HEADER LYASE 15-MAR-07 2EJ5 TITLE CRYSTAL STRUCTURE OF GK2038 PROTEIN (ENOYL-COA HYDRATASE SUBUNIT II) TITLE 2 FROM GEOBACILLUS KAUSTOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOYL-COA HYDRATASE SUBUNIT II; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PHENYLACETIC ACID CATABOLISM, GK2038 PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS KAUSTOPHILUS; SOURCE 3 ORGANISM_TAXID: 1462; SOURCE 4 GENE: GK2038; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-RIL-X; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-15B KEYWDS STRUCTURAL GENOMICS, GK2038, ENOYL-COA HYDRATASE SUBUNIT II, KEYWDS 2 GEOBACILLUS KAUSTOPHILUS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 3 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR N.OKAZAKI,Y.AGARI,A.EBIHARA,L.CHEN,Z.Q.FU,J.CHRZAS,B.C.WANG, AUTHOR 2 S.KURAMITSU,M.YAMAMOTO,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 3 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 13-MAR-24 2EJ5 1 REMARK REVDAT 3 13-JUL-11 2EJ5 1 VERSN REVDAT 2 24-FEB-09 2EJ5 1 VERSN REVDAT 1 18-SEP-07 2EJ5 0 JRNL AUTH N.OKAZAKI,Y.AGARI,A.EBIHARA,L.CHEN,Z.Q.FU,J.CHRZAS,B.C.WANG, JRNL AUTH 2 S.KURAMITSU,M.YAMAMOTO,S.YOKOYAMA JRNL TITL CRYSTAL STRUCTURE OF GK2038 PROTEIN (ENOYL-COA HYDRATASE JRNL TITL 2 SUBUNIT II) FROM GEOBACILLUS KAUSTOPHILUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 34355 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1802 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2504 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE SET COUNT : 135 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3864 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 466 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.197 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.175 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.119 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.154 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3938 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5318 ; 1.597 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 499 ; 5.705 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 174 ;32.288 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 687 ;13.793 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;18.825 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 597 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2966 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1796 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2707 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 373 ; 0.158 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 138 ; 0.182 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 45 ; 0.189 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2587 ; 1.109 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3957 ; 1.712 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1548 ; 2.973 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1360 ; 4.510 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2EJ5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000026727. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-06; 31-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SPRING-8; APS REMARK 200 BEAMLINE : BL26B2; 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97894; 0.97901 REMARK 200 MONOCHROMATOR : BENDING MAGNET; BENDING MAGNET REMARK 200 OPTICS : MIRRORS; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210; MARMOSAIC REMARK 200 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36275 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 20.90 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.90 REMARK 200 R MERGE FOR SHELL (I) : 0.26600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 12.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG3350, 0.1M MAGNESIUM FORMATE, REMARK 280 PH8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K. 15% REMARK 280 PEG3350, 0.09M MAGNESIUM FORMATE, PH8.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 58.50400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.50400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.50400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.50400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 58.50400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.50400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 58.50400 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 58.50400 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 58.50400 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 58.50400 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 58.50400 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 58.50400 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 58.50400 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 58.50400 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 58.50400 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 58.50400 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 58.50400 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 58.50400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TRIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 10480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 -58.50400 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 -58.50400 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -58.50400 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 58.50400 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 9930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 -58.50400 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 -58.50400 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -58.50400 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 58.50400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 278 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 324 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 280 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 350 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 69 REMARK 465 GLY A 70 REMARK 465 VAL A 71 REMARK 465 THR A 72 REMARK 465 GLU A 73 REMARK 465 GLU A 74 REMARK 465 MET A 75 REMARK 465 GLY B 70 REMARK 465 VAL B 71 REMARK 465 THR B 72 REMARK 465 GLU B 73 REMARK 465 GLU B 74 REMARK 465 MET B 75 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 150 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 MET B 112 CG - SD - CE ANGL. DEV. = -10.1 DEGREES REMARK 500 LEU B 175 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 63 117.98 -170.34 REMARK 500 PRO A 202 86.27 -68.99 REMARK 500 PHE A 249 28.13 -72.92 REMARK 500 GLU A 250 13.36 -145.60 REMARK 500 PRO B 202 87.66 -64.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GKA001002038.1 RELATED DB: TARGETDB DBREF 2EJ5 A 3 259 UNP Q5KYB3 Q5KYB3_GEOKA 1 257 DBREF 2EJ5 B 3 259 UNP Q5KYB3 Q5KYB3_GEOKA 1 257 SEQRES 1 A 257 MET TYR GLU THR ILE ARG TYR GLU VAL LYS GLY GLN VAL SEQRES 2 A 257 ALA TRP LEU THR LEU ASN ARG PRO ASP GLN LEU ASN ALA SEQRES 3 A 257 PHE THR GLU GLN MET ASN ALA GLU VAL THR LYS ALA LEU SEQRES 4 A 257 LYS GLN ALA GLY ALA ASP PRO ASN VAL ARG CYS VAL VAL SEQRES 5 A 257 ILE THR GLY ALA GLY ARG ALA PHE CYS ALA GLY GLU ASP SEQRES 6 A 257 LEU SER GLY VAL THR GLU GLU MET ASP HIS GLY ASP VAL SEQRES 7 A 257 LEU ARG SER ARG TYR ALA PRO MET MET LYS ALA LEU HIS SEQRES 8 A 257 HIS LEU GLU LYS PRO VAL VAL ALA ALA VAL ASN GLY ALA SEQRES 9 A 257 ALA ALA GLY ALA GLY MET SER LEU ALA LEU ALA CYS ASP SEQRES 10 A 257 PHE ARG LEU LEU SER GLU LYS ALA SER PHE ALA PRO ALA SEQRES 11 A 257 PHE ILE HIS VAL GLY LEU VAL PRO ASP ALA GLY HIS LEU SEQRES 12 A 257 TYR TYR LEU PRO ARG LEU VAL GLY ARG ALA LYS ALA LEU SEQRES 13 A 257 GLU LEU ALA VAL LEU GLY GLU LYS VAL THR ALA GLU GLU SEQRES 14 A 257 ALA ALA ALA LEU GLY LEU ALA THR LYS VAL ILE PRO LEU SEQRES 15 A 257 SER ASP TRP GLU GLU GLU VAL LYS GLN PHE ALA GLU ARG SEQRES 16 A 257 LEU SER ALA MET PRO THR LYS ALA ILE GLY LEU ILE LYS SEQRES 17 A 257 ARG LEU LEU ARG GLU SER GLU GLU THR THR PHE ASP ARG SEQRES 18 A 257 TYR LEU GLU ARG GLU ALA GLU CYS GLN ARG ILE ALA GLY SEQRES 19 A 257 LEU THR SER ASP HIS ARG GLU GLY VAL LYS ALA PHE PHE SEQRES 20 A 257 GLU LYS ARG LYS PRO LEU PHE GLN GLY ASN SEQRES 1 B 257 MET TYR GLU THR ILE ARG TYR GLU VAL LYS GLY GLN VAL SEQRES 2 B 257 ALA TRP LEU THR LEU ASN ARG PRO ASP GLN LEU ASN ALA SEQRES 3 B 257 PHE THR GLU GLN MET ASN ALA GLU VAL THR LYS ALA LEU SEQRES 4 B 257 LYS GLN ALA GLY ALA ASP PRO ASN VAL ARG CYS VAL VAL SEQRES 5 B 257 ILE THR GLY ALA GLY ARG ALA PHE CYS ALA GLY GLU ASP SEQRES 6 B 257 LEU SER GLY VAL THR GLU GLU MET ASP HIS GLY ASP VAL SEQRES 7 B 257 LEU ARG SER ARG TYR ALA PRO MET MET LYS ALA LEU HIS SEQRES 8 B 257 HIS LEU GLU LYS PRO VAL VAL ALA ALA VAL ASN GLY ALA SEQRES 9 B 257 ALA ALA GLY ALA GLY MET SER LEU ALA LEU ALA CYS ASP SEQRES 10 B 257 PHE ARG LEU LEU SER GLU LYS ALA SER PHE ALA PRO ALA SEQRES 11 B 257 PHE ILE HIS VAL GLY LEU VAL PRO ASP ALA GLY HIS LEU SEQRES 12 B 257 TYR TYR LEU PRO ARG LEU VAL GLY ARG ALA LYS ALA LEU SEQRES 13 B 257 GLU LEU ALA VAL LEU GLY GLU LYS VAL THR ALA GLU GLU SEQRES 14 B 257 ALA ALA ALA LEU GLY LEU ALA THR LYS VAL ILE PRO LEU SEQRES 15 B 257 SER ASP TRP GLU GLU GLU VAL LYS GLN PHE ALA GLU ARG SEQRES 16 B 257 LEU SER ALA MET PRO THR LYS ALA ILE GLY LEU ILE LYS SEQRES 17 B 257 ARG LEU LEU ARG GLU SER GLU GLU THR THR PHE ASP ARG SEQRES 18 B 257 TYR LEU GLU ARG GLU ALA GLU CYS GLN ARG ILE ALA GLY SEQRES 19 B 257 LEU THR SER ASP HIS ARG GLU GLY VAL LYS ALA PHE PHE SEQRES 20 B 257 GLU LYS ARG LYS PRO LEU PHE GLN GLY ASN FORMUL 3 HOH *466(H2 O) HELIX 1 1 ARG A 22 LEU A 26 5 5 HELIX 2 2 THR A 30 ASP A 47 1 18 HELIX 3 3 ASP A 76 ARG A 84 1 9 HELIX 4 4 ARG A 84 LEU A 95 1 12 HELIX 5 5 GLY A 109 CYS A 118 1 10 HELIX 6 6 ALA A 132 GLY A 137 5 6 HELIX 7 7 GLY A 143 GLY A 153 1 11 HELIX 8 8 GLY A 153 GLY A 164 1 12 HELIX 9 9 ALA A 169 GLY A 176 1 8 HELIX 10 10 PRO A 183 SER A 185 5 3 HELIX 11 11 ASP A 186 ALA A 200 1 15 HELIX 12 12 PRO A 202 THR A 219 1 18 HELIX 13 13 THR A 220 THR A 238 1 19 HELIX 14 14 THR A 238 PHE A 249 1 12 HELIX 15 15 ARG B 22 LEU B 26 5 5 HELIX 16 16 THR B 30 ASP B 47 1 18 HELIX 17 17 ASP B 76 ARG B 84 1 9 HELIX 18 18 ARG B 84 LEU B 95 1 12 HELIX 19 19 GLY B 109 CYS B 118 1 10 HELIX 20 20 ALA B 132 GLY B 137 5 6 HELIX 21 21 GLY B 143 GLY B 153 1 11 HELIX 22 22 GLY B 153 GLY B 164 1 12 HELIX 23 23 ALA B 169 GLY B 176 1 8 HELIX 24 24 PRO B 183 SER B 185 5 3 HELIX 25 25 ASP B 186 MET B 201 1 16 HELIX 26 26 PRO B 202 SER B 216 1 15 HELIX 27 27 THR B 220 LEU B 237 1 18 HELIX 28 28 THR B 238 GLU B 250 1 13 SHEET 1 A 6 ILE A 7 LYS A 12 0 SHEET 2 A 6 VAL A 15 LEU A 20 -1 O TRP A 17 N GLU A 10 SHEET 3 A 6 CYS A 52 GLY A 57 1 O VAL A 54 N LEU A 18 SHEET 4 A 6 VAL A 99 VAL A 103 1 O ALA A 102 N ILE A 55 SHEET 5 A 6 PHE A 120 SER A 124 1 O PHE A 120 N ALA A 101 SHEET 6 A 6 LYS A 180 ILE A 182 1 O ILE A 182 N LEU A 123 SHEET 1 B 3 ALA A 106 ALA A 108 0 SHEET 2 B 3 SER A 128 ALA A 130 1 O ALA A 130 N ALA A 107 SHEET 3 B 3 VAL A 167 THR A 168 -1 O VAL A 167 N PHE A 129 SHEET 1 C 6 ILE B 7 LYS B 12 0 SHEET 2 C 6 VAL B 15 LEU B 20 -1 O TRP B 17 N GLU B 10 SHEET 3 C 6 CYS B 52 GLY B 57 1 O VAL B 54 N LEU B 18 SHEET 4 C 6 VAL B 99 VAL B 103 1 O VAL B 100 N VAL B 53 SHEET 5 C 6 PHE B 120 SER B 124 1 O PHE B 120 N ALA B 101 SHEET 6 C 6 LYS B 180 ILE B 182 1 O ILE B 182 N LEU B 123 SHEET 1 D 3 ALA B 106 ALA B 108 0 SHEET 2 D 3 SER B 128 ALA B 130 1 O ALA B 130 N ALA B 107 SHEET 3 D 3 VAL B 167 THR B 168 -1 O VAL B 167 N PHE B 129 CRYST1 117.008 117.008 117.008 90.00 90.00 90.00 P 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008546 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008546 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008546 0.00000