HEADER PROTEIN BINDING 23-MAR-07 2EKK TITLE SOLUTION STRUCTURE OF RUH-074, A HUMAN UBA DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBA DOMAIN FROM E3 UBIQUITIN-PROTEIN LIGASE HUWE1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HECT, UBA AND WWE DOMAIN-CONTAINING PROTEIN 1, URE-B1, MCL-1 COMPND 5 UBIQUITIN LIGASE E3, MULE, ARF-BINDING PROTEIN 1, ARF-BP1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: P060529-20; SOURCE 7 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS UBIQUITIN ASSOCIATED DOMAIN, UBA, COMPACT THREE HELIX BUNDLE, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.KITASAKA,A.Z.M.RUHUL MOMEN,H.HIROTA,Y.MUTO,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2EKK 1 REMARK SEQADV REVDAT 2 24-FEB-09 2EKK 1 VERSN REVDAT 1 25-SEP-07 2EKK 0 JRNL AUTH S.KITASAKA,A.Z.M.RUHUL MOMEN,H.HIROTA,Y.MUTO,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RUH-074, A HUMAN UBA DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.6, CYANA 1.07 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EKK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000026778. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.25MM DOMAIN U-15N, 13C; 20MM D REMARK 210 -TRIS-HCL (PH7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 90%H2O, REMARK 210 10%D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.04, REMARK 210 KUJIRA 0.955 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS A 25 H ALA A 29 1.52 REMARK 500 O ALA A 29 H THR A 33 1.52 REMARK 500 O GLU A 28 H ASN A 32 1.52 REMARK 500 O THR A 40 H LEU A 44 1.54 REMARK 500 O GLN A 10 H GLN A 14 1.57 REMARK 500 O GLN A 11 H GLN A 15 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 8 -163.28 -57.52 REMARK 500 1 GLN A 11 -71.97 -38.95 REMARK 500 1 THR A 33 -160.21 -70.89 REMARK 500 1 SER A 34 -48.66 -143.33 REMARK 500 2 VAL A 8 -166.66 -56.83 REMARK 500 2 GLN A 11 -71.49 -38.97 REMARK 500 2 ALA A 29 -70.26 -52.30 REMARK 500 2 THR A 33 -167.02 -73.85 REMARK 500 2 SER A 34 -45.88 -134.66 REMARK 500 3 SER A 2 88.51 63.03 REMARK 500 3 GLN A 11 -72.04 -38.86 REMARK 500 3 ALA A 29 -70.37 -48.29 REMARK 500 3 THR A 33 -160.37 -75.12 REMARK 500 3 SER A 34 -46.38 -144.45 REMARK 500 4 VAL A 8 -166.42 -60.61 REMARK 500 4 GLN A 11 -71.86 -38.90 REMARK 500 4 ALA A 29 -70.97 -50.79 REMARK 500 4 THR A 33 -163.33 -70.80 REMARK 500 4 SER A 34 -48.66 -141.17 REMARK 500 5 SER A 2 79.47 -150.62 REMARK 500 5 SER A 6 86.32 -153.83 REMARK 500 5 GLN A 11 -71.91 -38.88 REMARK 500 5 THR A 33 -147.97 -70.96 REMARK 500 5 SER A 34 -44.75 -157.56 REMARK 500 6 SER A 2 78.25 65.84 REMARK 500 6 SER A 3 78.25 -160.38 REMARK 500 6 SER A 5 146.11 -178.85 REMARK 500 6 SER A 6 -75.78 65.11 REMARK 500 6 GLN A 11 -72.10 -39.93 REMARK 500 6 ALA A 29 -72.59 -46.97 REMARK 500 6 THR A 33 -144.00 -94.25 REMARK 500 6 SER A 34 -44.25 -160.28 REMARK 500 7 SER A 5 88.06 62.81 REMARK 500 7 SER A 6 -58.84 -154.65 REMARK 500 7 VAL A 8 -166.24 -59.33 REMARK 500 7 GLN A 11 -72.01 -39.43 REMARK 500 7 ALA A 29 -71.36 -52.71 REMARK 500 7 THR A 33 -141.74 -74.55 REMARK 500 7 SER A 34 -44.48 -160.92 REMARK 500 8 SER A 3 114.98 62.22 REMARK 500 8 GLN A 11 -72.02 -38.82 REMARK 500 8 ALA A 29 -71.66 -52.10 REMARK 500 8 THR A 33 -157.78 -75.41 REMARK 500 8 SER A 34 -50.42 -145.62 REMARK 500 9 SER A 5 141.20 -174.18 REMARK 500 9 VAL A 8 -164.93 -66.33 REMARK 500 9 GLN A 11 -72.04 -38.80 REMARK 500 9 ALA A 29 -71.76 -51.12 REMARK 500 9 THR A 33 -151.03 -72.62 REMARK 500 9 SER A 34 -45.87 -151.93 REMARK 500 REMARK 500 THIS ENTRY HAS 108 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002001550.1 RELATED DB: TARGETDB DBREF 2EKK A 8 47 UNP Q7Z6Z7 HUWE1_HUMAN 1317 1356 SEQADV 2EKK GLY A 1 UNP Q7Z6Z7 EXPRESSION TAG SEQADV 2EKK SER A 2 UNP Q7Z6Z7 EXPRESSION TAG SEQADV 2EKK SER A 3 UNP Q7Z6Z7 EXPRESSION TAG SEQADV 2EKK GLY A 4 UNP Q7Z6Z7 EXPRESSION TAG SEQADV 2EKK SER A 5 UNP Q7Z6Z7 EXPRESSION TAG SEQADV 2EKK SER A 6 UNP Q7Z6Z7 EXPRESSION TAG SEQADV 2EKK GLY A 7 UNP Q7Z6Z7 EXPRESSION TAG SEQRES 1 A 47 GLY SER SER GLY SER SER GLY VAL ASN GLN GLN GLN LEU SEQRES 2 A 47 GLN GLN LEU MET ASP MET GLY PHE THR ARG GLU HIS ALA SEQRES 3 A 47 MET GLU ALA LEU LEU ASN THR SER THR MET GLU GLN ALA SEQRES 4 A 47 THR GLU TYR LEU LEU THR HIS PRO HELIX 1 1 ASN A 9 PHE A 21 1 13 HELIX 2 2 THR A 22 THR A 33 1 12 HELIX 3 3 THR A 35 THR A 45 1 11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1