data_2EI9 # _entry.id 2EI9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2EI9 pdb_00002ei9 10.2210/pdb2ei9/pdb RCSB RCSB026698 ? ? WWPDB D_1000026698 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2EI9 _pdbx_database_status.recvd_initial_deposition_date 2007-03-12 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Maita, N.' 1 'Aoyagi, H.' 2 'Osanai, M.' 3 'Shirakawa, M.' 4 'Fujiwara, H.' 5 # _citation.id primary _citation.title 'Characterization of the sequence specificity of the R1Bm endonuclease domain by structural and biochemical studies.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 35 _citation.page_first 3918 _citation.page_last 3927 _citation.year 2007 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17537809 _citation.pdbx_database_id_DOI 10.1093/nar/gkm397 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Maita, N.' 1 ? primary 'Aoyagi, H.' 2 ? primary 'Osanai, M.' 3 ? primary 'Shirakawa, M.' 4 ? primary 'Fujiwara, H.' 5 ? # _cell.entry_id 2EI9 _cell.length_a 141.303 _cell.length_b 141.303 _cell.length_c 37.508 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2EI9 _symmetry.space_group_name_H-M 'P 3 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Non-LTR retrotransposon R1Bmks ORF2 protein' 26717.090 1 ? ? 'endonuclease domain' ? 2 non-polymer syn 'ACETIC ACID' 60.052 1 ? ? ? ? 3 water nat water 18.015 125 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'R1 retorotransposon, R1Bm' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;HMDIRPRLRIGQINLGGAEDATRELPSIARDLGLDIVLVQEQYSMVGFLAQCGAHPKAGVYIRNRVLPCAVLHHLSSTHI TVVHIGGWDLYMVSAYFQYSDPIDPYLHRLGNILDRLRGARVVICADTNAHSPLWHSLPRHYVGRGQEVADRRAKMEDFI GARRLVVHNADGHLPTFSTANGESYVDVTLSTRGVRVSEWRVTNESSSDHRLIVFGVGGGTTGERDEDEEARSDLRPGEP ; _entity_poly.pdbx_seq_one_letter_code_can ;HMDIRPRLRIGQINLGGAEDATRELPSIARDLGLDIVLVQEQYSMVGFLAQCGAHPKAGVYIRNRVLPCAVLHHLSSTHI TVVHIGGWDLYMVSAYFQYSDPIDPYLHRLGNILDRLRGARVVICADTNAHSPLWHSLPRHYVGRGQEVADRRAKMEDFI GARRLVVHNADGHLPTFSTANGESYVDVTLSTRGVRVSEWRVTNESSSDHRLIVFGVGGGTTGERDEDEEARSDLRPGEP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 MET n 1 3 ASP n 1 4 ILE n 1 5 ARG n 1 6 PRO n 1 7 ARG n 1 8 LEU n 1 9 ARG n 1 10 ILE n 1 11 GLY n 1 12 GLN n 1 13 ILE n 1 14 ASN n 1 15 LEU n 1 16 GLY n 1 17 GLY n 1 18 ALA n 1 19 GLU n 1 20 ASP n 1 21 ALA n 1 22 THR n 1 23 ARG n 1 24 GLU n 1 25 LEU n 1 26 PRO n 1 27 SER n 1 28 ILE n 1 29 ALA n 1 30 ARG n 1 31 ASP n 1 32 LEU n 1 33 GLY n 1 34 LEU n 1 35 ASP n 1 36 ILE n 1 37 VAL n 1 38 LEU n 1 39 VAL n 1 40 GLN n 1 41 GLU n 1 42 GLN n 1 43 TYR n 1 44 SER n 1 45 MET n 1 46 VAL n 1 47 GLY n 1 48 PHE n 1 49 LEU n 1 50 ALA n 1 51 GLN n 1 52 CYS n 1 53 GLY n 1 54 ALA n 1 55 HIS n 1 56 PRO n 1 57 LYS n 1 58 ALA n 1 59 GLY n 1 60 VAL n 1 61 TYR n 1 62 ILE n 1 63 ARG n 1 64 ASN n 1 65 ARG n 1 66 VAL n 1 67 LEU n 1 68 PRO n 1 69 CYS n 1 70 ALA n 1 71 VAL n 1 72 LEU n 1 73 HIS n 1 74 HIS n 1 75 LEU n 1 76 SER n 1 77 SER n 1 78 THR n 1 79 HIS n 1 80 ILE n 1 81 THR n 1 82 VAL n 1 83 VAL n 1 84 HIS n 1 85 ILE n 1 86 GLY n 1 87 GLY n 1 88 TRP n 1 89 ASP n 1 90 LEU n 1 91 TYR n 1 92 MET n 1 93 VAL n 1 94 SER n 1 95 ALA n 1 96 TYR n 1 97 PHE n 1 98 GLN n 1 99 TYR n 1 100 SER n 1 101 ASP n 1 102 PRO n 1 103 ILE n 1 104 ASP n 1 105 PRO n 1 106 TYR n 1 107 LEU n 1 108 HIS n 1 109 ARG n 1 110 LEU n 1 111 GLY n 1 112 ASN n 1 113 ILE n 1 114 LEU n 1 115 ASP n 1 116 ARG n 1 117 LEU n 1 118 ARG n 1 119 GLY n 1 120 ALA n 1 121 ARG n 1 122 VAL n 1 123 VAL n 1 124 ILE n 1 125 CYS n 1 126 ALA n 1 127 ASP n 1 128 THR n 1 129 ASN n 1 130 ALA n 1 131 HIS n 1 132 SER n 1 133 PRO n 1 134 LEU n 1 135 TRP n 1 136 HIS n 1 137 SER n 1 138 LEU n 1 139 PRO n 1 140 ARG n 1 141 HIS n 1 142 TYR n 1 143 VAL n 1 144 GLY n 1 145 ARG n 1 146 GLY n 1 147 GLN n 1 148 GLU n 1 149 VAL n 1 150 ALA n 1 151 ASP n 1 152 ARG n 1 153 ARG n 1 154 ALA n 1 155 LYS n 1 156 MET n 1 157 GLU n 1 158 ASP n 1 159 PHE n 1 160 ILE n 1 161 GLY n 1 162 ALA n 1 163 ARG n 1 164 ARG n 1 165 LEU n 1 166 VAL n 1 167 VAL n 1 168 HIS n 1 169 ASN n 1 170 ALA n 1 171 ASP n 1 172 GLY n 1 173 HIS n 1 174 LEU n 1 175 PRO n 1 176 THR n 1 177 PHE n 1 178 SER n 1 179 THR n 1 180 ALA n 1 181 ASN n 1 182 GLY n 1 183 GLU n 1 184 SER n 1 185 TYR n 1 186 VAL n 1 187 ASP n 1 188 VAL n 1 189 THR n 1 190 LEU n 1 191 SER n 1 192 THR n 1 193 ARG n 1 194 GLY n 1 195 VAL n 1 196 ARG n 1 197 VAL n 1 198 SER n 1 199 GLU n 1 200 TRP n 1 201 ARG n 1 202 VAL n 1 203 THR n 1 204 ASN n 1 205 GLU n 1 206 SER n 1 207 SER n 1 208 SER n 1 209 ASP n 1 210 HIS n 1 211 ARG n 1 212 LEU n 1 213 ILE n 1 214 VAL n 1 215 PHE n 1 216 GLY n 1 217 VAL n 1 218 GLY n 1 219 GLY n 1 220 GLY n 1 221 THR n 1 222 THR n 1 223 GLY n 1 224 GLU n 1 225 ARG n 1 226 ASP n 1 227 GLU n 1 228 ASP n 1 229 GLU n 1 230 GLU n 1 231 ALA n 1 232 ARG n 1 233 SER n 1 234 ASP n 1 235 LEU n 1 236 ARG n 1 237 PRO n 1 238 GLY n 1 239 GLU n 1 240 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'domestic silkworm' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bombyx mori' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7091 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET16b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5NTZ0_BOMMO _struct_ref.pdbx_db_accession Q5NTZ0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MDIRPRLRIGQINLGGAEDATRELPSIARDLGLDIVLVQEQYSMVGFLAQCGAHPKAGVYIRNRVLPCAVLHHLSSTHIT VVHIGGWDLYMVSAYFQYSDPIDPYLHRLGNILDRLRGARVVICADTNAHSPLWHSLPRHYVGRGQEVADRRAKMEDFIG ARRLVVHNADGHLPTFSTANGESYVDVTLSTRGVRVSEWRVTNESSSDHRLIVFGVGGGTTGERDEDEEARSDLRPGEP ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2EI9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 240 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5NTZ0 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 239 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 5 _struct_ref_seq.pdbx_auth_seq_align_end 243 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2EI9 _struct_ref_seq_dif.mon_id HIS _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q5NTZ0 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 4 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACY non-polymer . 'ACETIC ACID' ? 'C2 H4 O2' 60.052 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2EI9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.07 _exptl_crystal.density_percent_sol 69.74 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 283 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.9 _exptl_crystal_grow.pdbx_details '2.4M sodium acetate, 10mM ammonium sulfate, 2% Jeffamine M600, pH 6.9, VAPOR DIFFUSION, HANGING DROP, temperature 283K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2004-10-02 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-6A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL-6A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.000 # _reflns.entry_id 2EI9 _reflns.observed_criterion_sigma_F 2 _reflns.observed_criterion_sigma_I 2 _reflns.d_resolution_high 2.0 _reflns.d_resolution_low 40 _reflns.number_all 29191 _reflns.number_obs 29191 _reflns.percent_possible_obs 99.99 _reflns.pdbx_Rmerge_I_obs 0.09 _reflns.pdbx_Rsym_value 0.088 _reflns.pdbx_netI_over_sigmaI 6.8 _reflns.B_iso_Wilson_estimate 22.58 _reflns.pdbx_redundancy 21.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2 _reflns_shell.d_res_low 2.11 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.366 _reflns_shell.pdbx_Rsym_value 0.356 _reflns_shell.meanI_over_sigI_obs 2.1 _reflns_shell.pdbx_redundancy 19.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 4210 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2EI9 _refine.ls_d_res_high 2 _refine.ls_d_res_low 40 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 29194 _refine.ls_number_reflns_obs 29191 _refine.ls_number_reflns_R_free 1432 _refine.ls_percent_reflns_obs 99.99 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.1953 _refine.ls_R_factor_R_free 0.2108 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB ENTRY 1WDU' _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model Isotropic _refine.B_iso_mean 24.35 _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2EI9 _refine_analyze.Luzzati_coordinate_error_obs 0.22 _refine_analyze.Luzzati_sigma_a_obs 0.11 _refine_analyze.Luzzati_d_res_low_obs 5 _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1659 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 129 _refine_hist.number_atoms_total 1788 _refine_hist.d_res_high 2 _refine_hist.d_res_low 40 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005229 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.30435 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 24.85418 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.72326 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2 _refine_ls_shell.d_res_low 2.07 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.2078 _refine_ls_shell.percent_reflns_obs 100 _refine_ls_shell.R_factor_R_free 0.2476 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 161 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 2874 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2EI9 _struct.title 'Crystal structure of R1Bm endonuclease domain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2EI9 _struct_keywords.pdbx_keywords 'GENE REGULATION' _struct_keywords.text 'four layered alpha beta sandwich, GENE REGULATION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 18 ? GLU A 24 ? ALA A 21 GLU A 27 1 ? 7 HELX_P HELX_P2 2 GLU A 24 ? GLY A 33 ? GLU A 27 GLY A 36 1 ? 10 HELX_P HELX_P3 3 HIS A 73 ? SER A 76 ? HIS A 76 SER A 79 5 ? 4 HELX_P HELX_P4 4 ILE A 103 ? LEU A 117 ? ILE A 106 LEU A 120 1 ? 15 HELX_P HELX_P5 5 SER A 132 ? HIS A 136 ? SER A 135 HIS A 139 5 ? 5 HELX_P HELX_P6 6 LEU A 138 ? VAL A 143 ? LEU A 141 VAL A 146 1 ? 6 HELX_P HELX_P7 7 GLY A 146 ? ARG A 163 ? GLY A 149 ARG A 166 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 6 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 49 ? ALA A 50 ? LEU A 52 ALA A 53 A 2 ALA A 58 ? ILE A 62 ? ALA A 61 ILE A 65 A 3 ILE A 36 ? GLN A 40 ? ILE A 39 GLN A 43 A 4 ARG A 7 ? ASN A 14 ? ARG A 10 ASN A 17 A 5 ILE A 213 ? GLY A 218 ? ILE A 216 GLY A 221 A 6 VAL A 197 ? VAL A 202 ? VAL A 200 VAL A 205 B 1 CYS A 69 ? VAL A 71 ? CYS A 72 VAL A 74 B 2 ILE A 80 ? ILE A 85 ? ILE A 83 ILE A 88 B 3 LEU A 90 ? TYR A 96 ? LEU A 93 TYR A 99 B 4 VAL A 122 ? ASP A 127 ? VAL A 125 ASP A 130 B 5 ASP A 187 ? SER A 191 ? ASP A 190 SER A 194 B 6 VAL A 166 ? VAL A 167 ? VAL A 169 VAL A 170 C 1 PHE A 177 ? THR A 179 ? PHE A 180 THR A 182 C 2 GLY A 182 ? SER A 184 ? GLY A 185 SER A 187 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA A 50 ? N ALA A 53 O VAL A 60 ? O VAL A 63 A 2 3 O TYR A 61 ? O TYR A 64 N VAL A 37 ? N VAL A 40 A 3 4 O LEU A 38 ? O LEU A 41 N GLY A 11 ? N GLY A 14 A 4 5 N ILE A 10 ? N ILE A 13 O PHE A 215 ? O PHE A 218 A 5 6 O GLY A 216 ? O GLY A 219 N SER A 198 ? N SER A 201 B 1 2 N ALA A 70 ? N ALA A 73 O HIS A 84 ? O HIS A 87 B 2 3 N ILE A 85 ? N ILE A 88 O LEU A 90 ? O LEU A 93 B 3 4 N VAL A 93 ? N VAL A 96 O CYS A 125 ? O CYS A 128 B 4 5 N ILE A 124 ? N ILE A 127 O LEU A 190 ? O LEU A 193 B 5 6 O SER A 191 ? O SER A 194 N VAL A 166 ? N VAL A 169 C 1 2 N PHE A 177 ? N PHE A 180 O SER A 184 ? O SER A 187 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id ACY _struct_site.pdbx_auth_seq_id 501 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 9 _struct_site.details 'BINDING SITE FOR RESIDUE ACY A 501' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 PRO A 26 ? PRO A 29 . ? 6_556 ? 2 AC1 9 ARG A 30 ? ARG A 33 . ? 1_555 ? 3 AC1 9 PHE A 48 ? PHE A 51 . ? 6_556 ? 4 AC1 9 TYR A 61 ? TYR A 64 . ? 6_556 ? 5 AC1 9 ARG A 63 ? ARG A 66 . ? 1_555 ? 6 AC1 9 ARG A 63 ? ARG A 66 . ? 6_556 ? 7 AC1 9 HOH C . ? HOH A 615 . ? 1_555 ? 8 AC1 9 HOH C . ? HOH A 624 . ? 6_556 ? 9 AC1 9 HOH C . ? HOH A 624 . ? 1_555 ? # _database_PDB_matrix.entry_id 2EI9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2EI9 _atom_sites.fract_transf_matrix[1][1] 0.007077 _atom_sites.fract_transf_matrix[1][2] 0.004086 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008172 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026661 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HIS 1 4 ? ? ? A . n A 1 2 MET 2 5 ? ? ? A . n A 1 3 ASP 3 6 ? ? ? A . n A 1 4 ILE 4 7 ? ? ? A . n A 1 5 ARG 5 8 ? ? ? A . n A 1 6 PRO 6 9 9 PRO ALA A . n A 1 7 ARG 7 10 10 ARG ARG A . n A 1 8 LEU 8 11 11 LEU LEU A . n A 1 9 ARG 9 12 12 ARG ARG A . n A 1 10 ILE 10 13 13 ILE ILE A . n A 1 11 GLY 11 14 14 GLY GLY A . n A 1 12 GLN 12 15 15 GLN GLN A . n A 1 13 ILE 13 16 16 ILE ILE A . n A 1 14 ASN 14 17 17 ASN ASN A . n A 1 15 LEU 15 18 18 LEU LEU A . n A 1 16 GLY 16 19 19 GLY GLY A . n A 1 17 GLY 17 20 20 GLY GLY A . n A 1 18 ALA 18 21 21 ALA ALA A . n A 1 19 GLU 19 22 22 GLU GLU A . n A 1 20 ASP 20 23 23 ASP ASP A . n A 1 21 ALA 21 24 24 ALA ALA A . n A 1 22 THR 22 25 25 THR THR A . n A 1 23 ARG 23 26 26 ARG ARG A . n A 1 24 GLU 24 27 27 GLU GLU A . n A 1 25 LEU 25 28 28 LEU LEU A . n A 1 26 PRO 26 29 29 PRO PRO A . n A 1 27 SER 27 30 30 SER SER A . n A 1 28 ILE 28 31 31 ILE ILE A . n A 1 29 ALA 29 32 32 ALA ALA A . n A 1 30 ARG 30 33 33 ARG ARG A . n A 1 31 ASP 31 34 34 ASP ASP A . n A 1 32 LEU 32 35 35 LEU LEU A . n A 1 33 GLY 33 36 36 GLY GLY A . n A 1 34 LEU 34 37 37 LEU LEU A . n A 1 35 ASP 35 38 38 ASP ASP A . n A 1 36 ILE 36 39 39 ILE ILE A . n A 1 37 VAL 37 40 40 VAL VAL A . n A 1 38 LEU 38 41 41 LEU LEU A . n A 1 39 VAL 39 42 42 VAL VAL A . n A 1 40 GLN 40 43 43 GLN GLN A . n A 1 41 GLU 41 44 44 GLU GLU A . n A 1 42 GLN 42 45 45 GLN GLN A . n A 1 43 TYR 43 46 46 TYR TYR A . n A 1 44 SER 44 47 47 SER SER A . n A 1 45 MET 45 48 48 MET MET A . n A 1 46 VAL 46 49 49 VAL VAL A . n A 1 47 GLY 47 50 50 GLY GLY A . n A 1 48 PHE 48 51 51 PHE PHE A . n A 1 49 LEU 49 52 52 LEU LEU A . n A 1 50 ALA 50 53 53 ALA ALA A . n A 1 51 GLN 51 54 54 GLN GLN A . n A 1 52 CYS 52 55 55 CYS CYS A . n A 1 53 GLY 53 56 56 GLY GLY A . n A 1 54 ALA 54 57 57 ALA ALA A . n A 1 55 HIS 55 58 58 HIS HIS A . n A 1 56 PRO 56 59 59 PRO PRO A . n A 1 57 LYS 57 60 60 LYS LYS A . n A 1 58 ALA 58 61 61 ALA ALA A . n A 1 59 GLY 59 62 62 GLY GLY A . n A 1 60 VAL 60 63 63 VAL VAL A . n A 1 61 TYR 61 64 64 TYR TYR A . n A 1 62 ILE 62 65 65 ILE ILE A . n A 1 63 ARG 63 66 66 ARG ARG A . n A 1 64 ASN 64 67 67 ASN ASN A . n A 1 65 ARG 65 68 68 ARG ARG A . n A 1 66 VAL 66 69 69 VAL VAL A . n A 1 67 LEU 67 70 70 LEU LEU A . n A 1 68 PRO 68 71 71 PRO PRO A . n A 1 69 CYS 69 72 72 CYS CYS A . n A 1 70 ALA 70 73 73 ALA ALA A . n A 1 71 VAL 71 74 74 VAL VAL A . n A 1 72 LEU 72 75 75 LEU LEU A . n A 1 73 HIS 73 76 76 HIS HIS A . n A 1 74 HIS 74 77 77 HIS HIS A . n A 1 75 LEU 75 78 78 LEU LEU A . n A 1 76 SER 76 79 79 SER SER A . n A 1 77 SER 77 80 80 SER SER A . n A 1 78 THR 78 81 81 THR THR A . n A 1 79 HIS 79 82 82 HIS HIS A . n A 1 80 ILE 80 83 83 ILE ILE A . n A 1 81 THR 81 84 84 THR THR A . n A 1 82 VAL 82 85 85 VAL VAL A . n A 1 83 VAL 83 86 86 VAL VAL A . n A 1 84 HIS 84 87 87 HIS HIS A . n A 1 85 ILE 85 88 88 ILE ILE A . n A 1 86 GLY 86 89 89 GLY GLY A . n A 1 87 GLY 87 90 90 GLY GLY A . n A 1 88 TRP 88 91 91 TRP TRP A . n A 1 89 ASP 89 92 92 ASP ASP A . n A 1 90 LEU 90 93 93 LEU LEU A . n A 1 91 TYR 91 94 94 TYR TYR A . n A 1 92 MET 92 95 95 MET MET A . n A 1 93 VAL 93 96 96 VAL VAL A . n A 1 94 SER 94 97 97 SER SER A . n A 1 95 ALA 95 98 98 ALA ALA A . n A 1 96 TYR 96 99 99 TYR TYR A . n A 1 97 PHE 97 100 100 PHE PHE A . n A 1 98 GLN 98 101 101 GLN GLN A . n A 1 99 TYR 99 102 102 TYR TYR A . n A 1 100 SER 100 103 103 SER SER A . n A 1 101 ASP 101 104 104 ASP ASP A . n A 1 102 PRO 102 105 105 PRO PRO A . n A 1 103 ILE 103 106 106 ILE ILE A . n A 1 104 ASP 104 107 107 ASP ASP A . n A 1 105 PRO 105 108 108 PRO PRO A . n A 1 106 TYR 106 109 109 TYR TYR A . n A 1 107 LEU 107 110 110 LEU LEU A . n A 1 108 HIS 108 111 111 HIS HIS A . n A 1 109 ARG 109 112 112 ARG ARG A . n A 1 110 LEU 110 113 113 LEU LEU A . n A 1 111 GLY 111 114 114 GLY GLY A . n A 1 112 ASN 112 115 115 ASN ASN A . n A 1 113 ILE 113 116 116 ILE ILE A . n A 1 114 LEU 114 117 117 LEU LEU A . n A 1 115 ASP 115 118 118 ASP ASP A . n A 1 116 ARG 116 119 119 ARG ARG A . n A 1 117 LEU 117 120 120 LEU LEU A . n A 1 118 ARG 118 121 121 ARG ARG A . n A 1 119 GLY 119 122 122 GLY GLY A . n A 1 120 ALA 120 123 123 ALA ALA A . n A 1 121 ARG 121 124 124 ARG ARG A . n A 1 122 VAL 122 125 125 VAL VAL A . n A 1 123 VAL 123 126 126 VAL VAL A . n A 1 124 ILE 124 127 127 ILE ILE A . n A 1 125 CYS 125 128 128 CYS CYS A . n A 1 126 ALA 126 129 129 ALA ALA A . n A 1 127 ASP 127 130 130 ASP ASP A . n A 1 128 THR 128 131 131 THR THR A . n A 1 129 ASN 129 132 132 ASN ASN A . n A 1 130 ALA 130 133 133 ALA ALA A . n A 1 131 HIS 131 134 134 HIS HIS A . n A 1 132 SER 132 135 135 SER SER A . n A 1 133 PRO 133 136 136 PRO PRO A . n A 1 134 LEU 134 137 137 LEU LEU A . n A 1 135 TRP 135 138 138 TRP TRP A . n A 1 136 HIS 136 139 139 HIS HIS A . n A 1 137 SER 137 140 140 SER SER A . n A 1 138 LEU 138 141 141 LEU LEU A . n A 1 139 PRO 139 142 142 PRO PRO A . n A 1 140 ARG 140 143 143 ARG ARG A . n A 1 141 HIS 141 144 144 HIS HIS A . n A 1 142 TYR 142 145 145 TYR TYR A . n A 1 143 VAL 143 146 146 VAL VAL A . n A 1 144 GLY 144 147 147 GLY GLY A . n A 1 145 ARG 145 148 148 ARG ARG A . n A 1 146 GLY 146 149 149 GLY GLY A . n A 1 147 GLN 147 150 150 GLN GLN A . n A 1 148 GLU 148 151 151 GLU GLU A . n A 1 149 VAL 149 152 152 VAL VAL A . n A 1 150 ALA 150 153 153 ALA ALA A . n A 1 151 ASP 151 154 154 ASP ASP A . n A 1 152 ARG 152 155 155 ARG ARG A . n A 1 153 ARG 153 156 156 ARG ARG A . n A 1 154 ALA 154 157 157 ALA ALA A . n A 1 155 LYS 155 158 158 LYS LYS A . n A 1 156 MET 156 159 159 MET MET A . n A 1 157 GLU 157 160 160 GLU GLU A . n A 1 158 ASP 158 161 161 ASP ASP A . n A 1 159 PHE 159 162 162 PHE PHE A . n A 1 160 ILE 160 163 163 ILE ILE A . n A 1 161 GLY 161 164 164 GLY GLY A . n A 1 162 ALA 162 165 165 ALA ALA A . n A 1 163 ARG 163 166 166 ARG ARG A . n A 1 164 ARG 164 167 167 ARG ARG A . n A 1 165 LEU 165 168 168 LEU LEU A . n A 1 166 VAL 166 169 169 VAL VAL A . n A 1 167 VAL 167 170 170 VAL VAL A . n A 1 168 HIS 168 171 171 HIS HIS A . n A 1 169 ASN 169 172 172 ASN ASN A . n A 1 170 ALA 170 173 173 ALA ALA A . n A 1 171 ASP 171 174 174 ASP ASP A . n A 1 172 GLY 172 175 175 GLY GLY A . n A 1 173 HIS 173 176 176 HIS HIS A . n A 1 174 LEU 174 177 177 LEU LEU A . n A 1 175 PRO 175 178 178 PRO PRO A . n A 1 176 THR 176 179 179 THR THR A . n A 1 177 PHE 177 180 180 PHE PHE A . n A 1 178 SER 178 181 181 SER SER A . n A 1 179 THR 179 182 182 THR THR A . n A 1 180 ALA 180 183 183 ALA ALA A . n A 1 181 ASN 181 184 184 ASN ASN A . n A 1 182 GLY 182 185 185 GLY GLY A . n A 1 183 GLU 183 186 186 GLU GLU A . n A 1 184 SER 184 187 187 SER SER A . n A 1 185 TYR 185 188 188 TYR TYR A . n A 1 186 VAL 186 189 189 VAL VAL A . n A 1 187 ASP 187 190 190 ASP ASP A . n A 1 188 VAL 188 191 191 VAL VAL A . n A 1 189 THR 189 192 192 THR THR A . n A 1 190 LEU 190 193 193 LEU LEU A . n A 1 191 SER 191 194 194 SER SER A . n A 1 192 THR 192 195 195 THR THR A . n A 1 193 ARG 193 196 196 ARG ALA A . n A 1 194 GLY 194 197 197 GLY GLY A . n A 1 195 VAL 195 198 198 VAL VAL A . n A 1 196 ARG 196 199 199 ARG ALA A . n A 1 197 VAL 197 200 200 VAL VAL A . n A 1 198 SER 198 201 201 SER SER A . n A 1 199 GLU 199 202 202 GLU GLU A . n A 1 200 TRP 200 203 203 TRP TRP A . n A 1 201 ARG 201 204 204 ARG ARG A . n A 1 202 VAL 202 205 205 VAL VAL A . n A 1 203 THR 203 206 206 THR THR A . n A 1 204 ASN 204 207 207 ASN ASN A . n A 1 205 GLU 205 208 208 GLU GLU A . n A 1 206 SER 206 209 209 SER SER A . n A 1 207 SER 207 210 210 SER SER A . n A 1 208 SER 208 211 211 SER SER A . n A 1 209 ASP 209 212 212 ASP ASP A . n A 1 210 HIS 210 213 213 HIS HIS A . n A 1 211 ARG 211 214 214 ARG ARG A . n A 1 212 LEU 212 215 215 LEU LEU A . n A 1 213 ILE 213 216 216 ILE ILE A . n A 1 214 VAL 214 217 217 VAL VAL A . n A 1 215 PHE 215 218 218 PHE PHE A . n A 1 216 GLY 216 219 219 GLY GLY A . n A 1 217 VAL 217 220 220 VAL VAL A . n A 1 218 GLY 218 221 221 GLY GLY A . n A 1 219 GLY 219 222 222 GLY GLY A . n A 1 220 GLY 220 223 ? ? ? A . n A 1 221 THR 221 224 ? ? ? A . n A 1 222 THR 222 225 ? ? ? A . n A 1 223 GLY 223 226 ? ? ? A . n A 1 224 GLU 224 227 ? ? ? A . n A 1 225 ARG 225 228 ? ? ? A . n A 1 226 ASP 226 229 ? ? ? A . n A 1 227 GLU 227 230 ? ? ? A . n A 1 228 ASP 228 231 ? ? ? A . n A 1 229 GLU 229 232 ? ? ? A . n A 1 230 GLU 230 233 ? ? ? A . n A 1 231 ALA 231 234 ? ? ? A . n A 1 232 ARG 232 235 ? ? ? A . n A 1 233 SER 233 236 ? ? ? A . n A 1 234 ASP 234 237 ? ? ? A . n A 1 235 LEU 235 238 ? ? ? A . n A 1 236 ARG 236 239 ? ? ? A . n A 1 237 PRO 237 240 ? ? ? A . n A 1 238 GLY 238 241 ? ? ? A . n A 1 239 GLU 239 242 ? ? ? A . n A 1 240 PRO 240 243 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACY 1 501 501 ACY ACY A . C 3 HOH 1 502 1 HOH WAT A . C 3 HOH 2 503 2 HOH WAT A . C 3 HOH 3 504 3 HOH WAT A . C 3 HOH 4 505 4 HOH WAT A . C 3 HOH 5 506 5 HOH WAT A . C 3 HOH 6 507 6 HOH WAT A . C 3 HOH 7 508 7 HOH WAT A . C 3 HOH 8 509 8 HOH WAT A . C 3 HOH 9 510 9 HOH WAT A . C 3 HOH 10 511 10 HOH WAT A . C 3 HOH 11 512 11 HOH WAT A . C 3 HOH 12 513 12 HOH WAT A . C 3 HOH 13 514 13 HOH WAT A . C 3 HOH 14 515 14 HOH WAT A . C 3 HOH 15 516 15 HOH WAT A . C 3 HOH 16 517 16 HOH WAT A . C 3 HOH 17 518 17 HOH WAT A . C 3 HOH 18 519 18 HOH WAT A . C 3 HOH 19 520 19 HOH WAT A . C 3 HOH 20 521 20 HOH WAT A . C 3 HOH 21 522 21 HOH WAT A . C 3 HOH 22 523 22 HOH WAT A . C 3 HOH 23 524 23 HOH WAT A . C 3 HOH 24 525 24 HOH WAT A . C 3 HOH 25 526 25 HOH WAT A . C 3 HOH 26 527 26 HOH WAT A . C 3 HOH 27 528 27 HOH WAT A . C 3 HOH 28 529 28 HOH WAT A . C 3 HOH 29 530 29 HOH WAT A . C 3 HOH 30 531 30 HOH WAT A . C 3 HOH 31 532 31 HOH WAT A . C 3 HOH 32 533 32 HOH WAT A . C 3 HOH 33 534 33 HOH WAT A . C 3 HOH 34 535 34 HOH WAT A . C 3 HOH 35 536 35 HOH WAT A . C 3 HOH 36 537 36 HOH WAT A . C 3 HOH 37 538 37 HOH WAT A . C 3 HOH 38 539 38 HOH WAT A . C 3 HOH 39 540 39 HOH WAT A . C 3 HOH 40 541 40 HOH WAT A . C 3 HOH 41 542 41 HOH WAT A . C 3 HOH 42 543 42 HOH WAT A . C 3 HOH 43 544 43 HOH WAT A . C 3 HOH 44 545 44 HOH WAT A . C 3 HOH 45 546 45 HOH WAT A . C 3 HOH 46 547 46 HOH WAT A . C 3 HOH 47 548 47 HOH WAT A . C 3 HOH 48 549 48 HOH WAT A . C 3 HOH 49 550 49 HOH WAT A . C 3 HOH 50 551 50 HOH WAT A . C 3 HOH 51 552 51 HOH WAT A . C 3 HOH 52 553 52 HOH WAT A . C 3 HOH 53 554 53 HOH WAT A . C 3 HOH 54 555 54 HOH WAT A . C 3 HOH 55 556 55 HOH WAT A . C 3 HOH 56 557 56 HOH WAT A . C 3 HOH 57 558 57 HOH WAT A . C 3 HOH 58 559 58 HOH WAT A . C 3 HOH 59 560 59 HOH WAT A . C 3 HOH 60 561 60 HOH WAT A . C 3 HOH 61 562 61 HOH WAT A . C 3 HOH 62 563 62 HOH WAT A . C 3 HOH 63 564 63 HOH WAT A . C 3 HOH 64 565 64 HOH WAT A . C 3 HOH 65 566 65 HOH WAT A . C 3 HOH 66 567 66 HOH WAT A . C 3 HOH 67 568 67 HOH WAT A . C 3 HOH 68 569 68 HOH WAT A . C 3 HOH 69 570 69 HOH WAT A . C 3 HOH 70 571 70 HOH WAT A . C 3 HOH 71 572 71 HOH WAT A . C 3 HOH 72 573 72 HOH WAT A . C 3 HOH 73 574 73 HOH WAT A . C 3 HOH 74 575 74 HOH WAT A . C 3 HOH 75 576 75 HOH WAT A . C 3 HOH 76 577 76 HOH WAT A . C 3 HOH 77 578 77 HOH WAT A . C 3 HOH 78 579 78 HOH WAT A . C 3 HOH 79 580 79 HOH WAT A . C 3 HOH 80 581 80 HOH WAT A . C 3 HOH 81 582 81 HOH WAT A . C 3 HOH 82 583 82 HOH WAT A . C 3 HOH 83 584 83 HOH WAT A . C 3 HOH 84 585 84 HOH WAT A . C 3 HOH 85 586 85 HOH WAT A . C 3 HOH 86 587 86 HOH WAT A . C 3 HOH 87 588 87 HOH WAT A . C 3 HOH 88 589 88 HOH WAT A . C 3 HOH 89 590 89 HOH WAT A . C 3 HOH 90 591 90 HOH WAT A . C 3 HOH 91 592 91 HOH WAT A . C 3 HOH 92 593 92 HOH WAT A . C 3 HOH 93 594 93 HOH WAT A . C 3 HOH 94 595 94 HOH WAT A . C 3 HOH 95 596 95 HOH WAT A . C 3 HOH 96 597 96 HOH WAT A . C 3 HOH 97 598 97 HOH WAT A . C 3 HOH 98 599 98 HOH WAT A . C 3 HOH 99 600 99 HOH WAT A . C 3 HOH 100 601 100 HOH WAT A . C 3 HOH 101 602 101 HOH WAT A . C 3 HOH 102 603 102 HOH WAT A . C 3 HOH 103 604 103 HOH WAT A . C 3 HOH 104 605 104 HOH WAT A . C 3 HOH 105 606 105 HOH WAT A . C 3 HOH 106 607 106 HOH WAT A . C 3 HOH 107 608 107 HOH WAT A . C 3 HOH 108 609 108 HOH WAT A . C 3 HOH 109 610 109 HOH WAT A . C 3 HOH 110 611 110 HOH WAT A . C 3 HOH 111 612 111 HOH WAT A . C 3 HOH 112 613 112 HOH WAT A . C 3 HOH 113 614 113 HOH WAT A . C 3 HOH 114 615 114 HOH WAT A . C 3 HOH 115 616 115 HOH WAT A . C 3 HOH 116 617 116 HOH WAT A . C 3 HOH 117 618 117 HOH WAT A . C 3 HOH 118 619 118 HOH WAT A . C 3 HOH 119 620 119 HOH WAT A . C 3 HOH 120 621 120 HOH WAT A . C 3 HOH 121 622 121 HOH WAT A . C 3 HOH 122 623 122 HOH WAT A . C 3 HOH 123 624 123 HOH WAT A . C 3 HOH 124 625 124 HOH WAT A . C 3 HOH 125 626 125 HOH WAT A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 624 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-07-17 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 MOLREP phasing . ? 2 CNS refinement 1.1 ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 92 ? ? 38.82 62.85 2 1 SER A 103 ? ? 74.80 -14.38 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A PRO 9 ? CG ? A PRO 6 CG 2 1 Y 1 A PRO 9 ? CD ? A PRO 6 CD 3 1 Y 1 A ARG 196 ? CG ? A ARG 193 CG 4 1 Y 1 A ARG 196 ? CD ? A ARG 193 CD 5 1 Y 1 A ARG 196 ? NE ? A ARG 193 NE 6 1 Y 1 A ARG 196 ? CZ ? A ARG 193 CZ 7 1 Y 1 A ARG 196 ? NH1 ? A ARG 193 NH1 8 1 Y 1 A ARG 196 ? NH2 ? A ARG 193 NH2 9 1 Y 1 A ARG 199 ? CG ? A ARG 196 CG 10 1 Y 1 A ARG 199 ? CD ? A ARG 196 CD 11 1 Y 1 A ARG 199 ? NE ? A ARG 196 NE 12 1 Y 1 A ARG 199 ? CZ ? A ARG 196 CZ 13 1 Y 1 A ARG 199 ? NH1 ? A ARG 196 NH1 14 1 Y 1 A ARG 199 ? NH2 ? A ARG 196 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS 4 ? A HIS 1 2 1 Y 1 A MET 5 ? A MET 2 3 1 Y 1 A ASP 6 ? A ASP 3 4 1 Y 1 A ILE 7 ? A ILE 4 5 1 Y 1 A ARG 8 ? A ARG 5 6 1 Y 1 A GLY 223 ? A GLY 220 7 1 Y 1 A THR 224 ? A THR 221 8 1 Y 1 A THR 225 ? A THR 222 9 1 Y 1 A GLY 226 ? A GLY 223 10 1 Y 1 A GLU 227 ? A GLU 224 11 1 Y 1 A ARG 228 ? A ARG 225 12 1 Y 1 A ASP 229 ? A ASP 226 13 1 Y 1 A GLU 230 ? A GLU 227 14 1 Y 1 A ASP 231 ? A ASP 228 15 1 Y 1 A GLU 232 ? A GLU 229 16 1 Y 1 A GLU 233 ? A GLU 230 17 1 Y 1 A ALA 234 ? A ALA 231 18 1 Y 1 A ARG 235 ? A ARG 232 19 1 Y 1 A SER 236 ? A SER 233 20 1 Y 1 A ASP 237 ? A ASP 234 21 1 Y 1 A LEU 238 ? A LEU 235 22 1 Y 1 A ARG 239 ? A ARG 236 23 1 Y 1 A PRO 240 ? A PRO 237 24 1 Y 1 A GLY 241 ? A GLY 238 25 1 Y 1 A GLU 242 ? A GLU 239 26 1 Y 1 A PRO 243 ? A PRO 240 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACY C C N N 1 ACY O O N N 2 ACY OXT O N N 3 ACY CH3 C N N 4 ACY HXT H N N 5 ACY H1 H N N 6 ACY H2 H N N 7 ACY H3 H N N 8 ALA N N N N 9 ALA CA C N S 10 ALA C C N N 11 ALA O O N N 12 ALA CB C N N 13 ALA OXT O N N 14 ALA H H N N 15 ALA H2 H N N 16 ALA HA H N N 17 ALA HB1 H N N 18 ALA HB2 H N N 19 ALA HB3 H N N 20 ALA HXT H N N 21 ARG N N N N 22 ARG CA C N S 23 ARG C C N N 24 ARG O O N N 25 ARG CB C N N 26 ARG CG C N N 27 ARG CD C N N 28 ARG NE N N N 29 ARG CZ C N N 30 ARG NH1 N N N 31 ARG NH2 N N N 32 ARG OXT O N N 33 ARG H H N N 34 ARG H2 H N N 35 ARG HA H N N 36 ARG HB2 H N N 37 ARG HB3 H N N 38 ARG HG2 H N N 39 ARG HG3 H N N 40 ARG HD2 H N N 41 ARG HD3 H N N 42 ARG HE H N N 43 ARG HH11 H N N 44 ARG HH12 H N N 45 ARG HH21 H N N 46 ARG HH22 H N N 47 ARG HXT H N N 48 ASN N N N N 49 ASN CA C N S 50 ASN C C N N 51 ASN O O N N 52 ASN CB C N N 53 ASN CG C N N 54 ASN OD1 O N N 55 ASN ND2 N N N 56 ASN OXT O N N 57 ASN H H N N 58 ASN H2 H N N 59 ASN HA H N N 60 ASN HB2 H N N 61 ASN HB3 H N N 62 ASN HD21 H N N 63 ASN HD22 H N N 64 ASN HXT H N N 65 ASP N N N N 66 ASP CA C N S 67 ASP C C N N 68 ASP O O N N 69 ASP CB C N N 70 ASP CG C N N 71 ASP OD1 O N N 72 ASP OD2 O N N 73 ASP OXT O N N 74 ASP H H N N 75 ASP H2 H N N 76 ASP HA H N N 77 ASP HB2 H N N 78 ASP HB3 H N N 79 ASP HD2 H N N 80 ASP HXT H N N 81 CYS N N N N 82 CYS CA C N R 83 CYS C C N N 84 CYS O O N N 85 CYS CB C N N 86 CYS SG S N N 87 CYS OXT O N N 88 CYS H H N N 89 CYS H2 H N N 90 CYS HA H N N 91 CYS HB2 H N N 92 CYS HB3 H N N 93 CYS HG H N N 94 CYS HXT H N N 95 GLN N N N N 96 GLN CA C N S 97 GLN C C N N 98 GLN O O N N 99 GLN CB C N N 100 GLN CG C N N 101 GLN CD C N N 102 GLN OE1 O N N 103 GLN NE2 N N N 104 GLN OXT O N N 105 GLN H H N N 106 GLN H2 H N N 107 GLN HA H N N 108 GLN HB2 H N N 109 GLN HB3 H N N 110 GLN HG2 H N N 111 GLN HG3 H N N 112 GLN HE21 H N N 113 GLN HE22 H N N 114 GLN HXT H N N 115 GLU N N N N 116 GLU CA C N S 117 GLU C C N N 118 GLU O O N N 119 GLU CB C N N 120 GLU CG C N N 121 GLU CD C N N 122 GLU OE1 O N N 123 GLU OE2 O N N 124 GLU OXT O N N 125 GLU H H N N 126 GLU H2 H N N 127 GLU HA H N N 128 GLU HB2 H N N 129 GLU HB3 H N N 130 GLU HG2 H N N 131 GLU HG3 H N N 132 GLU HE2 H N N 133 GLU HXT H N N 134 GLY N N N N 135 GLY CA C N N 136 GLY C C N N 137 GLY O O N N 138 GLY OXT O N N 139 GLY H H N N 140 GLY H2 H N N 141 GLY HA2 H N N 142 GLY HA3 H N N 143 GLY HXT H N N 144 HIS N N N N 145 HIS CA C N S 146 HIS C C N N 147 HIS O O N N 148 HIS CB C N N 149 HIS CG C Y N 150 HIS ND1 N Y N 151 HIS CD2 C Y N 152 HIS CE1 C Y N 153 HIS NE2 N Y N 154 HIS OXT O N N 155 HIS H H N N 156 HIS H2 H N N 157 HIS HA H N N 158 HIS HB2 H N N 159 HIS HB3 H N N 160 HIS HD1 H N N 161 HIS HD2 H N N 162 HIS HE1 H N N 163 HIS HE2 H N N 164 HIS HXT H N N 165 HOH O O N N 166 HOH H1 H N N 167 HOH H2 H N N 168 ILE N N N N 169 ILE CA C N S 170 ILE C C N N 171 ILE O O N N 172 ILE CB C N S 173 ILE CG1 C N N 174 ILE CG2 C N N 175 ILE CD1 C N N 176 ILE OXT O N N 177 ILE H H N N 178 ILE H2 H N N 179 ILE HA H N N 180 ILE HB H N N 181 ILE HG12 H N N 182 ILE HG13 H N N 183 ILE HG21 H N N 184 ILE HG22 H N N 185 ILE HG23 H N N 186 ILE HD11 H N N 187 ILE HD12 H N N 188 ILE HD13 H N N 189 ILE HXT H N N 190 LEU N N N N 191 LEU CA C N S 192 LEU C C N N 193 LEU O O N N 194 LEU CB C N N 195 LEU CG C N N 196 LEU CD1 C N N 197 LEU CD2 C N N 198 LEU OXT O N N 199 LEU H H N N 200 LEU H2 H N N 201 LEU HA H N N 202 LEU HB2 H N N 203 LEU HB3 H N N 204 LEU HG H N N 205 LEU HD11 H N N 206 LEU HD12 H N N 207 LEU HD13 H N N 208 LEU HD21 H N N 209 LEU HD22 H N N 210 LEU HD23 H N N 211 LEU HXT H N N 212 LYS N N N N 213 LYS CA C N S 214 LYS C C N N 215 LYS O O N N 216 LYS CB C N N 217 LYS CG C N N 218 LYS CD C N N 219 LYS CE C N N 220 LYS NZ N N N 221 LYS OXT O N N 222 LYS H H N N 223 LYS H2 H N N 224 LYS HA H N N 225 LYS HB2 H N N 226 LYS HB3 H N N 227 LYS HG2 H N N 228 LYS HG3 H N N 229 LYS HD2 H N N 230 LYS HD3 H N N 231 LYS HE2 H N N 232 LYS HE3 H N N 233 LYS HZ1 H N N 234 LYS HZ2 H N N 235 LYS HZ3 H N N 236 LYS HXT H N N 237 MET N N N N 238 MET CA C N S 239 MET C C N N 240 MET O O N N 241 MET CB C N N 242 MET CG C N N 243 MET SD S N N 244 MET CE C N N 245 MET OXT O N N 246 MET H H N N 247 MET H2 H N N 248 MET HA H N N 249 MET HB2 H N N 250 MET HB3 H N N 251 MET HG2 H N N 252 MET HG3 H N N 253 MET HE1 H N N 254 MET HE2 H N N 255 MET HE3 H N N 256 MET HXT H N N 257 PHE N N N N 258 PHE CA C N S 259 PHE C C N N 260 PHE O O N N 261 PHE CB C N N 262 PHE CG C Y N 263 PHE CD1 C Y N 264 PHE CD2 C Y N 265 PHE CE1 C Y N 266 PHE CE2 C Y N 267 PHE CZ C Y N 268 PHE OXT O N N 269 PHE H H N N 270 PHE H2 H N N 271 PHE HA H N N 272 PHE HB2 H N N 273 PHE HB3 H N N 274 PHE HD1 H N N 275 PHE HD2 H N N 276 PHE HE1 H N N 277 PHE HE2 H N N 278 PHE HZ H N N 279 PHE HXT H N N 280 PRO N N N N 281 PRO CA C N S 282 PRO C C N N 283 PRO O O N N 284 PRO CB C N N 285 PRO CG C N N 286 PRO CD C N N 287 PRO OXT O N N 288 PRO H H N N 289 PRO HA H N N 290 PRO HB2 H N N 291 PRO HB3 H N N 292 PRO HG2 H N N 293 PRO HG3 H N N 294 PRO HD2 H N N 295 PRO HD3 H N N 296 PRO HXT H N N 297 SER N N N N 298 SER CA C N S 299 SER C C N N 300 SER O O N N 301 SER CB C N N 302 SER OG O N N 303 SER OXT O N N 304 SER H H N N 305 SER H2 H N N 306 SER HA H N N 307 SER HB2 H N N 308 SER HB3 H N N 309 SER HG H N N 310 SER HXT H N N 311 THR N N N N 312 THR CA C N S 313 THR C C N N 314 THR O O N N 315 THR CB C N R 316 THR OG1 O N N 317 THR CG2 C N N 318 THR OXT O N N 319 THR H H N N 320 THR H2 H N N 321 THR HA H N N 322 THR HB H N N 323 THR HG1 H N N 324 THR HG21 H N N 325 THR HG22 H N N 326 THR HG23 H N N 327 THR HXT H N N 328 TRP N N N N 329 TRP CA C N S 330 TRP C C N N 331 TRP O O N N 332 TRP CB C N N 333 TRP CG C Y N 334 TRP CD1 C Y N 335 TRP CD2 C Y N 336 TRP NE1 N Y N 337 TRP CE2 C Y N 338 TRP CE3 C Y N 339 TRP CZ2 C Y N 340 TRP CZ3 C Y N 341 TRP CH2 C Y N 342 TRP OXT O N N 343 TRP H H N N 344 TRP H2 H N N 345 TRP HA H N N 346 TRP HB2 H N N 347 TRP HB3 H N N 348 TRP HD1 H N N 349 TRP HE1 H N N 350 TRP HE3 H N N 351 TRP HZ2 H N N 352 TRP HZ3 H N N 353 TRP HH2 H N N 354 TRP HXT H N N 355 TYR N N N N 356 TYR CA C N S 357 TYR C C N N 358 TYR O O N N 359 TYR CB C N N 360 TYR CG C Y N 361 TYR CD1 C Y N 362 TYR CD2 C Y N 363 TYR CE1 C Y N 364 TYR CE2 C Y N 365 TYR CZ C Y N 366 TYR OH O N N 367 TYR OXT O N N 368 TYR H H N N 369 TYR H2 H N N 370 TYR HA H N N 371 TYR HB2 H N N 372 TYR HB3 H N N 373 TYR HD1 H N N 374 TYR HD2 H N N 375 TYR HE1 H N N 376 TYR HE2 H N N 377 TYR HH H N N 378 TYR HXT H N N 379 VAL N N N N 380 VAL CA C N S 381 VAL C C N N 382 VAL O O N N 383 VAL CB C N N 384 VAL CG1 C N N 385 VAL CG2 C N N 386 VAL OXT O N N 387 VAL H H N N 388 VAL H2 H N N 389 VAL HA H N N 390 VAL HB H N N 391 VAL HG11 H N N 392 VAL HG12 H N N 393 VAL HG13 H N N 394 VAL HG21 H N N 395 VAL HG22 H N N 396 VAL HG23 H N N 397 VAL HXT H N N 398 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACY C O doub N N 1 ACY C OXT sing N N 2 ACY C CH3 sing N N 3 ACY OXT HXT sing N N 4 ACY CH3 H1 sing N N 5 ACY CH3 H2 sing N N 6 ACY CH3 H3 sing N N 7 ALA N CA sing N N 8 ALA N H sing N N 9 ALA N H2 sing N N 10 ALA CA C sing N N 11 ALA CA CB sing N N 12 ALA CA HA sing N N 13 ALA C O doub N N 14 ALA C OXT sing N N 15 ALA CB HB1 sing N N 16 ALA CB HB2 sing N N 17 ALA CB HB3 sing N N 18 ALA OXT HXT sing N N 19 ARG N CA sing N N 20 ARG N H sing N N 21 ARG N H2 sing N N 22 ARG CA C sing N N 23 ARG CA CB sing N N 24 ARG CA HA sing N N 25 ARG C O doub N N 26 ARG C OXT sing N N 27 ARG CB CG sing N N 28 ARG CB HB2 sing N N 29 ARG CB HB3 sing N N 30 ARG CG CD sing N N 31 ARG CG HG2 sing N N 32 ARG CG HG3 sing N N 33 ARG CD NE sing N N 34 ARG CD HD2 sing N N 35 ARG CD HD3 sing N N 36 ARG NE CZ sing N N 37 ARG NE HE sing N N 38 ARG CZ NH1 sing N N 39 ARG CZ NH2 doub N N 40 ARG NH1 HH11 sing N N 41 ARG NH1 HH12 sing N N 42 ARG NH2 HH21 sing N N 43 ARG NH2 HH22 sing N N 44 ARG OXT HXT sing N N 45 ASN N CA sing N N 46 ASN N H sing N N 47 ASN N H2 sing N N 48 ASN CA C sing N N 49 ASN CA CB sing N N 50 ASN CA HA sing N N 51 ASN C O doub N N 52 ASN C OXT sing N N 53 ASN CB CG sing N N 54 ASN CB HB2 sing N N 55 ASN CB HB3 sing N N 56 ASN CG OD1 doub N N 57 ASN CG ND2 sing N N 58 ASN ND2 HD21 sing N N 59 ASN ND2 HD22 sing N N 60 ASN OXT HXT sing N N 61 ASP N CA sing N N 62 ASP N H sing N N 63 ASP N H2 sing N N 64 ASP CA C sing N N 65 ASP CA CB sing N N 66 ASP CA HA sing N N 67 ASP C O doub N N 68 ASP C OXT sing N N 69 ASP CB CG sing N N 70 ASP CB HB2 sing N N 71 ASP CB HB3 sing N N 72 ASP CG OD1 doub N N 73 ASP CG OD2 sing N N 74 ASP OD2 HD2 sing N N 75 ASP OXT HXT sing N N 76 CYS N CA sing N N 77 CYS N H sing N N 78 CYS N H2 sing N N 79 CYS CA C sing N N 80 CYS CA CB sing N N 81 CYS CA HA sing N N 82 CYS C O doub N N 83 CYS C OXT sing N N 84 CYS CB SG sing N N 85 CYS CB HB2 sing N N 86 CYS CB HB3 sing N N 87 CYS SG HG sing N N 88 CYS OXT HXT sing N N 89 GLN N CA sing N N 90 GLN N H sing N N 91 GLN N H2 sing N N 92 GLN CA C sing N N 93 GLN CA CB sing N N 94 GLN CA HA sing N N 95 GLN C O doub N N 96 GLN C OXT sing N N 97 GLN CB CG sing N N 98 GLN CB HB2 sing N N 99 GLN CB HB3 sing N N 100 GLN CG CD sing N N 101 GLN CG HG2 sing N N 102 GLN CG HG3 sing N N 103 GLN CD OE1 doub N N 104 GLN CD NE2 sing N N 105 GLN NE2 HE21 sing N N 106 GLN NE2 HE22 sing N N 107 GLN OXT HXT sing N N 108 GLU N CA sing N N 109 GLU N H sing N N 110 GLU N H2 sing N N 111 GLU CA C sing N N 112 GLU CA CB sing N N 113 GLU CA HA sing N N 114 GLU C O doub N N 115 GLU C OXT sing N N 116 GLU CB CG sing N N 117 GLU CB HB2 sing N N 118 GLU CB HB3 sing N N 119 GLU CG CD sing N N 120 GLU CG HG2 sing N N 121 GLU CG HG3 sing N N 122 GLU CD OE1 doub N N 123 GLU CD OE2 sing N N 124 GLU OE2 HE2 sing N N 125 GLU OXT HXT sing N N 126 GLY N CA sing N N 127 GLY N H sing N N 128 GLY N H2 sing N N 129 GLY CA C sing N N 130 GLY CA HA2 sing N N 131 GLY CA HA3 sing N N 132 GLY C O doub N N 133 GLY C OXT sing N N 134 GLY OXT HXT sing N N 135 HIS N CA sing N N 136 HIS N H sing N N 137 HIS N H2 sing N N 138 HIS CA C sing N N 139 HIS CA CB sing N N 140 HIS CA HA sing N N 141 HIS C O doub N N 142 HIS C OXT sing N N 143 HIS CB CG sing N N 144 HIS CB HB2 sing N N 145 HIS CB HB3 sing N N 146 HIS CG ND1 sing Y N 147 HIS CG CD2 doub Y N 148 HIS ND1 CE1 doub Y N 149 HIS ND1 HD1 sing N N 150 HIS CD2 NE2 sing Y N 151 HIS CD2 HD2 sing N N 152 HIS CE1 NE2 sing Y N 153 HIS CE1 HE1 sing N N 154 HIS NE2 HE2 sing N N 155 HIS OXT HXT sing N N 156 HOH O H1 sing N N 157 HOH O H2 sing N N 158 ILE N CA sing N N 159 ILE N H sing N N 160 ILE N H2 sing N N 161 ILE CA C sing N N 162 ILE CA CB sing N N 163 ILE CA HA sing N N 164 ILE C O doub N N 165 ILE C OXT sing N N 166 ILE CB CG1 sing N N 167 ILE CB CG2 sing N N 168 ILE CB HB sing N N 169 ILE CG1 CD1 sing N N 170 ILE CG1 HG12 sing N N 171 ILE CG1 HG13 sing N N 172 ILE CG2 HG21 sing N N 173 ILE CG2 HG22 sing N N 174 ILE CG2 HG23 sing N N 175 ILE CD1 HD11 sing N N 176 ILE CD1 HD12 sing N N 177 ILE CD1 HD13 sing N N 178 ILE OXT HXT sing N N 179 LEU N CA sing N N 180 LEU N H sing N N 181 LEU N H2 sing N N 182 LEU CA C sing N N 183 LEU CA CB sing N N 184 LEU CA HA sing N N 185 LEU C O doub N N 186 LEU C OXT sing N N 187 LEU CB CG sing N N 188 LEU CB HB2 sing N N 189 LEU CB HB3 sing N N 190 LEU CG CD1 sing N N 191 LEU CG CD2 sing N N 192 LEU CG HG sing N N 193 LEU CD1 HD11 sing N N 194 LEU CD1 HD12 sing N N 195 LEU CD1 HD13 sing N N 196 LEU CD2 HD21 sing N N 197 LEU CD2 HD22 sing N N 198 LEU CD2 HD23 sing N N 199 LEU OXT HXT sing N N 200 LYS N CA sing N N 201 LYS N H sing N N 202 LYS N H2 sing N N 203 LYS CA C sing N N 204 LYS CA CB sing N N 205 LYS CA HA sing N N 206 LYS C O doub N N 207 LYS C OXT sing N N 208 LYS CB CG sing N N 209 LYS CB HB2 sing N N 210 LYS CB HB3 sing N N 211 LYS CG CD sing N N 212 LYS CG HG2 sing N N 213 LYS CG HG3 sing N N 214 LYS CD CE sing N N 215 LYS CD HD2 sing N N 216 LYS CD HD3 sing N N 217 LYS CE NZ sing N N 218 LYS CE HE2 sing N N 219 LYS CE HE3 sing N N 220 LYS NZ HZ1 sing N N 221 LYS NZ HZ2 sing N N 222 LYS NZ HZ3 sing N N 223 LYS OXT HXT sing N N 224 MET N CA sing N N 225 MET N H sing N N 226 MET N H2 sing N N 227 MET CA C sing N N 228 MET CA CB sing N N 229 MET CA HA sing N N 230 MET C O doub N N 231 MET C OXT sing N N 232 MET CB CG sing N N 233 MET CB HB2 sing N N 234 MET CB HB3 sing N N 235 MET CG SD sing N N 236 MET CG HG2 sing N N 237 MET CG HG3 sing N N 238 MET SD CE sing N N 239 MET CE HE1 sing N N 240 MET CE HE2 sing N N 241 MET CE HE3 sing N N 242 MET OXT HXT sing N N 243 PHE N CA sing N N 244 PHE N H sing N N 245 PHE N H2 sing N N 246 PHE CA C sing N N 247 PHE CA CB sing N N 248 PHE CA HA sing N N 249 PHE C O doub N N 250 PHE C OXT sing N N 251 PHE CB CG sing N N 252 PHE CB HB2 sing N N 253 PHE CB HB3 sing N N 254 PHE CG CD1 doub Y N 255 PHE CG CD2 sing Y N 256 PHE CD1 CE1 sing Y N 257 PHE CD1 HD1 sing N N 258 PHE CD2 CE2 doub Y N 259 PHE CD2 HD2 sing N N 260 PHE CE1 CZ doub Y N 261 PHE CE1 HE1 sing N N 262 PHE CE2 CZ sing Y N 263 PHE CE2 HE2 sing N N 264 PHE CZ HZ sing N N 265 PHE OXT HXT sing N N 266 PRO N CA sing N N 267 PRO N CD sing N N 268 PRO N H sing N N 269 PRO CA C sing N N 270 PRO CA CB sing N N 271 PRO CA HA sing N N 272 PRO C O doub N N 273 PRO C OXT sing N N 274 PRO CB CG sing N N 275 PRO CB HB2 sing N N 276 PRO CB HB3 sing N N 277 PRO CG CD sing N N 278 PRO CG HG2 sing N N 279 PRO CG HG3 sing N N 280 PRO CD HD2 sing N N 281 PRO CD HD3 sing N N 282 PRO OXT HXT sing N N 283 SER N CA sing N N 284 SER N H sing N N 285 SER N H2 sing N N 286 SER CA C sing N N 287 SER CA CB sing N N 288 SER CA HA sing N N 289 SER C O doub N N 290 SER C OXT sing N N 291 SER CB OG sing N N 292 SER CB HB2 sing N N 293 SER CB HB3 sing N N 294 SER OG HG sing N N 295 SER OXT HXT sing N N 296 THR N CA sing N N 297 THR N H sing N N 298 THR N H2 sing N N 299 THR CA C sing N N 300 THR CA CB sing N N 301 THR CA HA sing N N 302 THR C O doub N N 303 THR C OXT sing N N 304 THR CB OG1 sing N N 305 THR CB CG2 sing N N 306 THR CB HB sing N N 307 THR OG1 HG1 sing N N 308 THR CG2 HG21 sing N N 309 THR CG2 HG22 sing N N 310 THR CG2 HG23 sing N N 311 THR OXT HXT sing N N 312 TRP N CA sing N N 313 TRP N H sing N N 314 TRP N H2 sing N N 315 TRP CA C sing N N 316 TRP CA CB sing N N 317 TRP CA HA sing N N 318 TRP C O doub N N 319 TRP C OXT sing N N 320 TRP CB CG sing N N 321 TRP CB HB2 sing N N 322 TRP CB HB3 sing N N 323 TRP CG CD1 doub Y N 324 TRP CG CD2 sing Y N 325 TRP CD1 NE1 sing Y N 326 TRP CD1 HD1 sing N N 327 TRP CD2 CE2 doub Y N 328 TRP CD2 CE3 sing Y N 329 TRP NE1 CE2 sing Y N 330 TRP NE1 HE1 sing N N 331 TRP CE2 CZ2 sing Y N 332 TRP CE3 CZ3 doub Y N 333 TRP CE3 HE3 sing N N 334 TRP CZ2 CH2 doub Y N 335 TRP CZ2 HZ2 sing N N 336 TRP CZ3 CH2 sing Y N 337 TRP CZ3 HZ3 sing N N 338 TRP CH2 HH2 sing N N 339 TRP OXT HXT sing N N 340 TYR N CA sing N N 341 TYR N H sing N N 342 TYR N H2 sing N N 343 TYR CA C sing N N 344 TYR CA CB sing N N 345 TYR CA HA sing N N 346 TYR C O doub N N 347 TYR C OXT sing N N 348 TYR CB CG sing N N 349 TYR CB HB2 sing N N 350 TYR CB HB3 sing N N 351 TYR CG CD1 doub Y N 352 TYR CG CD2 sing Y N 353 TYR CD1 CE1 sing Y N 354 TYR CD1 HD1 sing N N 355 TYR CD2 CE2 doub Y N 356 TYR CD2 HD2 sing N N 357 TYR CE1 CZ doub Y N 358 TYR CE1 HE1 sing N N 359 TYR CE2 CZ sing Y N 360 TYR CE2 HE2 sing N N 361 TYR CZ OH sing N N 362 TYR OH HH sing N N 363 TYR OXT HXT sing N N 364 VAL N CA sing N N 365 VAL N H sing N N 366 VAL N H2 sing N N 367 VAL CA C sing N N 368 VAL CA CB sing N N 369 VAL CA HA sing N N 370 VAL C O doub N N 371 VAL C OXT sing N N 372 VAL CB CG1 sing N N 373 VAL CB CG2 sing N N 374 VAL CB HB sing N N 375 VAL CG1 HG11 sing N N 376 VAL CG1 HG12 sing N N 377 VAL CG1 HG13 sing N N 378 VAL CG2 HG21 sing N N 379 VAL CG2 HG22 sing N N 380 VAL CG2 HG23 sing N N 381 VAL OXT HXT sing N N 382 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETIC ACID' ACY 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1WDU _pdbx_initial_refinement_model.details 'PDB ENTRY 1WDU' #