HEADER HYDROLASE 28-MAR-07 2ENX TITLE STRUCTURE OF THE FAMILY II INORGANIC PYROPHOSPHATASE FROM TITLE 2 STREPTOCOCCUS AGALACTIAE AT 2.8 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANGANESE-DEPENDENT INORGANIC PYROPHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FAMILY II INORGANIC PYROPHOSPHATASE, IMIDODIPHOSPHATE; COMPND 5 EC: 3.6.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS AGALACTIAE; SOURCE 3 ORGANISM_TAXID: 205921; SOURCE 4 STRAIN: A909; SOURCE 5 GENE: PPAC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX4T3 KEYWDS STREPTOCOCCUS AGALACTIAE, FAMILY II, INORGANIC, PYROPHOSPHATASE, KEYWDS 2 SIGNALLING, PHOSPHORYLATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.K.RANTANEN,L.LEHTIO,L.RAJAGOPAL,C.E.RUBENS,A.GOLDMAN REVDAT 5 25-OCT-23 2ENX 1 REMARK LINK REVDAT 4 13-JUL-11 2ENX 1 VERSN REVDAT 3 24-FEB-09 2ENX 1 VERSN REVDAT 2 12-JUN-07 2ENX 1 AUTHOR JRNL REVDAT 1 29-MAY-07 2ENX 0 JRNL AUTH M.K.RANTANEN,L.LEHTIO,L.RAJAGOPAL,C.E.RUBENS,A.GOLDMAN JRNL TITL STRUCTURE OF THE STREPTOCOCCUS AGALACTIAE FAMILY II JRNL TITL 2 INORGANIC PYROPHOSPHATASE AT 2.80 A RESOLUTION JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 63 738 2007 JRNL REFN ISSN 0907-4449 JRNL PMID 17505113 JRNL DOI 10.1107/S0907444907019695 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19668 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1036 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1356 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.3680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4714 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 155 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.20000 REMARK 3 B22 (A**2) : -1.20000 REMARK 3 B33 (A**2) : 1.80000 REMARK 3 B12 (A**2) : -0.60000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.548 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.380 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.284 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.887 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.899 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.807 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4834 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6582 ; 1.513 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 618 ; 6.247 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 214 ;40.281 ;26.075 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 804 ;19.307 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;17.653 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 784 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3616 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2318 ; 0.237 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3358 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 225 ; 0.177 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 57 ; 0.181 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.092 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 311 4 REMARK 3 1 B 2 B 311 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 2357 ; 0.32 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2ENX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000026891. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20700 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 19.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : 0.14000 REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.30000 REMARK 200 R SYM FOR SHELL (I) : 0.30000 REMARK 200 FOR SHELL : 6.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1I74 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4M AMMONIUM PHOSPHATE MONOBASIC, PH REMARK 280 4.2, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 90.98000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.52733 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 44.20333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 90.98000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 52.52733 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 44.20333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 90.98000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 52.52733 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 44.20333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 90.98000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 52.52733 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 44.20333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 90.98000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 52.52733 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 44.20333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 90.98000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 52.52733 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 44.20333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 105.05465 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 88.40667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 105.05465 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 88.40667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 105.05465 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 88.40667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 105.05465 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 88.40667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 105.05465 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 88.40667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 105.05465 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 88.40667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE BIOLOGICAL ASSEMBLY IS GENERATED REMARK 300 BY THE TWO FOLD AXIS: -X+1, -Y, Z+3/2. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 -181.96000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 105.05465 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 88.40667 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 34 56.21 -103.73 REMARK 500 ASN A 79 -18.51 -164.48 REMARK 500 ILE A 85 154.89 -48.23 REMARK 500 ASN A 104 43.25 38.10 REMARK 500 ARG A 114 86.62 -152.69 REMARK 500 PRO A 158 15.53 -67.54 REMARK 500 ILE A 202 4.07 -59.88 REMARK 500 ASP A 203 24.72 -140.69 REMARK 500 ASP A 205 85.84 -155.88 REMARK 500 SER A 262 61.99 62.68 REMARK 500 ASN A 272 40.35 -106.73 REMARK 500 ASN A 286 40.29 70.34 REMARK 500 ASN A 287 3.90 80.08 REMARK 500 VAL A 301 -61.40 -126.26 REMARK 500 ALA B 67 -33.93 -31.34 REMARK 500 ASN B 79 -24.85 -145.06 REMARK 500 ALA B 103 144.68 174.78 REMARK 500 LEU B 154 60.51 39.98 REMARK 500 ASN B 192 88.97 -58.31 REMARK 500 LEU B 230 -37.48 -37.14 REMARK 500 GLU B 234 -72.06 -39.62 REMARK 500 SER B 262 53.31 70.31 REMARK 500 ASN B 286 48.83 22.47 REMARK 500 ASN B 287 4.73 89.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 9 NE2 REMARK 620 2 ASP A 13 OD2 78.5 REMARK 620 3 ASP A 77 OD1 82.0 138.8 REMARK 620 4 2PN A1001 O5 86.2 97.4 117.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 15 OD2 REMARK 620 2 ASP A 77 OD2 79.6 REMARK 620 3 HIS A 99 NE2 85.1 73.0 REMARK 620 4 ASP A 151 OD2 91.0 159.3 88.0 REMARK 620 5 2PN A1001 O4 159.5 99.9 75.3 82.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 2PN A1001 O6 REMARK 620 2 2PN A1001 O3 78.0 REMARK 620 3 HOH A1099 O 58.1 74.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 403 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 9 NE2 REMARK 620 2 ASP B 13 OD2 109.3 REMARK 620 3 ASP B 77 OD1 96.7 111.8 REMARK 620 4 2PN B1002 O5 97.3 103.0 135.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 404 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 15 OD2 REMARK 620 2 ASP B 77 OD2 92.9 REMARK 620 3 HIS B 99 NE2 90.8 91.9 REMARK 620 4 ASP B 151 OD2 89.7 177.1 86.8 REMARK 620 5 2PN B1002 O4 178.2 88.9 89.0 88.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 2PN B1002 O6 REMARK 620 2 2PN B1002 O3 72.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2PN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRP A 1031 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2PN B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRP B 2031 DBREF 2ENX A 2 311 UNP Q3K0B5 Q3K0B5_STRA1 2 311 DBREF 2ENX B 2 311 UNP Q3K0B5 Q3K0B5_STRA1 2 311 SEQRES 1 A 310 SER LYS ILE LEU VAL PHE GLY HIS GLN ASN PRO ASP SER SEQRES 2 A 310 ASP ALA ILE GLY SER SER VAL ALA PHE ALA TYR LEU ALA SEQRES 3 A 310 LYS GLU ALA TRP GLY LEU ASP THR GLU ALA VAL ALA LEU SEQRES 4 A 310 GLY THR PRO ASN GLU GLU THR ALA TYR VAL LEU ASP TYR SEQRES 5 A 310 PHE GLY VAL GLN ALA PRO ARG VAL VAL GLU SER ALA LYS SEQRES 6 A 310 ALA GLU GLY VAL GLU THR VAL ILE LEU THR ASP HIS ASN SEQRES 7 A 310 GLU PHE GLN GLN SER ILE SER ASP ILE LYS ASP VAL THR SEQRES 8 A 310 VAL TYR GLY VAL VAL ASP HIS HIS ARG VAL ALA ASN PHE SEQRES 9 A 310 GLU THR ALA ASN PRO LEU TYR MET ARG LEU GLU PRO VAL SEQRES 10 A 310 GLY SER ALA SER SER ILE VAL TYR ARG MET PHE LYS GLU SEQRES 11 A 310 ASN GLY VAL SER VAL PRO LYS GLU LEU ALA GLY LEU LEU SEQRES 12 A 310 LEU SER GLY LEU ILE SER ASP THR LEU LEU LEU LYS SER SEQRES 13 A 310 PRO THR THR HIS ALA SER ASP ILE PRO VAL ALA LYS GLU SEQRES 14 A 310 LEU ALA GLU LEU ALA GLY VAL ASN LEU GLU GLU TYR GLY SEQRES 15 A 310 LEU GLU MET LEU LYS ALA GLY THR ASN LEU SER SER LYS SEQRES 16 A 310 THR ALA ALA GLU LEU ILE ASP ILE ASP ALA LYS THR PHE SEQRES 17 A 310 GLU LEU ASN GLY GLU ALA VAL ARG VAL ALA GLN VAL ASN SEQRES 18 A 310 THR VAL ASP ILE ASN ASP ILE LEU ALA ARG GLN GLU GLU SEQRES 19 A 310 ILE GLU VAL ALA ILE GLN GLU ALA ILE VAL THR GLU GLY SEQRES 20 A 310 TYR SER ASP PHE VAL LEU MET ILE THR ASP ILE VAL ASN SEQRES 21 A 310 SER ASN SER GLU ILE LEU ALA LEU GLY SER ASN MET ALA SEQRES 22 A 310 LYS VAL GLU ALA ALA PHE GLU PHE THR LEU GLU ASN ASN SEQRES 23 A 310 HIS ALA PHE LEU ALA GLY ALA VAL SER ARG LYS LYS GLN SEQRES 24 A 310 VAL VAL PRO GLN LEU THR GLU SER TYR ASN ALA SEQRES 1 B 310 SER LYS ILE LEU VAL PHE GLY HIS GLN ASN PRO ASP SER SEQRES 2 B 310 ASP ALA ILE GLY SER SER VAL ALA PHE ALA TYR LEU ALA SEQRES 3 B 310 LYS GLU ALA TRP GLY LEU ASP THR GLU ALA VAL ALA LEU SEQRES 4 B 310 GLY THR PRO ASN GLU GLU THR ALA TYR VAL LEU ASP TYR SEQRES 5 B 310 PHE GLY VAL GLN ALA PRO ARG VAL VAL GLU SER ALA LYS SEQRES 6 B 310 ALA GLU GLY VAL GLU THR VAL ILE LEU THR ASP HIS ASN SEQRES 7 B 310 GLU PHE GLN GLN SER ILE SER ASP ILE LYS ASP VAL THR SEQRES 8 B 310 VAL TYR GLY VAL VAL ASP HIS HIS ARG VAL ALA ASN PHE SEQRES 9 B 310 GLU THR ALA ASN PRO LEU TYR MET ARG LEU GLU PRO VAL SEQRES 10 B 310 GLY SER ALA SER SER ILE VAL TYR ARG MET PHE LYS GLU SEQRES 11 B 310 ASN GLY VAL SER VAL PRO LYS GLU LEU ALA GLY LEU LEU SEQRES 12 B 310 LEU SER GLY LEU ILE SER ASP THR LEU LEU LEU LYS SER SEQRES 13 B 310 PRO THR THR HIS ALA SER ASP ILE PRO VAL ALA LYS GLU SEQRES 14 B 310 LEU ALA GLU LEU ALA GLY VAL ASN LEU GLU GLU TYR GLY SEQRES 15 B 310 LEU GLU MET LEU LYS ALA GLY THR ASN LEU SER SER LYS SEQRES 16 B 310 THR ALA ALA GLU LEU ILE ASP ILE ASP ALA LYS THR PHE SEQRES 17 B 310 GLU LEU ASN GLY GLU ALA VAL ARG VAL ALA GLN VAL ASN SEQRES 18 B 310 THR VAL ASP ILE ASN ASP ILE LEU ALA ARG GLN GLU GLU SEQRES 19 B 310 ILE GLU VAL ALA ILE GLN GLU ALA ILE VAL THR GLU GLY SEQRES 20 B 310 TYR SER ASP PHE VAL LEU MET ILE THR ASP ILE VAL ASN SEQRES 21 B 310 SER ASN SER GLU ILE LEU ALA LEU GLY SER ASN MET ALA SEQRES 22 B 310 LYS VAL GLU ALA ALA PHE GLU PHE THR LEU GLU ASN ASN SEQRES 23 B 310 HIS ALA PHE LEU ALA GLY ALA VAL SER ARG LYS LYS GLN SEQRES 24 B 310 VAL VAL PRO GLN LEU THR GLU SER TYR ASN ALA HET MN A 401 1 HET MN A 402 1 HET MG A 501 1 HET 2PN A1001 9 HET TRP A1031 15 HET MN B 403 1 HET MN B 404 1 HET MG B 502 1 HET 2PN B1002 9 HET TRP B2031 15 HETNAM MN MANGANESE (II) ION HETNAM MG MAGNESIUM ION HETNAM 2PN IMIDODIPHOSPHORIC ACID HETNAM TRP TRYPTOPHAN FORMUL 3 MN 4(MN 2+) FORMUL 5 MG 2(MG 2+) FORMUL 6 2PN 2(H5 N O6 P2) FORMUL 7 TRP 2(C11 H12 N2 O2) FORMUL 13 HOH *155(H2 O) HELIX 1 1 ASP A 13 GLY A 32 1 20 HELIX 2 2 ASN A 44 PHE A 54 1 11 HELIX 3 3 SER A 64 GLY A 69 1 6 HELIX 4 4 GLU A 80 SER A 84 5 5 HELIX 5 5 ALA A 121 ASN A 132 1 12 HELIX 6 6 PRO A 137 LEU A 153 1 17 HELIX 7 7 SER A 163 GLY A 176 1 14 HELIX 8 8 ASN A 178 GLY A 190 1 13 HELIX 9 9 THR A 197 ILE A 202 1 6 HELIX 10 10 ASP A 225 ALA A 231 1 7 HELIX 11 11 ARG A 232 GLY A 248 1 17 HELIX 12 12 ASN A 272 GLU A 281 1 10 HELIX 13 13 SER A 296 VAL A 301 1 6 HELIX 14 14 VAL A 301 TYR A 309 1 9 HELIX 15 15 ASP B 13 TRP B 31 1 19 HELIX 16 16 ASN B 44 PHE B 54 1 11 HELIX 17 17 ASP B 87 VAL B 91 5 5 HELIX 18 18 SER B 120 GLY B 133 1 14 HELIX 19 19 PRO B 137 LEU B 153 1 17 HELIX 20 20 SER B 163 GLY B 176 1 14 HELIX 21 21 ASN B 178 LYS B 188 1 11 HELIX 22 22 THR B 197 ASP B 203 1 7 HELIX 23 23 ASP B 225 ALA B 231 1 7 HELIX 24 24 ARG B 232 GLY B 248 1 17 HELIX 25 25 ASN B 272 GLU B 281 1 10 HELIX 26 26 SER B 296 VAL B 301 1 6 HELIX 27 27 VAL B 301 ALA B 311 1 11 SHEET 1 A 5 THR A 35 ALA A 37 0 SHEET 2 A 5 ILE A 4 PHE A 7 1 N ILE A 4 O GLU A 36 SHEET 3 A 5 THR A 72 THR A 76 1 O THR A 76 N PHE A 7 SHEET 4 A 5 THR A 92 ASP A 98 1 O TYR A 94 N VAL A 73 SHEET 5 A 5 TYR A 112 LEU A 115 1 O TYR A 112 N TYR A 94 SHEET 1 B 5 ALA A 206 LEU A 211 0 SHEET 2 B 5 GLU A 214 THR A 223 -1 O VAL A 216 N PHE A 209 SHEET 3 B 5 ASP A 251 ASP A 258 1 O VAL A 253 N ALA A 219 SHEET 4 B 5 ASN A 263 GLY A 270 -1 O ASN A 263 N ASP A 258 SHEET 5 B 5 HIS A 288 ALA A 292 -1 O ALA A 289 N ILE A 266 SHEET 1 C 5 THR B 35 ALA B 37 0 SHEET 2 C 5 ILE B 4 PHE B 7 1 N VAL B 6 O GLU B 36 SHEET 3 C 5 THR B 72 THR B 76 1 O ILE B 74 N LEU B 5 SHEET 4 C 5 THR B 92 ASP B 98 1 O THR B 92 N VAL B 73 SHEET 5 C 5 TYR B 112 LEU B 115 1 O ARG B 114 N VAL B 96 SHEET 1 D 5 ASP B 205 LEU B 211 0 SHEET 2 D 5 GLU B 214 THR B 223 -1 O VAL B 218 N LYS B 207 SHEET 3 D 5 ASP B 251 ASP B 258 1 O THR B 257 N THR B 223 SHEET 4 D 5 ASN B 263 LEU B 269 -1 O LEU B 267 N LEU B 254 SHEET 5 D 5 HIS B 288 LEU B 291 -1 O LEU B 291 N SER B 264 LINK NE2 HIS A 9 MN MN A 401 1555 1555 2.49 LINK OD2 ASP A 13 MN MN A 401 1555 1555 2.47 LINK OD2 ASP A 15 MN MN A 402 1555 1555 2.15 LINK OD1 ASP A 77 MN MN A 401 1555 1555 1.77 LINK OD2 ASP A 77 MN MN A 402 1555 1555 2.28 LINK NE2 HIS A 99 MN MN A 402 1555 1555 2.50 LINK OD2 ASP A 151 MN MN A 402 1555 1555 2.41 LINK MN MN A 401 O5 2PN A1001 1555 1555 2.66 LINK MN MN A 402 O4 2PN A1001 1555 1555 2.04 LINK MG MG A 501 O6 2PN A1001 1555 1555 2.48 LINK MG MG A 501 O3 2PN A1001 1555 1555 2.12 LINK MG MG A 501 O HOH A1099 1555 1555 2.59 LINK NE2 HIS B 9 MN MN B 403 1555 1555 2.63 LINK OD2 ASP B 13 MN MN B 403 1555 1555 1.98 LINK OD2 ASP B 15 MN MN B 404 1555 1555 2.11 LINK OD1 ASP B 77 MN MN B 403 1555 1555 1.97 LINK OD2 ASP B 77 MN MN B 404 1555 1555 2.46 LINK NE2 HIS B 99 MN MN B 404 1555 1555 2.28 LINK OD2 ASP B 151 MN MN B 404 1555 1555 2.06 LINK MN MN B 403 O5 2PN B1002 1555 1555 1.92 LINK MN MN B 404 O4 2PN B1002 1555 1555 2.27 LINK MG MG B 502 O6 2PN B1002 1555 1555 2.35 LINK MG MG B 502 O3 2PN B1002 1555 1555 2.29 SITE 1 AC1 5 HIS A 9 ASP A 13 ASP A 77 MN A 402 SITE 2 AC1 5 2PN A1001 SITE 1 AC2 6 ASP A 15 ASP A 77 HIS A 99 ASP A 151 SITE 2 AC2 6 MN A 401 2PN A1001 SITE 1 AC3 3 ARG A 297 2PN A1001 HOH A1099 SITE 1 AC4 13 HIS A 9 ASP A 77 HIS A 99 HIS A 100 SITE 2 AC4 13 ASP A 151 LYS A 207 ARG A 297 LYS A 298 SITE 3 AC4 13 MN A 401 MN A 402 MG A 501 HOH A1085 SITE 4 AC4 13 HOH A1099 SITE 1 AC5 5 TRP A 31 TYR A 94 GLY A 95 VAL A 97 SITE 2 AC5 5 TYR A 112 SITE 1 AC6 5 HIS B 9 ASP B 13 ASP B 77 MN B 404 SITE 2 AC6 5 2PN B1002 SITE 1 AC7 6 ASP B 15 ASP B 77 HIS B 99 ASP B 151 SITE 2 AC7 6 MN B 403 2PN B1002 SITE 1 AC8 1 2PN B1002 SITE 1 AC9 13 HIS B 9 ASP B 13 ASP B 77 HIS B 99 SITE 2 AC9 13 HIS B 100 ASP B 151 LYS B 207 ARG B 297 SITE 3 AC9 13 LYS B 298 MN B 403 MN B 404 MG B 502 SITE 4 AC9 13 HOH B2097 SITE 1 BC1 5 TRP B 31 TYR B 94 TYR B 112 MET B 128 SITE 2 BC1 5 HOH B2060 CRYST1 181.960 181.960 132.610 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005496 0.003173 0.000000 0.00000 SCALE2 0.000000 0.006346 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007541 0.00000