data_2EQS # _entry.id 2EQS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2EQS pdb_00002eqs 10.2210/pdb2eqs/pdb RCSB RCSB026992 ? ? WWPDB D_1000026992 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hso002001385.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2EQS _pdbx_database_status.recvd_initial_deposition_date 2007-03-30 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Suzuki, S.' 1 'Muto, Y.' 2 'Inoue, M.' 3 'Kigawa, T.' 4 'Terada, T.' 5 'Shirouzu, M.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution structure of the S1 RNA binding domain of human ATP-dependent RNA helicase DHX8' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Suzuki, S.' 1 ? primary 'Muto, Y.' 2 ? primary 'Inoue, M.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Terada, T.' 5 ? primary 'Shirouzu, M.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'ATP-dependent RNA helicase DHX8' _entity.formula_weight 11368.854 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 3.6.1.- _entity.pdbx_mutation ? _entity.pdbx_fragment 'S1 domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'DEAH box protein 8, RNA helicase HRH1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTGTKTS LSMKDVDQETGEDLNPNRRRNLV ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTGTKTS LSMKDVDQETGEDLNPNRRRNLV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hso002001385.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 GLU n 1 9 GLU n 1 10 PRO n 1 11 THR n 1 12 ILE n 1 13 GLY n 1 14 ASP n 1 15 ILE n 1 16 TYR n 1 17 ASN n 1 18 GLY n 1 19 LYS n 1 20 VAL n 1 21 THR n 1 22 SER n 1 23 ILE n 1 24 MET n 1 25 GLN n 1 26 PHE n 1 27 GLY n 1 28 CYS n 1 29 PHE n 1 30 VAL n 1 31 GLN n 1 32 LEU n 1 33 GLU n 1 34 GLY n 1 35 LEU n 1 36 ARG n 1 37 LYS n 1 38 ARG n 1 39 TRP n 1 40 GLU n 1 41 GLY n 1 42 LEU n 1 43 VAL n 1 44 HIS n 1 45 ILE n 1 46 SER n 1 47 GLU n 1 48 LEU n 1 49 ARG n 1 50 ARG n 1 51 GLU n 1 52 GLY n 1 53 ARG n 1 54 VAL n 1 55 ALA n 1 56 ASN n 1 57 VAL n 1 58 ALA n 1 59 ASP n 1 60 VAL n 1 61 VAL n 1 62 SER n 1 63 LYS n 1 64 GLY n 1 65 GLN n 1 66 ARG n 1 67 VAL n 1 68 LYS n 1 69 VAL n 1 70 LYS n 1 71 VAL n 1 72 LEU n 1 73 SER n 1 74 PHE n 1 75 THR n 1 76 GLY n 1 77 THR n 1 78 LYS n 1 79 THR n 1 80 SER n 1 81 LEU n 1 82 SER n 1 83 MET n 1 84 LYS n 1 85 ASP n 1 86 VAL n 1 87 ASP n 1 88 GLN n 1 89 GLU n 1 90 THR n 1 91 GLY n 1 92 GLU n 1 93 ASP n 1 94 LEU n 1 95 ASN n 1 96 PRO n 1 97 ASN n 1 98 ARG n 1 99 ARG n 1 100 ARG n 1 101 ASN n 1 102 LEU n 1 103 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene DHX8 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P060919-24 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DHX8_HUMAN _struct_ref.pdbx_db_accession Q14562 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTGTKTSLSMKDVD QETGEDLNPNRRRNLV ; _struct_ref.pdbx_align_begin 260 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2EQS _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 103 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q14562 _struct_ref_seq.db_align_beg 260 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 355 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 260 _struct_ref_seq.pdbx_auth_seq_align_end 355 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2EQS GLY A 1 ? UNP Q14562 ? ? 'expression tag' 253 1 1 2EQS SER A 2 ? UNP Q14562 ? ? 'expression tag' 254 2 1 2EQS SER A 3 ? UNP Q14562 ? ? 'expression tag' 255 3 1 2EQS GLY A 4 ? UNP Q14562 ? ? 'expression tag' 256 4 1 2EQS SER A 5 ? UNP Q14562 ? ? 'expression tag' 257 5 1 2EQS SER A 6 ? UNP Q14562 ? ? 'expression tag' 258 6 1 2EQS GLY A 7 ? UNP Q14562 ? ? 'expression tag' 259 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.7mM 13C/15N-protein; 20mM d-Tris-HCl(pH7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2EQS _pdbx_nmr_refine.method 'torsion angle dyanamics, simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 2EQS _pdbx_nmr_details.text 'The structure was determined using triple-resonance NMR spectroscopy.' # _pdbx_nmr_ensemble.entry_id 2EQS _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, structures with the lowest energy, target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2EQS _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20060702 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9825 'Kobayashi, N.' 4 'data analysis' Olivia 1.10.5 'Yokochi, M.' 5 'structure solution' CYANA 2.0.17 'Guntert, P.' 6 refinement CYANA 2.0.17 'Guntert, P.' 7 # _exptl.entry_id 2EQS _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2EQS _struct.title 'Solution structure of the S1 RNA binding domain of human ATP-dependent RNA helicase DHX8' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2EQS _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;S1 domain, OB-fold, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, HYDROLASE ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 44 ? LEU A 48 ? HIS A 296 LEU A 300 5 ? 5 HELX_P HELX_P2 2 ASN A 56 ? VAL A 61 ? ASN A 308 VAL A 313 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 15 ? ILE A 23 ? ILE A 267 ILE A 275 A 2 CYS A 28 ? LEU A 32 ? CYS A 280 LEU A 284 A 3 GLU A 40 ? VAL A 43 ? GLU A 292 VAL A 295 A 4 LYS A 78 ? SER A 82 ? LYS A 330 SER A 334 A 5 ARG A 66 ? THR A 75 ? ARG A 318 THR A 327 A 6 ILE A 15 ? ILE A 23 ? ILE A 267 ILE A 275 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 19 ? N LYS A 271 O GLN A 31 ? O GLN A 283 A 2 3 N CYS A 28 ? N CYS A 280 O VAL A 43 ? O VAL A 295 A 3 4 N LEU A 42 ? N LEU A 294 O LEU A 81 ? O LEU A 333 A 4 5 O LYS A 78 ? O LYS A 330 N THR A 75 ? N THR A 327 A 5 6 O VAL A 67 ? O VAL A 319 N GLY A 18 ? N GLY A 270 # _database_PDB_matrix.entry_id 2EQS _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2EQS _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 253 253 GLY GLY A . n A 1 2 SER 2 254 254 SER SER A . n A 1 3 SER 3 255 255 SER SER A . n A 1 4 GLY 4 256 256 GLY GLY A . n A 1 5 SER 5 257 257 SER SER A . n A 1 6 SER 6 258 258 SER SER A . n A 1 7 GLY 7 259 259 GLY GLY A . n A 1 8 GLU 8 260 260 GLU GLU A . n A 1 9 GLU 9 261 261 GLU GLU A . n A 1 10 PRO 10 262 262 PRO PRO A . n A 1 11 THR 11 263 263 THR THR A . n A 1 12 ILE 12 264 264 ILE ILE A . n A 1 13 GLY 13 265 265 GLY GLY A . n A 1 14 ASP 14 266 266 ASP ASP A . n A 1 15 ILE 15 267 267 ILE ILE A . n A 1 16 TYR 16 268 268 TYR TYR A . n A 1 17 ASN 17 269 269 ASN ASN A . n A 1 18 GLY 18 270 270 GLY GLY A . n A 1 19 LYS 19 271 271 LYS LYS A . n A 1 20 VAL 20 272 272 VAL VAL A . n A 1 21 THR 21 273 273 THR THR A . n A 1 22 SER 22 274 274 SER SER A . n A 1 23 ILE 23 275 275 ILE ILE A . n A 1 24 MET 24 276 276 MET MET A . n A 1 25 GLN 25 277 277 GLN GLN A . n A 1 26 PHE 26 278 278 PHE PHE A . n A 1 27 GLY 27 279 279 GLY GLY A . n A 1 28 CYS 28 280 280 CYS CYS A . n A 1 29 PHE 29 281 281 PHE PHE A . n A 1 30 VAL 30 282 282 VAL VAL A . n A 1 31 GLN 31 283 283 GLN GLN A . n A 1 32 LEU 32 284 284 LEU LEU A . n A 1 33 GLU 33 285 285 GLU GLU A . n A 1 34 GLY 34 286 286 GLY GLY A . n A 1 35 LEU 35 287 287 LEU LEU A . n A 1 36 ARG 36 288 288 ARG ARG A . n A 1 37 LYS 37 289 289 LYS LYS A . n A 1 38 ARG 38 290 290 ARG ARG A . n A 1 39 TRP 39 291 291 TRP TRP A . n A 1 40 GLU 40 292 292 GLU GLU A . n A 1 41 GLY 41 293 293 GLY GLY A . n A 1 42 LEU 42 294 294 LEU LEU A . n A 1 43 VAL 43 295 295 VAL VAL A . n A 1 44 HIS 44 296 296 HIS HIS A . n A 1 45 ILE 45 297 297 ILE ILE A . n A 1 46 SER 46 298 298 SER SER A . n A 1 47 GLU 47 299 299 GLU GLU A . n A 1 48 LEU 48 300 300 LEU LEU A . n A 1 49 ARG 49 301 301 ARG ARG A . n A 1 50 ARG 50 302 302 ARG ARG A . n A 1 51 GLU 51 303 303 GLU GLU A . n A 1 52 GLY 52 304 304 GLY GLY A . n A 1 53 ARG 53 305 305 ARG ARG A . n A 1 54 VAL 54 306 306 VAL VAL A . n A 1 55 ALA 55 307 307 ALA ALA A . n A 1 56 ASN 56 308 308 ASN ASN A . n A 1 57 VAL 57 309 309 VAL VAL A . n A 1 58 ALA 58 310 310 ALA ALA A . n A 1 59 ASP 59 311 311 ASP ASP A . n A 1 60 VAL 60 312 312 VAL VAL A . n A 1 61 VAL 61 313 313 VAL VAL A . n A 1 62 SER 62 314 314 SER SER A . n A 1 63 LYS 63 315 315 LYS LYS A . n A 1 64 GLY 64 316 316 GLY GLY A . n A 1 65 GLN 65 317 317 GLN GLN A . n A 1 66 ARG 66 318 318 ARG ARG A . n A 1 67 VAL 67 319 319 VAL VAL A . n A 1 68 LYS 68 320 320 LYS LYS A . n A 1 69 VAL 69 321 321 VAL VAL A . n A 1 70 LYS 70 322 322 LYS LYS A . n A 1 71 VAL 71 323 323 VAL VAL A . n A 1 72 LEU 72 324 324 LEU LEU A . n A 1 73 SER 73 325 325 SER SER A . n A 1 74 PHE 74 326 326 PHE PHE A . n A 1 75 THR 75 327 327 THR THR A . n A 1 76 GLY 76 328 328 GLY GLY A . n A 1 77 THR 77 329 329 THR THR A . n A 1 78 LYS 78 330 330 LYS LYS A . n A 1 79 THR 79 331 331 THR THR A . n A 1 80 SER 80 332 332 SER SER A . n A 1 81 LEU 81 333 333 LEU LEU A . n A 1 82 SER 82 334 334 SER SER A . n A 1 83 MET 83 335 335 MET MET A . n A 1 84 LYS 84 336 336 LYS LYS A . n A 1 85 ASP 85 337 337 ASP ASP A . n A 1 86 VAL 86 338 338 VAL VAL A . n A 1 87 ASP 87 339 339 ASP ASP A . n A 1 88 GLN 88 340 340 GLN GLN A . n A 1 89 GLU 89 341 341 GLU GLU A . n A 1 90 THR 90 342 342 THR THR A . n A 1 91 GLY 91 343 343 GLY GLY A . n A 1 92 GLU 92 344 344 GLU GLU A . n A 1 93 ASP 93 345 345 ASP ASP A . n A 1 94 LEU 94 346 346 LEU LEU A . n A 1 95 ASN 95 347 347 ASN ASN A . n A 1 96 PRO 96 348 348 PRO PRO A . n A 1 97 ASN 97 349 349 ASN ASN A . n A 1 98 ARG 98 350 350 ARG ARG A . n A 1 99 ARG 99 351 351 ARG ARG A . n A 1 100 ARG 100 352 352 ARG ARG A . n A 1 101 ASN 101 353 353 ASN ASN A . n A 1 102 LEU 102 354 354 LEU LEU A . n A 1 103 VAL 103 355 355 VAL VAL A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-02 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_nmr_spectrometer 4 3 'Structure model' pdbx_struct_assembly 5 3 'Structure model' pdbx_struct_oper_list 6 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' 5 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 278 ? ? -96.34 -61.75 2 1 GLU A 299 ? ? -105.36 42.02 3 1 LEU A 300 ? ? -130.61 -50.10 4 1 GLU A 303 ? ? -38.64 95.30 5 1 ALA A 307 ? ? -73.47 -70.76 6 1 THR A 329 ? ? -98.89 38.00 7 1 GLN A 340 ? ? -83.48 39.92 8 1 GLU A 341 ? ? -131.97 -60.74 9 1 LEU A 346 ? ? -90.29 32.57 10 1 ARG A 352 ? ? -46.68 164.26 11 2 SER A 255 ? ? -132.78 -52.03 12 2 PHE A 278 ? ? -105.56 -63.47 13 2 LEU A 287 ? ? -35.39 145.84 14 2 GLU A 299 ? ? -103.61 51.78 15 2 LEU A 300 ? ? -130.77 -67.15 16 2 GLU A 303 ? ? -44.56 100.40 17 2 ARG A 305 ? ? -119.70 69.37 18 2 ALA A 307 ? ? -121.24 -57.13 19 2 THR A 329 ? ? -101.64 42.86 20 2 ASP A 337 ? ? -34.45 -37.98 21 2 GLN A 340 ? ? -85.33 33.00 22 2 LEU A 346 ? ? -88.64 39.81 23 2 ASN A 347 ? ? -107.93 76.85 24 2 ASN A 349 ? ? -130.15 -35.99 25 2 ARG A 350 ? ? -34.53 106.49 26 3 GLU A 299 ? ? -85.92 46.29 27 3 LEU A 300 ? ? -134.21 -68.23 28 3 LEU A 346 ? ? -92.74 40.07 29 3 PRO A 348 ? ? -69.74 0.23 30 3 ASN A 349 ? ? -105.56 63.43 31 3 ARG A 351 ? ? -107.49 -61.47 32 4 HIS A 296 ? ? -49.50 167.25 33 4 LEU A 300 ? ? -128.15 -63.40 34 4 ALA A 307 ? ? -100.28 -66.36 35 4 THR A 329 ? ? -83.38 43.25 36 4 GLN A 340 ? ? -84.49 43.81 37 4 GLU A 341 ? ? -129.00 -57.47 38 4 LEU A 346 ? ? -94.57 34.49 39 4 ASN A 349 ? ? -170.06 120.40 40 4 ARG A 351 ? ? -97.77 -66.29 41 4 ASN A 353 ? ? -54.32 83.95 42 5 ARG A 290 ? ? -43.69 102.12 43 5 GLU A 299 ? ? -109.48 44.34 44 5 LEU A 300 ? ? -131.78 -56.15 45 5 ARG A 302 ? ? -102.87 -68.24 46 5 ARG A 305 ? ? -68.25 92.10 47 5 VAL A 306 ? ? -43.84 150.54 48 5 ALA A 307 ? ? -99.83 -74.89 49 6 LEU A 287 ? ? -36.46 131.38 50 6 HIS A 296 ? ? -45.61 168.61 51 6 GLU A 299 ? ? -87.06 44.07 52 6 LEU A 300 ? ? -133.70 -64.75 53 6 GLN A 340 ? ? -80.96 42.89 54 6 GLU A 341 ? ? -133.19 -43.08 55 6 THR A 342 ? ? -130.38 -42.77 56 6 LEU A 346 ? ? -88.22 39.30 57 7 SER A 255 ? ? -123.72 -59.56 58 7 ARG A 302 ? ? -121.16 -52.59 59 7 GLU A 303 ? ? -84.51 -75.01 60 7 THR A 329 ? ? -102.31 41.50 61 7 ARG A 350 ? ? -107.83 -60.56 62 8 SER A 255 ? ? -52.51 98.39 63 8 ARG A 290 ? ? -63.87 97.47 64 8 GLU A 299 ? ? -98.02 46.72 65 8 LEU A 300 ? ? -133.71 -59.13 66 8 ALA A 307 ? ? -90.39 -68.53 67 8 THR A 342 ? ? -133.30 -35.75 68 8 PRO A 348 ? ? -69.78 1.28 69 9 ARG A 305 ? ? -55.30 104.42 70 9 THR A 329 ? ? -84.43 34.39 71 9 THR A 342 ? ? -131.79 -31.57 72 9 ASP A 345 ? ? -38.45 118.01 73 9 LEU A 354 ? ? -171.34 131.45 74 10 SER A 254 ? ? -48.16 103.69 75 10 SER A 255 ? ? -109.91 41.13 76 10 HIS A 296 ? ? -49.85 165.89 77 10 ARG A 305 ? ? -171.06 127.05 78 10 LEU A 346 ? ? -93.50 36.45 79 10 ARG A 350 ? ? -93.48 -61.91 80 10 ARG A 351 ? ? -34.50 99.68 81 11 PRO A 262 ? ? -69.73 -168.27 82 11 GLU A 299 ? ? -87.67 41.07 83 11 LEU A 300 ? ? -134.49 -65.21 84 11 GLU A 303 ? ? -44.31 169.41 85 11 THR A 329 ? ? -97.88 41.12 86 11 THR A 342 ? ? -133.26 -35.93 87 11 ASN A 347 ? ? -29.34 93.34 88 12 SER A 255 ? ? -63.67 99.87 89 12 GLU A 299 ? ? -81.07 43.33 90 12 LEU A 300 ? ? -134.99 -40.76 91 12 ALA A 307 ? ? -46.15 -70.29 92 12 ASP A 311 ? ? -83.95 32.81 93 12 VAL A 312 ? ? -133.14 -47.86 94 12 GLN A 340 ? ? -83.34 36.98 95 12 THR A 342 ? ? -134.46 -41.66 96 12 ARG A 352 ? ? -42.51 155.86 97 13 SER A 258 ? ? -124.08 -60.25 98 13 GLU A 299 ? ? -89.99 40.41 99 13 LEU A 300 ? ? -132.17 -34.04 100 13 VAL A 309 ? ? -134.69 -36.29 101 13 THR A 329 ? ? -94.82 38.98 102 13 GLN A 340 ? ? -81.41 42.63 103 13 GLU A 341 ? ? -131.06 -51.73 104 14 ALA A 307 ? ? -62.39 -72.28 105 14 THR A 329 ? ? -97.02 39.19 106 14 ASP A 337 ? ? -80.42 42.61 107 14 VAL A 338 ? ? -161.10 112.57 108 14 ASN A 347 ? ? -29.16 93.26 109 14 ARG A 351 ? ? -37.35 145.30 110 15 SER A 254 ? ? 39.44 45.15 111 15 GLU A 299 ? ? -90.64 43.89 112 15 ARG A 301 ? ? -160.41 113.06 113 15 ALA A 307 ? ? -133.98 -52.62 114 15 ASN A 347 ? ? -114.26 64.28 115 15 ARG A 350 ? ? -98.61 49.03 116 15 ARG A 352 ? ? -125.14 -50.09 117 16 SER A 257 ? ? 71.14 47.26 118 16 LEU A 287 ? ? -52.37 175.54 119 16 ARG A 290 ? ? -51.49 108.33 120 16 GLU A 299 ? ? -98.01 47.45 121 16 LEU A 300 ? ? -133.34 -57.70 122 16 ARG A 302 ? ? -99.11 -64.73 123 16 LYS A 336 ? ? -60.19 -70.37 124 16 ASP A 337 ? ? -38.76 -26.64 125 16 THR A 342 ? ? -130.03 -45.98 126 17 LEU A 287 ? ? -51.28 -179.86 127 17 LEU A 300 ? ? -127.25 -53.69 128 17 ARG A 302 ? ? -43.56 165.78 129 17 GLU A 303 ? ? -41.58 103.08 130 17 THR A 329 ? ? -95.46 45.49 131 17 THR A 342 ? ? -131.57 -35.71 132 17 ARG A 350 ? ? -101.52 43.63 133 18 SER A 254 ? ? -83.34 44.76 134 18 SER A 255 ? ? -108.72 41.98 135 18 ARG A 290 ? ? -55.07 96.81 136 18 GLU A 299 ? ? -98.95 39.98 137 18 LEU A 300 ? ? -131.24 -46.25 138 18 ARG A 302 ? ? -84.90 -72.92 139 18 ALA A 307 ? ? -86.90 -72.82 140 18 VAL A 312 ? ? -130.09 -46.08 141 18 ASP A 339 ? ? -48.13 162.66 142 18 LEU A 354 ? ? -82.77 41.57 143 19 ARG A 290 ? ? -69.50 96.74 144 19 SER A 325 ? ? -173.73 142.98 145 19 ASP A 339 ? ? -46.31 158.15 146 19 THR A 342 ? ? -133.27 -34.52 147 19 LEU A 346 ? ? -96.60 32.71 148 20 SER A 257 ? ? -120.28 -57.91 149 20 GLU A 260 ? ? -121.46 -52.40 150 20 PRO A 262 ? ? -69.75 -174.94 151 20 ARG A 290 ? ? -54.20 107.15 152 20 LEU A 300 ? ? -122.29 -55.05 153 20 ARG A 302 ? ? -45.87 166.56 154 20 ARG A 305 ? ? -172.97 120.79 155 20 ALA A 307 ? ? -57.88 -74.30 156 20 VAL A 312 ? ? -124.47 -55.31 157 20 GLN A 340 ? ? -88.86 30.82 158 20 GLU A 341 ? ? -121.14 -57.64 #