HEADER SIGNALING PROTEIN 26-MAR-07 2EKX TITLE SOLUTION STRUCTURE OF THE HUMAN BMX SH2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOPLASMIC TYROSINE-PROTEIN KINASE BMX; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH2 DOMAIN; COMPND 5 SYNONYM: BONE MARROW TYROSINE KINASE GENE IN CHROMOSOME X PROTEIN, COMPND 6 EPITHELIAL AND ENDOTHELIAL TYROSINE KINASE, ETK, NTK38; COMPND 7 EC: 2.7.10.2; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BMX; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P061225-65; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS SH2 DOMAIN, PHOSPHOTYROSINE BINDING DOMAIN, PROTEIN TYROSINE KINASE, KEYWDS 2 SIGNAL TRANSDUCTION, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT KEYWDS 3 ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.KASAI,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2EKX 1 REMARK SEQADV REVDAT 2 24-FEB-09 2EKX 1 VERSN REVDAT 1 02-OCT-07 2EKX 0 JRNL AUTH T.KASAI,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE HUMAN BMX SH2 DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EKX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000026791. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.13MM SH2 DOMAIN U-15N, 13C; REMARK 210 20MM D-TRIS-HCL(PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9810, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 42.23 36.08 REMARK 500 1 SER A 6 28.06 38.97 REMARK 500 1 TYR A 11 170.29 -46.00 REMARK 500 1 PHE A 14 96.82 -61.72 REMARK 500 1 ASN A 17 104.58 -57.95 REMARK 500 1 ASN A 81 30.23 73.31 REMARK 500 1 SER A 98 173.89 -48.91 REMARK 500 1 ALA A 99 -57.34 -122.80 REMARK 500 1 THR A 103 150.52 -39.60 REMARK 500 2 LEU A 8 35.46 -97.30 REMARK 500 2 PHE A 14 100.35 -59.93 REMARK 500 2 GLU A 33 115.90 -39.62 REMARK 500 2 ALA A 35 146.30 -37.61 REMARK 500 2 LYS A 59 -72.22 -35.87 REMARK 500 2 GLU A 73 32.68 -86.60 REMARK 500 2 ASN A 74 45.59 39.16 REMARK 500 2 ILE A 102 103.60 -51.06 REMARK 500 2 THR A 103 162.35 -42.03 REMARK 500 2 LEU A 105 116.49 -37.68 REMARK 500 2 ARG A 106 -70.50 -80.49 REMARK 500 3 ASP A 10 48.78 -102.91 REMARK 500 3 ALA A 15 -61.09 -102.66 REMARK 500 3 GLU A 33 106.83 -36.55 REMARK 500 3 ALA A 35 154.09 -38.93 REMARK 500 3 SER A 42 -65.69 -93.45 REMARK 500 3 MET A 46 -179.28 -65.18 REMARK 500 3 GLU A 73 40.26 -85.22 REMARK 500 3 ASN A 74 34.10 35.85 REMARK 500 3 ASN A 81 39.37 74.48 REMARK 500 3 ARG A 104 95.89 -53.77 REMARK 500 4 SER A 3 154.21 -49.28 REMARK 500 4 TYR A 11 168.26 -44.00 REMARK 500 4 PHE A 14 100.67 -57.70 REMARK 500 4 SER A 41 152.59 -45.50 REMARK 500 4 SER A 42 -74.42 -59.48 REMARK 500 4 GLN A 43 55.20 -117.35 REMARK 500 4 ASN A 74 37.95 73.96 REMARK 500 4 SER A 98 172.05 -49.80 REMARK 500 5 LEU A 8 43.33 -108.80 REMARK 500 5 TYR A 11 -178.76 -59.71 REMARK 500 5 SER A 41 -177.62 -53.79 REMARK 500 5 SER A 42 72.96 -67.44 REMARK 500 5 GLN A 43 43.92 36.32 REMARK 500 5 MET A 46 179.37 -51.38 REMARK 500 5 ALA A 55 177.20 -55.13 REMARK 500 5 LYS A 60 -66.04 -123.43 REMARK 500 5 VAL A 68 99.66 -69.04 REMARK 500 5 GLU A 73 39.92 -94.29 REMARK 500 5 ILE A 102 122.67 -37.61 REMARK 500 5 LEU A 105 100.68 -57.55 REMARK 500 REMARK 500 THIS ENTRY HAS 218 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002011645.2 RELATED DB: TARGETDB DBREF 2EKX A 8 110 UNP P51813 BMX_HUMAN 291 393 SEQADV 2EKX GLY A 1 UNP P51813 EXPRESSION TAG SEQADV 2EKX SER A 2 UNP P51813 EXPRESSION TAG SEQADV 2EKX SER A 3 UNP P51813 EXPRESSION TAG SEQADV 2EKX GLY A 4 UNP P51813 EXPRESSION TAG SEQADV 2EKX SER A 5 UNP P51813 EXPRESSION TAG SEQADV 2EKX SER A 6 UNP P51813 EXPRESSION TAG SEQADV 2EKX GLY A 7 UNP P51813 EXPRESSION TAG SEQRES 1 A 110 GLY SER SER GLY SER SER GLY LEU ASP ASP TYR ASP TRP SEQRES 2 A 110 PHE ALA GLY ASN ILE SER ARG SER GLN SER GLU GLN LEU SEQRES 3 A 110 LEU ARG GLN LYS GLY LYS GLU GLY ALA PHE MET VAL ARG SEQRES 4 A 110 ASN SER SER GLN VAL GLY MET TYR THR VAL SER LEU PHE SEQRES 5 A 110 SER LYS ALA VAL ASN ASP LYS LYS GLY THR VAL LYS HIS SEQRES 6 A 110 TYR HIS VAL HIS THR ASN ALA GLU ASN LYS LEU TYR LEU SEQRES 7 A 110 ALA GLU ASN TYR CYS PHE ASP SER ILE PRO LYS LEU ILE SEQRES 8 A 110 HIS TYR HIS GLN HIS ASN SER ALA GLY MET ILE THR ARG SEQRES 9 A 110 LEU ARG HIS PRO VAL SER HELIX 1 1 SER A 19 LYS A 30 1 12 HELIX 2 2 SER A 86 ASN A 97 1 12 SHEET 1 A 4 LYS A 64 HIS A 67 0 SHEET 2 A 4 TYR A 47 LEU A 51 -1 N LEU A 51 O LYS A 64 SHEET 3 A 4 ALA A 35 ASN A 40 -1 N ARG A 39 O THR A 48 SHEET 4 A 4 HIS A 107 PRO A 108 1 O HIS A 107 N PHE A 36 SHEET 1 B 2 HIS A 69 THR A 70 0 SHEET 2 B 2 LEU A 76 TYR A 77 -1 O TYR A 77 N HIS A 69 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1