' 5 primary 'Yokoyama, S.' 6 primary 'Ponnuraj, K.' 7 # _cell.entry_id 2EF7 _cell.length_a 51.420 _cell.length_b 135.272 _cell.length_c 41.234 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2EF7 _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Hypothetical protein ST2348' 15146.499 2 ? ? ? ? 2 water nat water 18.015 134 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)EEEIVKEY(MSE)KTQVISVTKDAKLNDIAKV(MSE)TEKNIGSVIVVDGNKPVGIITERDIVKAIGKGKSLETK AEEF(MSE)TASLITIREDSPITGALAL(MSE)RQFNIRHLPVVDDKGNLKGIISIRDITRAIDD(MSE)FET(MSE)GE Y ; _entity_poly.pdbx_seq_one_letter_code_can ;MEEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKGKSLETKAEEFMTASLITI REDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDMFETMGEY ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier sto001002348.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLU n 1 3 GLU n 1 4 GLU n 1 5 ILE n 1 6 VAL n 1 7 LYS n 1 8 GLU n 1 9 TYR n 1 10 MSE n 1 11 LYS n 1 12 THR n 1 13 GLN n 1 14 VAL n 1 15 ILE n 1 16 SER n 1 17 VAL n 1 18 THR n 1 19 LYS n 1 20 ASP n 1 21 ALA n 1 22 LYS n 1 23 LEU n 1 24 ASN n 1 25 ASP n 1 26 ILE n 1 27 ALA n 1 28 LYS n 1 29 VAL n 1 30 MSE n 1 31 THR n 1 32 GLU n 1 33 LYS n 1 34 ASN n 1 35 ILE n 1 36 GLY n 1 37 SER n 1 38 VAL n 1 39 ILE n 1 40 VAL n 1 41 VAL n 1 42 ASP n 1 43 GLY n 1 44 ASN n 1 45 LYS n 1 46 PRO n 1 47 VAL n 1 48 GLY n 1 49 ILE n 1 50 ILE n 1 51 THR n 1 52 GLU n 1 53 ARG n 1 54 ASP n 1 55 ILE n 1 56 VAL n 1 57 LYS n 1 58 ALA n 1 59 ILE n 1 60 GLY n 1 61 LYS n 1 62 GLY n 1 63 LYS n 1 64 SER n 1 65 LEU n 1 66 GLU n 1 67 THR n 1 68 LYS n 1 69 ALA n 1 70 GLU n 1 71 GLU n 1 72 PHE n 1 73 MSE n 1 74 THR n 1 75 ALA n 1 76 SER n 1 77 LEU n 1 78 ILE n 1 79 THR n 1 80 ILE n 1 81 ARG n 1 82 GLU n 1 83 ASP n 1 84 SER n 1 85 PRO n 1 86 ILE n 1 87 THR n 1 88 GLY n 1 89 ALA n 1 90 LEU n 1 91 ALA n 1 92 LEU n 1 93 MSE n 1 94 ARG n 1 95 GLN n 1 96 PHE n 1 97 ASN n 1 98 ILE n 1 99 ARG n 1 100 HIS n 1 101 LEU n 1 102 PRO n 1 103 VAL n 1 104 VAL n 1 105 ASP n 1 106 ASP n 1 107 LYS n 1 108 GLY n 1 109 ASN n 1 110 LEU n 1 111 LYS n 1 112 GLY n 1 113 ILE n 1 114 ILE n 1 115 SER n 1 116 ILE n 1 117 ARG n 1 118 ASP n 1 119 ILE n 1 120 THR n 1 121 ARG n 1 122 ALA n 1 123 ILE n 1 124 ASP n 1 125 ASP n 1 126 MSE n 1 127 PHE n 1 128 GLU n 1 129 THR n 1 130 MSE n 1 131 GLY n 1 132 GLU n 1 133 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'strain 7' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sulfolobus tokodaii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 273063 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21-CodonPlus(DE3)-RIL-X' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-21a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q96Y20_SULTO _struct_ref.pdbx_db_accession Q96Y20 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MEEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKGKSLETKAEEFMTASLITI REDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDMFETMGEY ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2EF7 A 1 ? 133 ? Q96Y20 1 ? 133 ? 1 133 2 1 2EF7 B 1 ? 133 ? Q96Y20 1 ? 133 ? 1 133 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2EF7 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.37 _exptl_crystal.density_percent_sol 48.02 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.3 _exptl_crystal_grow.pdbx_details '160mM ammonium chloride, 16%(w/v) polyethylene glycol 3350, pH 6.3, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU JUPITER 210' _diffrn_detector.pdbx_collection_date 2006-07-17 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si Double Crystal' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97897 1.0 2 0.9 1.0 3 0.97929 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL26B2' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL26B2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97897, 0.9, 0.97929' # _reflns.entry_id 2EF7 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40 _reflns.d_resolution_high 2.1 _reflns.number_obs 17492 _reflns.number_all 17492 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.063 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 32.5 _reflns.B_iso_Wilson_estimate 21.0 _reflns.pdbx_redundancy 6.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.18 _reflns_shell.percent_possible_all 97.3 _reflns_shell.Rmerge_I_obs 0.251 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.89 _reflns_shell.pdbx_redundancy 6.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1682 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2EF7 _refine.ls_number_reflns_obs 17453 _refine.ls_number_reflns_all 17453 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1397823.16 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 39.44 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 99.5 _refine.ls_R_factor_obs 0.216 _refine.ls_R_factor_all 0.22 _refine.ls_R_factor_R_work 0.216 _refine.ls_R_factor_R_free 0.26 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.9 _refine.ls_number_reflns_R_free 1734 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 38.3 _refine.aniso_B[1][1] -0.17 _refine.aniso_B[2][2] -10.60 _refine.aniso_B[3][3] 10.77 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.368075 _refine.solvent_model_param_bsol 50.1767 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2EF7 _refine_analyze.Luzzati_coordinate_error_obs 0.26 _refine_analyze.Luzzati_sigma_a_obs 0.20 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.34 _refine_analyze.Luzzati_sigma_a_free 0.26 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1950 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 134 _refine_hist.number_atoms_total 2084 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 39.44 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.1 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.85 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 3.33 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 4.29 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 6.08 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 8.26 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.10 _refine_ls_shell.d_res_low 2.23 _refine_ls_shell.number_reflns_R_work 2516 _refine_ls_shell.R_factor_R_work 0.245 _refine_ls_shell.percent_reflns_obs 98.3 _refine_ls_shell.R_factor_R_free 0.309 _refine_ls_shell.R_factor_R_free_error 0.018 _refine_ls_shell.percent_reflns_R_free 10.3 _refine_ls_shell.number_reflns_R_free 290 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' # _struct.entry_id 2EF7 _struct.title 'Crystal structure of ST2348, a hypothetical protein with CBS domains from Sulfolobus tokodaii strain7' _struct.pdbx_descriptor 'Hypothetical protein ST2348' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2EF7 _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text ;CBS-domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, OXIDOREDUCTASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ILE A 5 ? TYR A 9 ? ILE A 5 TYR A 9 5 ? 5 HELX_P HELX_P2 2 LYS A 22 ? ASN A 34 ? LYS A 22 ASN A 34 1 ? 13 HELX_P HELX_P3 3 GLU A 52 ? LYS A 61 ? GLU A 52 LYS A 61 1 ? 10 HELX_P HELX_P4 4 LYS A 68 ? PHE A 72 ? LYS A 68 PHE A 72 5 ? 5 HELX_P HELX_P5 5 PRO A 85 ? ASN A 97 ? PRO A 85 ASN A 97 1 ? 13 HELX_P HELX_P6 6 ILE A 116 ? PHE A 127 ? ILE A 116 PHE A 127 1 ? 12 HELX_P HELX_P7 7 ILE B 5 ? TYR B 9 ? ILE B 5 TYR B 9 5 ? 5 HELX_P HELX_P8 8 LYS B 22 ? ASN B 34 ? LYS B 22 ASN B 34 1 ? 13 HELX_P HELX_P9 9 GLU B 52 ? LYS B 61 ? GLU B 52 LYS B 61 1 ? 10 HELX_P HELX_P10 10 LYS B 68 ? PHE B 72 ? LYS B 68 PHE B 72 5 ? 5 HELX_P HELX_P11 11 PRO B 85 ? PHE B 96 ? PRO B 85 PHE B 96 1 ? 12 HELX_P HELX_P12 12 ILE B 116 ? ASP B 125 ? ILE B 116 ASP B 125 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 1 C ? ? ? 1_555 A GLU 2 N ? ? A MSE 1 A GLU 2 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale ? ? A TYR 9 C ? ? ? 1_555 A MSE 10 N ? ? A TYR 9 A MSE 10 1_555 ? ? ? ? ? ? ? 1.327 ? covale3 covale ? ? A MSE 10 C ? ? ? 1_555 A LYS 11 N ? ? A MSE 10 A LYS 11 1_555 ? ? ? ? ? ? ? 1.323 ? covale4 covale ? ? A VAL 29 C ? ? ? 1_555 A MSE 30 N ? ? A VAL 29 A MSE 30 1_555 ? ? ? ? ? ? ? 1.327 ? covale5 covale ? ? A MSE 30 C ? ? ? 1_555 A THR 31 N ? ? A MSE 30 A THR 31 1_555 ? ? ? ? ? ? ? 1.329 ? covale6 covale ? ? A PHE 72 C ? ? ? 1_555 A MSE 73 N ? ? A PHE 72 A MSE 73 1_555 ? ? ? ? ? ? ? 1.327 ? covale7 covale ? ? A MSE 73 C ? ? ? 1_555 A THR 74 N ? ? A MSE 73 A THR 74 1_555 ? ? ? ? ? ? ? 1.327 ? covale8 covale ? ? A LEU 92 C ? ? ? 1_555 A MSE 93 N ? ? A LEU 92 A MSE 93 1_555 ? ? ? ? ? ? ? 1.328 ? covale9 covale ? ? A MSE 93 C ? ? ? 1_555 A ARG 94 N ? ? A MSE 93 A ARG 94 1_555 ? ? ? ? ? ? ? 1.333 ? covale10 covale ? ? A ASP 125 C ? ? ? 1_555 A MSE 126 N ? ? A ASP 125 A MSE 126 1_555 ? ? ? ? ? ? ? 1.327 ? covale11 covale ? ? A MSE 126 C ? ? ? 1_555 A PHE 127 N ? ? A MSE 126 A PHE 127 1_555 ? ? ? ? ? ? ? 1.329 ? covale12 covale ? ? B TYR 9 C ? ? ? 1_555 B MSE 10 N ? ? B TYR 9 B MSE 10 1_555 ? ? ? ? ? ? ? 1.325 ? covale13 covale ? ? B MSE 10 C ? ? ? 1_555 B LYS 11 N ? ? B MSE 10 B LYS 11 1_555 ? ? ? ? ? ? ? 1.326 ? covale14 covale ? ? B VAL 29 C ? ? ? 1_555 B MSE 30 N ? ? B VAL 29 B MSE 30 1_555 ? ? ? ? ? ? ? 1.328 ? covale15 covale ? ? B MSE 30 C ? ? ? 1_555 B THR 31 N ? ? B MSE 30 B THR 31 1_555 ? ? ? ? ? ? ? 1.331 ? covale16 covale ? ? B PHE 72 C ? ? ? 1_555 B MSE 73 N ? ? B PHE 72 B MSE 73 1_555 ? ? ? ? ? ? ? 1.329 ? covale17 covale ? ? B MSE 73 C ? ? ? 1_555 B THR 74 N ? ? B MSE 73 B THR 74 1_555 ? ? ? ? ? ? ? 1.323 ? covale18 covale ? ? B LEU 92 C ? ? ? 1_555 B MSE 93 N ? ? B LEU 92 B MSE 93 1_555 ? ? ? ? ? ? ? 1.330 ? covale19 covale ? ? B MSE 93 C ? ? ? 1_555 B ARG 94 N ? ? B MSE 93 B ARG 94 1_555 ? ? ? ? ? ? ? 1.331 ? covale20 covale ? ? B ASP 125 C ? ? ? 1_555 B MSE 126 N ? ? B ASP 125 B MSE 126 1_555 ? ? ? ? ? ? ? 1.328 ? covale21 covale ? ? B MSE 130 C ? ? ? 1_555 B GLY 131 N ? ? B MSE 130 B GLY 131 1_555 ? ? ? ? ? ? ? 1.331 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? C ? 4 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? parallel D 1 2 ? parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 16 ? THR A 18 ? SER A 16 THR A 18 A 2 SER A 37 ? ASP A 42 ? SER A 37 ASP A 42 A 3 LYS A 45 ? THR A 51 ? LYS A 45 THR A 51 A 4 THR A 74 ? ALA A 75 ? THR A 74 ALA A 75 B 1 ILE A 80 ? ARG A 81 ? ILE A 80 ARG A 81 B 2 HIS A 100 ? VAL A 104 ? HIS A 100 VAL A 104 B 3 LEU A 110 ? SER A 115 ? LEU A 110 SER A 115 C 1 LYS B 11 ? THR B 12 ? LYS B 11 THR B 12 C 2 LEU B 110 ? SER B 115 ? LEU B 110 SER B 115 C 3 HIS B 100 ? VAL B 104 ? HIS B 100 VAL B 104 C 4 ILE B 80 ? ARG B 81 ? ILE B 80 ARG B 81 D 1 SER B 16 ? THR B 18 ? SER B 16 THR B 18 D 2 SER B 37 ? VAL B 41 ? SER B 37 VAL B 41 D 3 PRO B 46 ? THR B 51 ? PRO B 46 THR B 51 D 4 THR B 74 ? ALA B 75 ? THR B 74 ALA B 75 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 17 ? N VAL A 17 O VAL A 41 ? O VAL A 41 A 2 3 N VAL A 40 ? N VAL A 40 O VAL A 47 ? O VAL A 47 A 3 4 N ILE A 49 ? N ILE A 49 O THR A 74 ? O THR A 74 B 1 2 N ILE A 80 ? N ILE A 80 O VAL A 104 ? O VAL A 104 B 2 3 N VAL A 103 ? N VAL A 103 O GLY A 112 ? O GLY A 112 C 1 2 N LYS B 11 ? N LYS B 11 O ILE B 113 ? O ILE B 113 C 2 3 O GLY B 112 ? O GLY B 112 N VAL B 103 ? N VAL B 103 C 3 4 O VAL B 104 ? O VAL B 104 N ILE B 80 ? N ILE B 80 D 1 2 N VAL B 17 ? N VAL B 17 O VAL B 41 ? O VAL B 41 D 2 3 N VAL B 40 ? N VAL B 40 O VAL B 47 ? O VAL B 47 D 3 4 N ILE B 49 ? N ILE B 49 O THR B 74 ? O THR B 74 # _database_PDB_matrix.entry_id 2EF7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2EF7 _atom_sites.fract_transf_matrix[1][1] 0.019448 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007393 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024252 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 1 MSE MSE A . n A 1 2 GLU 2 2 2 GLU GLU A . n A 1 3 GLU 3 3 3 GLU GLU A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 TYR 9 9 9 TYR TYR A . n A 1 10 MSE 10 10 10 MSE MSE A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 GLN 13 13 13 GLN GLN A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 ASN 24 24 24 ASN ASN A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 MSE 30 30 30 MSE MSE A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 ASN 34 34 34 ASN ASN A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 ASP 42 42 42 ASP ASP A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 ASN 44 44 44 ASN ASN A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 PRO 46 46 46 PRO PRO A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 ARG 53 53 53 ARG ARG A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 ILE 55 55 55 ILE ILE A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 GLU 66 66 66 GLU GLU A . n A 1 67 THR 67 67 67 THR THR A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 GLU 70 70 70 GLU GLU A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 PHE 72 72 72 PHE PHE A . n A 1 73 MSE 73 73 73 MSE MSE A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 SER 76 76 76 SER SER A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 THR 79 79 79 THR THR A . n A 1 80 ILE 80 80 80 ILE ILE A . n A 1 81 ARG 81 81 81 ARG ARG A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 ASP 83 83 83 ASP ASP A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 PRO 85 85 85 PRO PRO A . n A 1 86 ILE 86 86 86 ILE ILE A . n A 1 87 THR 87 87 87 THR THR A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 LEU 92 92 92 LEU LEU A . n A 1 93 MSE 93 93 93 MSE MSE A . n A 1 94 ARG 94 94 94 ARG ARG A . n A 1 95 GLN 95 95 95 GLN GLN A . n A 1 96 PHE 96 96 96 PHE PHE A . n A 1 97 ASN 97 97 97 ASN ASN A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 ARG 99 99 99 ARG ARG A . n A 1 100 HIS 100 100 100 HIS HIS A . n A 1 101 LEU 101 101 101 LEU LEU A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 VAL 103 103 103 VAL VAL A . n A 1 104 VAL 104 104 104 VAL VAL A . n A 1 105 ASP 105 105 105 ASP ASP A . n A 1 106 ASP 106 106 106 ASP ASP A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 ASN 109 109 109 ASN ASN A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 LYS 111 111 111 LYS LYS A . n A 1 112 GLY 112 112 112 GLY GLY A . n A 1 113 ILE 113 113 113 ILE ILE A . n A 1 114 ILE 114 114 114 ILE ILE A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 ILE 116 116 116 ILE ILE A . n A 1 117 ARG 117 117 117 ARG ARG A . n A 1 118 ASP 118 118 118 ASP ASP A . n A 1 119 ILE 119 119 119 ILE ILE A . n A 1 120 THR 120 120 120 THR THR A . n A 1 121 ARG 121 121 121 ARG ARG A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 ILE 123 123 123 ILE ILE A . n A 1 124 ASP 124 124 124 ASP ASP A . n A 1 125 ASP 125 125 125 ASP ASP A . n A 1 126 MSE 126 126 126 MSE MSE A . n A 1 127 PHE 127 127 127 PHE PHE A . n A 1 128 GLU 128 128 ? ? ? A . n A 1 129 THR 129 129 ? ? ? A . n A 1 130 MSE 130 130 ? ? ? A . n A 1 131 GLY 131 131 ? ? ? A . n A 1 132 GLU 132 132 ? ? ? A . n A 1 133 TYR 133 133 ? ? ? A . n B 1 1 MSE 1 1 ? ? ? B . n B 1 2 GLU 2 2 ? ? ? B . n B 1 3 GLU 3 3 ? ? ? B . n B 1 4 GLU 4 4 4 GLU GLU B . n B 1 5 ILE 5 5 5 ILE ILE B . n B 1 6 VAL 6 6 6 VAL VAL B . n B 1 7 LYS 7 7 7 LYS LYS B . n B 1 8 GLU 8 8 8 GLU GLU B . n B 1 9 TYR 9 9 9 TYR TYR B . n B 1 10 MSE 10 10 10 MSE MSE B . n B 1 11 LYS 11 11 11 LYS LYS B . n B 1 12 THR 12 12 12 THR THR B . n B 1 13 GLN 13 13 13 GLN GLN B . n B 1 14 VAL 14 14 14 VAL VAL B . n B 1 15 ILE 15 15 15 ILE ILE B . n B 1 16 SER 16 16 16 SER SER B . n B 1 17 VAL 17 17 17 VAL VAL B . n B 1 18 THR 18 18 18 THR THR B . n B 1 19 LYS 19 19 19 LYS LYS B . n B 1 20 ASP 20 20 20 ASP ASP B . n B 1 21 ALA 21 21 21 ALA ALA B . n B 1 22 LYS 22 22 22 LYS LYS B . n B 1 23 LEU 23 23 23 LEU LEU B . n B 1 24 ASN 24 24 24 ASN ASN B . n B 1 25 ASP 25 25 25 ASP ASP B . n B 1 26 ILE 26 26 26 ILE ILE B . n B 1 27 ALA 27 27 27 ALA ALA B . n B 1 28 LYS 28 28 28 LYS LYS B . n B 1 29 VAL 29 29 29 VAL VAL B . n B 1 30 MSE 30 30 30 MSE MSE B . n B 1 31 THR 31 31 31 THR THR B . n B 1 32 GLU 32 32 32 GLU GLU B . n B 1 33 LYS 33 33 33 LYS LYS B . n B 1 34 ASN 34 34 34 ASN ASN B . n B 1 35 ILE 35 35 35 ILE ILE B . n B 1 36 GLY 36 36 36 GLY GLY B . n B 1 37 SER 37 37 37 SER SER B . n B 1 38 VAL 38 38 38 VAL VAL B . n B 1 39 ILE 39 39 39 ILE ILE B . n B 1 40 VAL 40 40 40 VAL VAL B . n B 1 41 VAL 41 41 41 VAL VAL B . n B 1 42 ASP 42 42 42 ASP ASP B . n B 1 43 GLY 43 43 43 GLY GLY B . n B 1 44 ASN 44 44 44 ASN ASN B . n B 1 45 LYS 45 45 45 LYS LYS B . n B 1 46 PRO 46 46 46 PRO PRO B . n B 1 47 VAL 47 47 47 VAL VAL B . n B 1 48 GLY 48 48 48 GLY GLY B . n B 1 49 ILE 49 49 49 ILE ILE B . n B 1 50 ILE 50 50 50 ILE ILE B . n B 1 51 THR 51 51 51 THR THR B . n B 1 52 GLU 52 52 52 GLU GLU B . n B 1 53 ARG 53 53 53 ARG ARG B . n B 1 54 ASP 54 54 54 ASP ASP B . n B 1 55 ILE 55 55 55 ILE ILE B . n B 1 56 VAL 56 56 56 VAL VAL B . n B 1 57 LYS 57 57 57 LYS LYS B . n B 1 58 ALA 58 58 58 ALA ALA B . n B 1 59 ILE 59 59 59 ILE ILE B . n B 1 60 GLY 60 60 60 GLY GLY B . n B 1 61 LYS 61 61 61 LYS LYS B . n B 1 62 GLY 62 62 62 GLY GLY B . n B 1 63 LYS 63 63 63 LYS LYS B . n B 1 64 SER 64 64 64 SER SER B . n B 1 65 LEU 65 65 65 LEU LEU B . n B 1 66 GLU 66 66 66 GLU GLU B . n B 1 67 THR 67 67 67 THR THR B . n B 1 68 LYS 68 68 68 LYS LYS B . n B 1 69 ALA 69 69 69 ALA ALA B . n B 1 70 GLU 70 70 70 GLU GLU B . n B 1 71 GLU 71 71 71 GLU GLU B . n B 1 72 PHE 72 72 72 PHE PHE B . n B 1 73 MSE 73 73 73 MSE MSE B . n B 1 74 THR 74 74 74 THR THR B . n B 1 75 ALA 75 75 75 ALA ALA B . n B 1 76 SER 76 76 76 SER SER B . n B 1 77 LEU 77 77 77 LEU LEU B . n B 1 78 ILE 78 78 78 ILE ILE B . n B 1 79 THR 79 79 79 THR THR B . n B 1 80 ILE 80 80 80 ILE ILE B . n B 1 81 ARG 81 81 81 ARG ARG B . n B 1 82 GLU 82 82 82 GLU GLU B . n B 1 83 ASP 83 83 83 ASP ASP B . n B 1 84 SER 84 84 84 SER SER B . n B 1 85 PRO 85 85 85 PRO PRO B . n B 1 86 ILE 86 86 86 ILE ILE B . n B 1 87 THR 87 87 87 THR THR B . n B 1 88 GLY 88 88 88 GLY GLY B . n B 1 89 ALA 89 89 89 ALA ALA B . n B 1 90 LEU 90 90 90 LEU LEU B . n B 1 91 ALA 91 91 91 ALA ALA B . n B 1 92 LEU 92 92 92 LEU LEU B . n B 1 93 MSE 93 93 93 MSE MSE B . n B 1 94 ARG 94 94 94 ARG ARG B . n B 1 95 GLN 95 95 95 GLN GLN B . n B 1 96 PHE 96 96 96 PHE PHE B . n B 1 97 ASN 97 97 97 ASN ASN B . n B 1 98 ILE 98 98 98 ILE ILE B . n B 1 99 ARG 99 99 99 ARG ARG B . n B 1 100 HIS 100 100 100 HIS HIS B . n B 1 101 LEU 101 101 101 LEU LEU B . n B 1 102 PRO 102 102 102 PRO PRO B . n B 1 103 VAL 103 103 103 VAL VAL B . n B 1 104 VAL 104 104 104 VAL VAL B . n B 1 105 ASP 105 105 105 ASP ASP B . n B 1 106 ASP 106 106 106 ASP ASP B . n B 1 107 LYS 107 107 107 LYS LYS B . n B 1 108 GLY 108 108 108 GLY GLY B . n B 1 109 ASN 109 109 109 ASN ASN B . n B 1 110 LEU 110 110 110 LEU LEU B . n B 1 111 LYS 111 111 111 LYS LYS B . n B 1 112 GLY 112 112 112 GLY GLY B . n B 1 113 ILE 113 113 113 ILE ILE B . n B 1 114 ILE 114 114 114 ILE ILE B . n B 1 115 SER 115 115 115 SER SER B . n B 1 116 ILE 116 116 116 ILE ILE B . n B 1 117 ARG 117 117 117 ARG ARG B . n B 1 118 ASP 118 118 118 ASP ASP B . n B 1 119 ILE 119 119 119 ILE ILE B . n B 1 120 THR 120 120 120 THR THR B . n B 1 121 ARG 121 121 121 ARG ARG B . n B 1 122 ALA 122 122 122 ALA ALA B . n B 1 123 ILE 123 123 123 ILE ILE B . n B 1 124 ASP 124 124 124 ASP ASP B . n B 1 125 ASP 125 125 125 ASP ASP B . n B 1 126 MSE 126 126 126 MSE MSE B . n B 1 127 PHE 127 127 ? ? ? B . n B 1 128 GLU 128 128 ? ? ? B . n B 1 129 THR 129 129 ? ? ? B . n B 1 130 MSE 130 130 130 MSE MSE B . n B 1 131 GLY 131 131 131 GLY GLY B . n B 1 132 GLU 132 132 132 GLU GLU B . n B 1 133 TYR 133 133 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 134 1 HOH HOH A . C 2 HOH 2 135 2 HOH HOH A . C 2 HOH 3 136 3 HOH HOH A . C 2 HOH 4 137 4 HOH HOH A . C 2 HOH 5 138 5 HOH HOH A . C 2 HOH 6 139 6 HOH HOH A . C 2 HOH 7 140 7 HOH HOH A . C 2 HOH 8 141 8 HOH HOH A . C 2 HOH 9 142 9 HOH HOH A . C 2 HOH 10 143 10 HOH HOH A . C 2 HOH 11 144 11 HOH HOH A . C 2 HOH 12 145 12 HOH HOH A . C 2 HOH 13 146 13 HOH HOH A . C 2 HOH 14 147 14 HOH HOH A . C 2 HOH 15 148 15 HOH HOH A . C 2 HOH 16 149 16 HOH HOH A . C 2 HOH 17 150 17 HOH HOH A . C 2 HOH 18 151 18 HOH HOH A . C 2 HOH 19 152 19 HOH HOH A . C 2 HOH 20 153 20 HOH HOH A . C 2 HOH 21 154 21 HOH HOH A . C 2 HOH 22 155 22 HOH HOH A . C 2 HOH 23 156 23 HOH HOH A . C 2 HOH 24 157 24 HOH HOH A . C 2 HOH 25 158 25 HOH HOH A . C 2 HOH 26 159 26 HOH HOH A . C 2 HOH 27 160 27 HOH HOH A . C 2 HOH 28 161 28 HOH HOH A . C 2 HOH 29 162 29 HOH HOH A . C 2 HOH 30 163 30 HOH HOH A . C 2 HOH 31 164 31 HOH HOH A . C 2 HOH 32 165 32 HOH HOH A . C 2 HOH 33 166 33 HOH HOH A . C 2 HOH 34 167 34 HOH HOH A . C 2 HOH 35 168 35 HOH HOH A . C 2 HOH 36 169 36 HOH HOH A . C 2 HOH 37 170 37 HOH HOH A . C 2 HOH 38 171 38 HOH HOH A . C 2 HOH 39 172 39 HOH HOH A . C 2 HOH 40 173 40 HOH HOH A . C 2 HOH 41 174 41 HOH HOH A . C 2 HOH 42 175 42 HOH HOH A . C 2 HOH 43 176 43 HOH HOH A . C 2 HOH 44 177 44 HOH HOH A . C 2 HOH 45 178 45 HOH HOH A . C 2 HOH 46 179 46 HOH HOH A . C 2 HOH 47 180 47 HOH HOH A . C 2 HOH 48 181 48 HOH HOH A . C 2 HOH 49 182 49 HOH HOH A . C 2 HOH 50 183 50 HOH HOH A . C 2 HOH 51 184 51 HOH HOH A . C 2 HOH 52 185 52 HOH HOH A . C 2 HOH 53 186 53 HOH HOH A . C 2 HOH 54 187 54 HOH HOH A . C 2 HOH 55 188 55 HOH HOH A . C 2 HOH 56 189 56 HOH HOH A . C 2 HOH 57 190 57 HOH HOH A . C 2 HOH 58 191 58 HOH HOH A . C 2 HOH 59 192 59 HOH HOH A . C 2 HOH 60 193 60 HOH HOH A . C 2 HOH 61 194 61 HOH HOH A . C 2 HOH 62 195 62 HOH HOH A . C 2 HOH 63 196 63 HOH HOH A . C 2 HOH 64 197 65 HOH HOH A . C 2 HOH 65 198 66 HOH HOH A . C 2 HOH 66 199 67 HOH HOH A . C 2 HOH 67 200 68 HOH HOH A . C 2 HOH 68 201 69 HOH HOH A . C 2 HOH 69 202 70 HOH HOH A . C 2 HOH 70 203 71 HOH HOH A . C 2 HOH 71 204 72 HOH HOH A . C 2 HOH 72 205 73 HOH HOH A . C 2 HOH 73 206 99 HOH HOH A . C 2 HOH 74 207 109 HOH HOH A . C 2 HOH 75 208 125 HOH HOH A . C 2 HOH 76 209 126 HOH HOH A . C 2 HOH 77 210 127 HOH HOH A . C 2 HOH 78 211 128 HOH HOH A . C 2 HOH 79 212 129 HOH HOH A . C 2 HOH 80 213 130 HOH HOH A . C 2 HOH 81 214 131 HOH HOH A . C 2 HOH 82 215 132 HOH HOH A . C 2 HOH 83 216 133 HOH HOH A . C 2 HOH 84 217 134 HOH HOH A . D 2 HOH 1 134 64 HOH HOH B . D 2 HOH 2 135 74 HOH HOH B . D 2 HOH 3 136 75 HOH HOH B . D 2 HOH 4 137 76 HOH HOH B . D 2 HOH 5 138 77 HOH HOH B . D 2 HOH 6 139 78 HOH HOH B . D 2 HOH 7 140 79 HOH HOH B . D 2 HOH 8 141 80 HOH HOH B . D 2 HOH 9 142 81 HOH HOH B . D 2 HOH 10 143 82 HOH HOH B . D 2 HOH 11 144 83 HOH HOH B . D 2 HOH 12 145 84 HOH HOH B . D 2 HOH 13 146 85 HOH HOH B . D 2 HOH 14 147 86 HOH HOH B . D 2 HOH 15 148 87 HOH HOH B . D 2 HOH 16 149 88 HOH HOH B . D 2 HOH 17 150 89 HOH HOH B . D 2 HOH 18 151 90 HOH HOH B . D 2 HOH 19 152 91 HOH HOH B . D 2 HOH 20 153 92 HOH HOH B . D 2 HOH 21 154 93 HOH HOH B . D 2 HOH 22 155 94 HOH HOH B . D 2 HOH 23 156 95 HOH HOH B . D 2 HOH 24 157 96 HOH HOH B . D 2 HOH 25 158 97 HOH HOH B . D 2 HOH 26 159 98 HOH HOH B . D 2 HOH 27 160 100 HOH HOH B . D 2 HOH 28 161 101 HOH HOH B . D 2 HOH 29 162 102 HOH HOH B . D 2 HOH 30 163 103 HOH HOH B . D 2 HOH 31 164 104 HOH HOH B . D 2 HOH 32 165 105 HOH HOH B . D 2 HOH 33 166 106 HOH HOH B . D 2 HOH 34 167 107 HOH HOH B . D 2 HOH 35 168 108 HOH HOH B . D 2 HOH 36 169 110 HOH HOH B . D 2 HOH 37 170 111 HOH HOH B . D 2 HOH 38 171 112 HOH HOH B . D 2 HOH 39 172 113 HOH HOH B . D 2 HOH 40 173 114 HOH HOH B . D 2 HOH 41 174 115 HOH HOH B . D 2 HOH 42 175 116 HOH HOH B . D 2 HOH 43 176 117 HOH HOH B . D 2 HOH 44 177 118 HOH HOH B . D 2 HOH 45 178 119 HOH HOH B . D 2 HOH 46 179 120 HOH HOH B . D 2 HOH 47 180 121 HOH HOH B . D 2 HOH 48 181 122 HOH HOH B . D 2 HOH 49 182 123 HOH HOH B . D 2 HOH 50 183 124 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 1 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 10 A MSE 10 ? MET SELENOMETHIONINE 3 A MSE 30 A MSE 30 ? MET SELENOMETHIONINE 4 A MSE 73 A MSE 73 ? MET SELENOMETHIONINE 5 A MSE 93 A MSE 93 ? MET SELENOMETHIONINE 6 A MSE 126 A MSE 126 ? MET SELENOMETHIONINE 7 B MSE 10 B MSE 10 ? MET SELENOMETHIONINE 8 B MSE 30 B MSE 30 ? MET SELENOMETHIONINE 9 B MSE 73 B MSE 73 ? MET SELENOMETHIONINE 10 B MSE 93 B MSE 93 ? MET SELENOMETHIONINE 11 B MSE 126 B MSE 126 ? MET SELENOMETHIONINE 12 B MSE 130 B MSE 130 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6500 ? 1 MORE -41 ? 1 'SSA (A^2)' 24360 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-08-21 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Derived calculations' 2 2 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 BSS 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 SOLVE phasing . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 44 ? ? 75.55 -8.44 2 1 GLN B 13 ? ? -171.02 117.54 3 1 ASP B 42 ? ? -97.09 47.12 4 1 SER B 76 ? ? -171.66 134.45 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 128 ? A GLU 128 2 1 Y 1 A THR 129 ? A THR 129 3 1 Y 1 A MSE 130 ? A MSE 130 4 1 Y 1 A GLY 131 ? A GLY 131 5 1 Y 1 A GLU 132 ? A GLU 132 6 1 Y 1 A TYR 133 ? A TYR 133 7 1 Y 1 B MSE 1 ? B MSE 1 8 1 Y 1 B GLU 2 ? B GLU 2 9 1 Y 1 B GLU 3 ? B GLU 3 10 1 Y 1 B PHE 127 ? B PHE 127 11 1 Y 1 B GLU 128 ? B GLU 128 12 1 Y 1 B THR 129 ? B THR 129 13 1 Y 1 B TYR 133 ? B TYR 133 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #