data_2EXU # _entry.id 2EXU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.284 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2EXU RCSB RCSB035225 WWPDB D_1000035225 # _pdbx_database_status.entry_id 2EXU _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2005-11-08 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Xu, F.' 1 'Guo, M.' 2 'Fang, P.' 3 'Teng, M.' 4 'Niu, L.' 5 # _citation.id primary _citation.title 'Crystal Structure of Saccharomyces cerevisiae transcription elongation factors Spt4-Spt5NGN domain' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Xu, F.' 1 primary 'Guo, M.' 2 primary 'Fang, P.' 3 primary 'Teng, M.' 4 primary 'Niu, L.' 5 # _cell.length_a 53.801 _cell.length_b 53.801 _cell.length_c 177.120 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.entry_id 2EXU _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 41 2 2' _symmetry.entry_id 2EXU _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 91 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transcription initiation protein SPT4/SPT5' 22624.502 1 ? ? 'Spt4, Spt5 NGN domain' ? 2 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 3 non-polymer syn ETHANOL 46.068 2 ? ? ? ? 4 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 1 ? ? ? ? 5 water nat water 18.015 110 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MSSERACMLCGIVQTTNEFNRDGCPNCQGIFEEAGVSTMECTSPSFEGLVGMCKPTKSWVAKWLSVDHSIAGMYAIKVDG RLPAEVVELLPHYKPRDGSGSATIWGVRCRPGKEKELIRKLLKKKFNLDRAMGKKKLKILSIFQRDNYTGRIYIEAPKQS VIEKFCNGVPDIYISQKLLIPVQELPLLLKPNLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MSSERACMLCGIVQTTNEFNRDGCPNCQGIFEEAGVSTMECTSPSFEGLVGMCKPTKSWVAKWLSVDHSIAGMYAIKVDG RLPAEVVELLPHYKPRDGSGSATIWGVRCRPGKEKELIRKLLKKKFNLDRAMGKKKLKILSIFQRDNYTGRIYIEAPKQS VIEKFCNGVPDIYISQKLLIPVQELPLLLKPNLEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 SER n 1 4 GLU n 1 5 ARG n 1 6 ALA n 1 7 CYS n 1 8 MET n 1 9 LEU n 1 10 CYS n 1 11 GLY n 1 12 ILE n 1 13 VAL n 1 14 GLN n 1 15 THR n 1 16 THR n 1 17 ASN n 1 18 GLU n 1 19 PHE n 1 20 ASN n 1 21 ARG n 1 22 ASP n 1 23 GLY n 1 24 CYS n 1 25 PRO n 1 26 ASN n 1 27 CYS n 1 28 GLN n 1 29 GLY n 1 30 ILE n 1 31 PHE n 1 32 GLU n 1 33 GLU n 1 34 ALA n 1 35 GLY n 1 36 VAL n 1 37 SER n 1 38 THR n 1 39 MET n 1 40 GLU n 1 41 CYS n 1 42 THR n 1 43 SER n 1 44 PRO n 1 45 SER n 1 46 PHE n 1 47 GLU n 1 48 GLY n 1 49 LEU n 1 50 VAL n 1 51 GLY n 1 52 MET n 1 53 CYS n 1 54 LYS n 1 55 PRO n 1 56 THR n 1 57 LYS n 1 58 SER n 1 59 TRP n 1 60 VAL n 1 61 ALA n 1 62 LYS n 1 63 TRP n 1 64 LEU n 1 65 SER n 1 66 VAL n 1 67 ASP n 1 68 HIS n 1 69 SER n 1 70 ILE n 1 71 ALA n 1 72 GLY n 1 73 MET n 1 74 TYR n 1 75 ALA n 1 76 ILE n 1 77 LYS n 1 78 VAL n 1 79 ASP n 1 80 GLY n 1 81 ARG n 1 82 LEU n 1 83 PRO n 1 84 ALA n 1 85 GLU n 1 86 VAL n 1 87 VAL n 1 88 GLU n 1 89 LEU n 1 90 LEU n 1 91 PRO n 1 92 HIS n 1 93 TYR n 1 94 LYS n 1 95 PRO n 1 96 ARG n 1 97 ASP n 1 98 GLY n 1 99 SER n 1 100 GLY n 1 101 SER n 1 102 ALA n 1 103 THR n 1 104 ILE n 1 105 TRP n 1 106 GLY n 1 107 VAL n 1 108 ARG n 1 109 CYS n 1 110 ARG n 1 111 PRO n 1 112 GLY n 1 113 LYS n 1 114 GLU n 1 115 LYS n 1 116 GLU n 1 117 LEU n 1 118 ILE n 1 119 ARG n 1 120 LYS n 1 121 LEU n 1 122 LEU n 1 123 LYS n 1 124 LYS n 1 125 LYS n 1 126 PHE n 1 127 ASN n 1 128 LEU n 1 129 ASP n 1 130 ARG n 1 131 ALA n 1 132 MET n 1 133 GLY n 1 134 LYS n 1 135 LYS n 1 136 LYS n 1 137 LEU n 1 138 LYS n 1 139 ILE n 1 140 LEU n 1 141 SER n 1 142 ILE n 1 143 PHE n 1 144 GLN n 1 145 ARG n 1 146 ASP n 1 147 ASN n 1 148 TYR n 1 149 THR n 1 150 GLY n 1 151 ARG n 1 152 ILE n 1 153 TYR n 1 154 ILE n 1 155 GLU n 1 156 ALA n 1 157 PRO n 1 158 LYS n 1 159 GLN n 1 160 SER n 1 161 VAL n 1 162 ILE n 1 163 GLU n 1 164 LYS n 1 165 PHE n 1 166 CYS n 1 167 ASN n 1 168 GLY n 1 169 VAL n 1 170 PRO n 1 171 ASP n 1 172 ILE n 1 173 TYR n 1 174 ILE n 1 175 SER n 1 176 GLN n 1 177 LYS n 1 178 LEU n 1 179 LEU n 1 180 ILE n 1 181 PRO n 1 182 VAL n 1 183 GLN n 1 184 GLU n 1 185 LEU n 1 186 PRO n 1 187 LEU n 1 188 LEU n 1 189 LEU n 1 190 LYS n 1 191 PRO n 1 192 ASN n 1 193 LEU n 1 194 GLU n 1 195 HIS n 1 196 HIS n 1 197 HIS n 1 198 HIS n 1 199 HIS n 1 200 HIS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? 1 99 ;baker's yeast ; Saccharomyces 'SPT4, SPT5' ? ? ? ? ? ? 'Saccharomyces cerevisiae' 4932 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? 'Rosetta DE3' ? ? ? ? ? ? ? PLASMID ? ? ? pET22b ? ? 1 2 sample ? 102 192 ;baker's yeast ; Saccharomyces 'SPT4, SPT5' ? ? ? ? ? ? 'Saccharomyces cerevisiae' 4932 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? 'Rosetta DE3' ? ? ? ? ? ? ? PLASMID ? ? ? pET22b ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP SPT4_YEAST P32914 1 ;MSSERACMLCGIVQTTNEFNRDGCPNCQGIFEEAGVSTMECTSPSFEGLVGMCKPTKSWVAKWLSVDHSIAGMYAIKVDG RLPAEVVELLPHYKPRDGS ; 1 ? 2 UNP SPT5_YEAST P27692 1 ;ATIWGVRCRPGKEKELIRKLLKKKFNLDRAMGKKKLKILSIFQRDNYTGRIYIEAPKQSVIEKFCNGVPDIYISQKLLIP VQELPLLLKPN ; 285 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2EXU A 1 ? 99 ? P32914 1 ? 99 ? 1 99 2 2 2EXU A 102 ? 192 ? P27692 285 ? 375 ? 285 375 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2EXU GLY A 100 ? UNP P32914 ? ? LINKER 100 1 1 2EXU SER A 101 ? UNP P32914 ? ? LINKER 101 2 1 2EXU LEU A 193 ? UNP P27692 ? ? 'EXPRESSION TAG' 376 3 1 2EXU GLU A 194 ? UNP P27692 ? ? 'EXPRESSION TAG' 377 4 1 2EXU HIS A 195 ? UNP P27692 ? ? 'EXPRESSION TAG' 378 5 1 2EXU HIS A 196 ? UNP P27692 ? ? 'EXPRESSION TAG' 379 6 1 2EXU HIS A 197 ? UNP P27692 ? ? 'EXPRESSION TAG' 380 7 1 2EXU HIS A 198 ? UNP P27692 ? ? 'EXPRESSION TAG' 381 8 1 2EXU HIS A 199 ? UNP P27692 ? ? 'EXPRESSION TAG' 382 9 1 2EXU HIS A 200 ? UNP P27692 ? ? 'EXPRESSION TAG' 383 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EOH non-polymer . ETHANOL ? 'C2 H6 O' 46.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 2EXU _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.83 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 56.55 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 8.8 _exptl_crystal_grow.temp 293.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '30% EtOH, 50mM NaCl, 100mM Tris-HCl, pH 8.8, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 1,2 ? ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD MARRESEARCH 2005-05-03 ? 2 CCD MARRESEARCH 2005-04-26 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.monochromator _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.pdbx_scattering_type 1 1 'SINGLE WAVELENGTH' GRAPHITE M x-ray 2 1 'SINGLE WAVELENGTH' GRAPHITE M x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.2834 1.0 2 1.5418 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline 1 SYNCHROTRON 'BSRF BEAMLINE 3W1A' ? 1.2834 BSRF 3W1A 2 'ROTATING ANODE' RIGAKU ? 1.5418 ? ? # _reflns.entry_id 2EXU _reflns.d_resolution_low 53.84 _reflns.d_resolution_high 2.22 _reflns.number_obs 13576 _reflns.percent_possible_obs 99.700 _reflns.pdbx_Rmerge_I_obs 0.088 _reflns.pdbx_chi_squared ? _reflns.pdbx_redundancy 7.700 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_netI_over_sigmaI 5.400 _reflns.pdbx_Rsym_value 0.088 _reflns.observed_criterion_sigma_F 2.0 _reflns.observed_criterion_sigma_I 2.0 _reflns.number_all 13617 _reflns.B_iso_Wilson_estimate 43.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # _reflns_shell.d_res_low 2.33 _reflns_shell.d_res_high 2.23 _reflns_shell.number_measured_obs 1627 _reflns_shell.percent_possible_obs 97.600 _reflns_shell.Rmerge_I_obs 0.262 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_redundancy 7.600 _reflns_shell.number_unique_obs ? _reflns_shell.meanI_over_sigI_obs 2.800 _reflns_shell.pdbx_Rsym_value 0.262 _reflns_shell.percent_possible_all 99.7 _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1,2 # _refine.ls_d_res_high 2.230 _refine.ls_d_res_low 21.420 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 100.000 _refine.ls_number_reflns_obs 13499 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.ls_R_factor_all 0.207 _refine.ls_R_factor_R_work 0.206 _refine.ls_R_factor_R_free 0.221 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 686 _refine.B_iso_mean 37.784 _refine.aniso_B[1][1] 0.750 _refine.aniso_B[2][2] 0.750 _refine.aniso_B[3][3] -1.510 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.940 _refine.correlation_coeff_Fo_to_Fc_free 0.943 _refine.pdbx_overall_ESU_R 0.237 _refine.pdbx_overall_ESU_R_Free 0.178 _refine.overall_SU_ML 0.130 _refine.overall_SU_B 10.729 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.entry_id 2EXU _refine.pdbx_ls_sigma_I 2.0 _refine.ls_number_reflns_all 13617 _refine.ls_R_factor_obs 0.207 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1503 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.number_atoms_solvent 110 _refine_hist.number_atoms_total 1628 _refine_hist.d_res_high 2.230 _refine_hist.d_res_low 21.420 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1543 0.007 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2074 0.994 1.996 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 190 4.917 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 59 33.726 23.898 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 294 14.311 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 10 15.066 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 230 0.064 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1114 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 711 0.181 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1056 0.297 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 117 0.138 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 78 0.163 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 26 0.137 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 988 0.249 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1546 0.425 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 630 0.723 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 528 1.168 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.225 _refine_ls_shell.d_res_low 2.344 _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.percent_reflns_obs 100.000 _refine_ls_shell.number_reflns_R_work 1769 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.217 _refine_ls_shell.R_factor_R_free 0.259 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 95 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1864 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2EXU _struct.title 'Crystal Structure of Saccharomyces cerevisiae transcription elongation factors Spt4-Spt5NGN domain' _struct.pdbx_descriptor 'Transcription initiation protein SPT4, SPT5' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2EXU _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'helixs surrounding beta sheet, Transcription' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 5 ? # _struct_biol.id 1 _struct_biol.details ;The biological assembly is a heterodimer containing a Spt4(Entity 1) and a Spt5 NGN domain (Entity 2) generated by the operation: y, x, -z ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 16 ? GLY A 23 ? THR A 16 GLY A 23 1 ? 8 HELX_P HELX_P2 2 CYS A 27 ? GLY A 35 ? CYS A 27 GLY A 35 1 ? 9 HELX_P HELX_P3 3 THR A 38 ? GLU A 40 ? THR A 38 GLU A 40 5 ? 3 HELX_P HELX_P4 4 SER A 58 ? LEU A 64 ? SER A 58 LEU A 64 1 ? 7 HELX_P HELX_P5 5 PRO A 83 ? GLU A 88 ? PRO A 83 GLU A 88 1 ? 6 HELX_P HELX_P6 6 LYS A 113 ? MET A 132 ? LYS A 296 MET A 315 1 ? 20 HELX_P HELX_P7 7 LYS A 158 ? ASN A 167 ? LYS A 341 ASN A 350 1 ? 10 HELX_P HELX_P8 8 PRO A 181 ? GLN A 183 ? PRO A 364 GLN A 366 5 ? 3 HELX_P HELX_P9 9 GLU A 184 ? LYS A 190 ? GLU A 367 LYS A 373 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A SER 101 C ? ? ? 1_555 A ALA 102 N ? ? A SER 101 A ALA 285 1_555 ? ? ? ? ? ? ? 1.488 ? metalc1 metalc ? ? B ZN . ZN ? ? ? 1_555 A CYS 7 SG ? ? A ZN 501 A CYS 7 1_555 ? ? ? ? ? ? ? 2.316 ? metalc2 metalc ? ? B ZN . ZN ? ? ? 1_555 A CYS 10 SG ? ? A ZN 501 A CYS 10 1_555 ? ? ? ? ? ? ? 2.372 ? metalc3 metalc ? ? B ZN . ZN ? ? ? 1_555 A CYS 27 SG ? ? A ZN 501 A CYS 27 1_555 ? ? ? ? ? ? ? 2.298 ? metalc4 metalc ? ? B ZN . ZN ? ? ? 1_555 A CYS 24 SG ? ? A ZN 501 A CYS 24 1_555 ? ? ? ? ? ? ? 2.355 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 2 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 13 ? THR A 15 ? VAL A 13 THR A 15 A 2 GLU A 4 ? CYS A 7 ? GLU A 4 CYS A 7 A 3 THR A 42 ? SER A 43 ? THR A 42 SER A 43 B 1 PHE A 46 ? MET A 52 ? PHE A 46 MET A 52 B 2 GLY A 72 ? VAL A 78 ? GLY A 72 VAL A 78 C 1 SER A 141 ? PHE A 143 ? SER A 324 PHE A 326 C 2 ARG A 151 ? GLU A 155 ? ARG A 334 GLU A 338 C 3 ILE A 104 ? CYS A 109 ? ILE A 287 CYS A 292 C 4 ILE A 172 ? LEU A 179 ? ILE A 355 LEU A 362 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLN A 14 ? O GLN A 14 N ARG A 5 ? N ARG A 5 A 2 3 N ALA A 6 ? N ALA A 6 O SER A 43 ? O SER A 43 B 1 2 N VAL A 50 ? N VAL A 50 O TYR A 74 ? O TYR A 74 C 1 2 N SER A 141 ? N SER A 324 O GLU A 155 ? O GLU A 338 C 2 3 O ILE A 152 ? O ILE A 335 N VAL A 107 ? N VAL A 290 C 3 4 N GLY A 106 ? N GLY A 289 O LEU A 178 ? O LEU A 361 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 501' AC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE EOH A 1001' AC3 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE EOH A 1002' AC4 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE MPD A 2001' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 7 ? CYS A 7 . ? 1_555 ? 2 AC1 4 CYS A 10 ? CYS A 10 . ? 1_555 ? 3 AC1 4 CYS A 24 ? CYS A 24 . ? 1_555 ? 4 AC1 4 CYS A 27 ? CYS A 27 . ? 1_555 ? 5 AC2 2 LEU A 185 ? LEU A 368 . ? 1_555 ? 6 AC2 2 PRO A 186 ? PRO A 369 . ? 1_555 ? 7 AC3 2 PRO A 44 ? PRO A 44 . ? 1_555 ? 8 AC3 2 PHE A 46 ? PHE A 46 . ? 1_555 ? 9 AC4 9 TRP A 59 ? TRP A 59 . ? 7_645 ? 10 AC4 9 LYS A 62 ? LYS A 62 . ? 7_645 ? 11 AC4 9 TRP A 63 ? TRP A 63 . ? 1_555 ? 12 AC4 9 LEU A 64 ? LEU A 64 . ? 1_555 ? 13 AC4 9 SER A 65 ? SER A 65 . ? 1_555 ? 14 AC4 9 ARG A 96 ? ARG A 96 . ? 1_555 ? 15 AC4 9 HOH F . ? HOH A 2048 . ? 1_555 ? 16 AC4 9 HOH F . ? HOH A 2055 . ? 1_555 ? 17 AC4 9 HOH F . ? HOH A 2081 . ? 1_555 ? # _atom_sites.entry_id 2EXU _atom_sites.fract_transf_matrix[1][1] 0.01859 _atom_sites.fract_transf_matrix[1][2] 0.00000 _atom_sites.fract_transf_matrix[1][3] 0.00000 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.01859 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.00565 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 SER 2 2 ? ? ? A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 CYS 7 7 7 CYS CYS A . n A 1 8 MET 8 8 8 MET MET A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 CYS 10 10 10 CYS CYS A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 THR 16 16 16 THR THR A . n A 1 17 ASN 17 17 17 ASN ASN A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 CYS 24 24 24 CYS CYS A . n A 1 25 PRO 25 25 25 PRO PRO A . n A 1 26 ASN 26 26 26 ASN ASN A . n A 1 27 CYS 27 27 27 CYS CYS A . n A 1 28 GLN 28 28 28 GLN GLN A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 ILE 30 30 30 ILE ILE A . n A 1 31 PHE 31 31 31 PHE PHE A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 THR 38 38 38 THR THR A . n A 1 39 MET 39 39 39 MET MET A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 CYS 41 41 41 CYS CYS A . n A 1 42 THR 42 42 42 THR THR A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 SER 45 45 45 SER SER A . n A 1 46 PHE 46 46 46 PHE PHE A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 VAL 50 50 50 VAL VAL A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 MET 52 52 52 MET MET A . n A 1 53 CYS 53 53 53 CYS CYS A . n A 1 54 LYS 54 54 54 LYS LYS A . n A 1 55 PRO 55 55 55 PRO PRO A . n A 1 56 THR 56 56 56 THR THR A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 TRP 59 59 59 TRP TRP A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 TRP 63 63 63 TRP TRP A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 HIS 68 68 68 HIS HIS A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 ILE 70 70 70 ILE ILE A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 GLY 72 72 72 GLY GLY A . n A 1 73 MET 73 73 73 MET MET A . n A 1 74 TYR 74 74 74 TYR TYR A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 LYS 77 77 77 LYS LYS A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 ASP 79 79 79 ASP ASP A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 ARG 81 81 81 ARG ARG A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 PRO 83 83 83 PRO PRO A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 VAL 86 86 86 VAL VAL A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 GLU 88 88 88 GLU GLU A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 PRO 91 91 91 PRO PRO A . n A 1 92 HIS 92 92 92 HIS HIS A . n A 1 93 TYR 93 93 93 TYR TYR A . n A 1 94 LYS 94 94 94 LYS LYS A . n A 1 95 PRO 95 95 95 PRO PRO A . n A 1 96 ARG 96 96 96 ARG ARG A . n A 1 97 ASP 97 97 97 ASP ASP A . n A 1 98 GLY 98 98 98 GLY GLY A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 GLY 100 100 100 GLY GLY A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 ALA 102 285 285 ALA ALA A . n A 1 103 THR 103 286 286 THR THR A . n A 1 104 ILE 104 287 287 ILE ILE A . n A 1 105 TRP 105 288 288 TRP TRP A . n A 1 106 GLY 106 289 289 GLY GLY A . n A 1 107 VAL 107 290 290 VAL VAL A . n A 1 108 ARG 108 291 291 ARG ARG A . n A 1 109 CYS 109 292 292 CYS CYS A . n A 1 110 ARG 110 293 293 ARG ARG A . n A 1 111 PRO 111 294 294 PRO PRO A . n A 1 112 GLY 112 295 295 GLY GLY A . n A 1 113 LYS 113 296 296 LYS LYS A . n A 1 114 GLU 114 297 297 GLU GLU A . n A 1 115 LYS 115 298 298 LYS LYS A . n A 1 116 GLU 116 299 299 GLU GLU A . n A 1 117 LEU 117 300 300 LEU LEU A . n A 1 118 ILE 118 301 301 ILE ILE A . n A 1 119 ARG 119 302 302 ARG ARG A . n A 1 120 LYS 120 303 303 LYS LYS A . n A 1 121 LEU 121 304 304 LEU LEU A . n A 1 122 LEU 122 305 305 LEU LEU A . n A 1 123 LYS 123 306 306 LYS LYS A . n A 1 124 LYS 124 307 307 LYS LYS A . n A 1 125 LYS 125 308 308 LYS LYS A . n A 1 126 PHE 126 309 309 PHE PHE A . n A 1 127 ASN 127 310 310 ASN ASN A . n A 1 128 LEU 128 311 311 LEU LEU A . n A 1 129 ASP 129 312 312 ASP ASP A . n A 1 130 ARG 130 313 313 ARG ARG A . n A 1 131 ALA 131 314 314 ALA ALA A . n A 1 132 MET 132 315 315 MET MET A . n A 1 133 GLY 133 316 316 GLY GLY A . n A 1 134 LYS 134 317 317 LYS LYS A . n A 1 135 LYS 135 318 318 LYS LYS A . n A 1 136 LYS 136 319 319 LYS LYS A . n A 1 137 LEU 137 320 320 LEU LEU A . n A 1 138 LYS 138 321 321 LYS LYS A . n A 1 139 ILE 139 322 322 ILE ILE A . n A 1 140 LEU 140 323 323 LEU LEU A . n A 1 141 SER 141 324 324 SER SER A . n A 1 142 ILE 142 325 325 ILE ILE A . n A 1 143 PHE 143 326 326 PHE PHE A . n A 1 144 GLN 144 327 327 GLN GLN A . n A 1 145 ARG 145 328 328 ARG ARG A . n A 1 146 ASP 146 329 329 ASP ASP A . n A 1 147 ASN 147 330 330 ASN ASN A . n A 1 148 TYR 148 331 331 TYR TYR A . n A 1 149 THR 149 332 332 THR THR A . n A 1 150 GLY 150 333 333 GLY GLY A . n A 1 151 ARG 151 334 334 ARG ARG A . n A 1 152 ILE 152 335 335 ILE ILE A . n A 1 153 TYR 153 336 336 TYR TYR A . n A 1 154 ILE 154 337 337 ILE ILE A . n A 1 155 GLU 155 338 338 GLU GLU A . n A 1 156 ALA 156 339 339 ALA ALA A . n A 1 157 PRO 157 340 340 PRO PRO A . n A 1 158 LYS 158 341 341 LYS LYS A . n A 1 159 GLN 159 342 342 GLN GLN A . n A 1 160 SER 160 343 343 SER SER A . n A 1 161 VAL 161 344 344 VAL VAL A . n A 1 162 ILE 162 345 345 ILE ILE A . n A 1 163 GLU 163 346 346 GLU GLU A . n A 1 164 LYS 164 347 347 LYS LYS A . n A 1 165 PHE 165 348 348 PHE PHE A . n A 1 166 CYS 166 349 349 CYS CYS A . n A 1 167 ASN 167 350 350 ASN ASN A . n A 1 168 GLY 168 351 351 GLY GLY A . n A 1 169 VAL 169 352 352 VAL VAL A . n A 1 170 PRO 170 353 353 PRO PRO A . n A 1 171 ASP 171 354 354 ASP ASP A . n A 1 172 ILE 172 355 355 ILE ILE A . n A 1 173 TYR 173 356 356 TYR TYR A . n A 1 174 ILE 174 357 357 ILE ILE A . n A 1 175 SER 175 358 358 SER SER A . n A 1 176 GLN 176 359 359 GLN GLN A . n A 1 177 LYS 177 360 360 LYS LYS A . n A 1 178 LEU 178 361 361 LEU LEU A . n A 1 179 LEU 179 362 362 LEU LEU A . n A 1 180 ILE 180 363 363 ILE ILE A . n A 1 181 PRO 181 364 364 PRO PRO A . n A 1 182 VAL 182 365 365 VAL VAL A . n A 1 183 GLN 183 366 366 GLN GLN A . n A 1 184 GLU 184 367 367 GLU GLU A . n A 1 185 LEU 185 368 368 LEU LEU A . n A 1 186 PRO 186 369 369 PRO PRO A . n A 1 187 LEU 187 370 370 LEU LEU A . n A 1 188 LEU 188 371 371 LEU LEU A . n A 1 189 LEU 189 372 372 LEU LEU A . n A 1 190 LYS 190 373 373 LYS LYS A . n A 1 191 PRO 191 374 374 PRO PRO A . n A 1 192 ASN 192 375 375 ASN ASN A . n A 1 193 LEU 193 376 376 LEU LEU A . n A 1 194 GLU 194 377 377 GLU ALA A . n A 1 195 HIS 195 378 ? ? ? A . n A 1 196 HIS 196 379 ? ? ? A . n A 1 197 HIS 197 380 ? ? ? A . n A 1 198 HIS 198 381 ? ? ? A . n A 1 199 HIS 199 382 ? ? ? A . n A 1 200 HIS 200 383 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 501 501 ZN ZN A . C 3 EOH 1 1001 1001 EOH EOH A . D 3 EOH 1 1002 1002 EOH EOH A . E 4 MPD 1 2001 2001 MPD MPD A . F 5 HOH 1 2002 1 HOH HOH A . F 5 HOH 2 2003 2 HOH HOH A . F 5 HOH 3 2004 3 HOH HOH A . F 5 HOH 4 2005 4 HOH HOH A . F 5 HOH 5 2006 5 HOH HOH A . F 5 HOH 6 2007 6 HOH HOH A . F 5 HOH 7 2008 7 HOH HOH A . F 5 HOH 8 2009 8 HOH HOH A . F 5 HOH 9 2010 9 HOH HOH A . F 5 HOH 10 2011 10 HOH HOH A . F 5 HOH 11 2012 11 HOH HOH A . F 5 HOH 12 2013 12 HOH HOH A . F 5 HOH 13 2014 13 HOH HOH A . F 5 HOH 14 2015 14 HOH HOH A . F 5 HOH 15 2016 15 HOH HOH A . F 5 HOH 16 2017 16 HOH HOH A . F 5 HOH 17 2018 17 HOH HOH A . F 5 HOH 18 2019 18 HOH HOH A . F 5 HOH 19 2020 19 HOH HOH A . F 5 HOH 20 2021 20 HOH HOH A . F 5 HOH 21 2022 21 HOH HOH A . F 5 HOH 22 2023 22 HOH HOH A . F 5 HOH 23 2024 23 HOH HOH A . F 5 HOH 24 2025 24 HOH HOH A . F 5 HOH 25 2026 25 HOH HOH A . F 5 HOH 26 2027 26 HOH HOH A . F 5 HOH 27 2028 27 HOH HOH A . F 5 HOH 28 2029 28 HOH HOH A . F 5 HOH 29 2030 29 HOH HOH A . F 5 HOH 30 2031 30 HOH HOH A . F 5 HOH 31 2032 31 HOH HOH A . F 5 HOH 32 2033 32 HOH HOH A . F 5 HOH 33 2034 33 HOH HOH A . F 5 HOH 34 2035 34 HOH HOH A . F 5 HOH 35 2036 35 HOH HOH A . F 5 HOH 36 2037 36 HOH HOH A . F 5 HOH 37 2038 37 HOH HOH A . F 5 HOH 38 2039 38 HOH HOH A . F 5 HOH 39 2040 39 HOH HOH A . F 5 HOH 40 2041 40 HOH HOH A . F 5 HOH 41 2042 41 HOH HOH A . F 5 HOH 42 2043 42 HOH HOH A . F 5 HOH 43 2044 43 HOH HOH A . F 5 HOH 44 2045 44 HOH HOH A . F 5 HOH 45 2046 45 HOH HOH A . F 5 HOH 46 2047 46 HOH HOH A . F 5 HOH 47 2048 47 HOH HOH A . F 5 HOH 48 2049 48 HOH HOH A . F 5 HOH 49 2050 49 HOH HOH A . F 5 HOH 50 2051 50 HOH HOH A . F 5 HOH 51 2052 51 HOH HOH A . F 5 HOH 52 2053 52 HOH HOH A . F 5 HOH 53 2054 53 HOH HOH A . F 5 HOH 54 2055 54 HOH HOH A . F 5 HOH 55 2056 55 HOH HOH A . F 5 HOH 56 2057 56 HOH HOH A . F 5 HOH 57 2058 57 HOH HOH A . F 5 HOH 58 2059 58 HOH HOH A . F 5 HOH 59 2060 59 HOH HOH A . F 5 HOH 60 2061 60 HOH HOH A . F 5 HOH 61 2062 61 HOH HOH A . F 5 HOH 62 2063 62 HOH HOH A . F 5 HOH 63 2064 63 HOH HOH A . F 5 HOH 64 2065 64 HOH HOH A . F 5 HOH 65 2066 65 HOH HOH A . F 5 HOH 66 2067 66 HOH HOH A . F 5 HOH 67 2068 67 HOH HOH A . F 5 HOH 68 2069 68 HOH HOH A . F 5 HOH 69 2070 69 HOH HOH A . F 5 HOH 70 2071 70 HOH HOH A . F 5 HOH 71 2072 71 HOH HOH A . F 5 HOH 72 2073 72 HOH HOH A . F 5 HOH 73 2074 73 HOH HOH A . F 5 HOH 74 2075 74 HOH HOH A . F 5 HOH 75 2076 75 HOH HOH A . F 5 HOH 76 2077 76 HOH HOH A . F 5 HOH 77 2078 77 HOH HOH A . F 5 HOH 78 2079 78 HOH HOH A . F 5 HOH 79 2080 79 HOH HOH A . F 5 HOH 80 2081 80 HOH HOH A . F 5 HOH 81 2082 81 HOH HOH A . F 5 HOH 82 2083 82 HOH HOH A . F 5 HOH 83 2084 83 HOH HOH A . F 5 HOH 84 2085 84 HOH HOH A . F 5 HOH 85 2086 85 HOH HOH A . F 5 HOH 86 2087 86 HOH HOH A . F 5 HOH 87 2088 87 HOH HOH A . F 5 HOH 88 2089 88 HOH HOH A . F 5 HOH 89 2090 89 HOH HOH A . F 5 HOH 90 2091 90 HOH HOH A . F 5 HOH 91 2092 91 HOH HOH A . F 5 HOH 92 2093 92 HOH HOH A . F 5 HOH 93 2094 93 HOH HOH A . F 5 HOH 94 2095 94 HOH HOH A . F 5 HOH 95 2096 95 HOH HOH A . F 5 HOH 96 2097 96 HOH HOH A . F 5 HOH 97 2098 97 HOH HOH A . F 5 HOH 98 2099 98 HOH HOH A . F 5 HOH 99 2100 99 HOH HOH A . F 5 HOH 100 2101 100 HOH HOH A . F 5 HOH 101 2102 101 HOH HOH A . F 5 HOH 102 2103 102 HOH HOH A . F 5 HOH 103 2104 103 HOH HOH A . F 5 HOH 104 2105 104 HOH HOH A . F 5 HOH 105 2106 105 HOH HOH A . F 5 HOH 106 2107 106 HOH HOH A . F 5 HOH 107 2108 107 HOH HOH A . F 5 HOH 108 2109 108 HOH HOH A . F 5 HOH 109 2110 109 HOH HOH A . F 5 HOH 110 2111 110 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7020 ? 1 MORE -49 ? 1 'SSA (A^2)' 18310 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_645 y+1,x-1,-z+3/4 0.0000000000 1.0000000000 0.0000000000 53.8010000000 1.0000000000 0.0000000000 0.0000000000 -53.8010000000 0.0000000000 0.0000000000 -1.0000000000 132.8400000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 7 ? A CYS 7 ? 1_555 ZN ? B ZN . ? A ZN 501 ? 1_555 SG ? A CYS 10 ? A CYS 10 ? 1_555 107.7 ? 2 SG ? A CYS 7 ? A CYS 7 ? 1_555 ZN ? B ZN . ? A ZN 501 ? 1_555 SG ? A CYS 27 ? A CYS 27 ? 1_555 112.9 ? 3 SG ? A CYS 10 ? A CYS 10 ? 1_555 ZN ? B ZN . ? A ZN 501 ? 1_555 SG ? A CYS 27 ? A CYS 27 ? 1_555 104.7 ? 4 SG ? A CYS 7 ? A CYS 7 ? 1_555 ZN ? B ZN . ? A ZN 501 ? 1_555 SG ? A CYS 24 ? A CYS 24 ? 1_555 120.6 ? 5 SG ? A CYS 10 ? A CYS 10 ? 1_555 ZN ? B ZN . ? A ZN 501 ? 1_555 SG ? A CYS 24 ? A CYS 24 ? 1_555 96.5 ? 6 SG ? A CYS 27 ? A CYS 27 ? 1_555 ZN ? B ZN . ? A ZN 501 ? 1_555 SG ? A CYS 24 ? A CYS 24 ? 1_555 111.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-11-08 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-08-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Version format compliance' 5 4 'Structure model' 'Refinement description' 6 4 'Structure model' 'Source and taxonomy' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' entity_src_gen 2 4 'Structure model' software # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_low 20.00 _diffrn_reflns.pdbx_d_res_high 3.03 _diffrn_reflns.number 5315 _diffrn_reflns.pdbx_percent_possible_obs 95.500 _diffrn_reflns.pdbx_Rmerge_I_obs 0.058 _diffrn_reflns.pdbx_chi_squared 1.139 _diffrn_reflns.pdbx_redundancy 6.000 _diffrn_reflns.pdbx_rejects ? _diffrn_reflns.pdbx_number_obs ? _diffrn_reflns.av_sigmaI_over_netI ? _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_observed_criterion ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.percent_possible_obs _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.Rsym_value 1 20.00 6.46 96.700 0.046 1.669 5.300 ? ? ? 1 6.46 5.16 98.100 0.055 1.505 5.900 ? ? ? 1 5.16 4.51 98.200 0.051 1.254 6.000 ? ? ? 1 4.51 4.11 97.500 0.051 1.150 6.000 ? ? ? 1 4.11 3.81 97.400 0.052 1.128 6.200 ? ? ? 1 3.81 3.59 97.400 0.059 0.990 6.200 ? ? ? 1 3.59 3.41 97.800 0.061 0.960 6.200 ? ? ? 1 3.41 3.26 96.900 0.074 0.950 6.200 ? ? ? 1 3.26 3.14 96.800 0.088 0.824 6.300 ? ? ? 1 3.14 3.03 77.500 0.116 0.889 5.300 ? ? ? # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 46.5500 9.2368 58.3463 -0.1008 -0.1751 -0.1216 -0.0072 -0.0161 0.0002 2.9477 1.9218 3.6578 0.7152 -1.3640 -1.1269 -0.0324 0.0089 0.0234 0.0809 0.0767 -0.0355 -0.2876 -0.0428 -0.1084 'X-RAY DIFFRACTION' 2 ? refined 57.9870 -20.5564 58.7174 -0.0540 -0.1983 -0.1239 -0.0075 -0.0492 0.0162 2.7735 7.0502 8.6732 -0.5532 1.1983 -0.3985 0.0415 0.0256 -0.0671 0.0408 0.0161 0.0167 -0.1742 0.3467 -0.0045 'X-RAY DIFFRACTION' 3 ? refined 51.7714 -3.2491 59.7281 0.1159 0.0656 0.0335 -0.0116 -0.0140 0.0240 0.1401 1.3354 0.3790 0.0041 -0.1297 -0.2670 0.0042 0.0066 -0.0108 0.0212 -0.0119 0.0115 -0.1456 0.0592 -0.0207 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 3 A 101 ALL A 3 A 101 'X-RAY DIFFRACTION' ? 2 1 D 1 D 1 ALL A 1002 A 1002 'X-RAY DIFFRACTION' ? 3 1 E 1 E 1 ALL A 2001 A 2001 'X-RAY DIFFRACTION' ? 4 2 A 102 A 194 ALL A 285 A 377 'X-RAY DIFFRACTION' ? 5 2 C 1 C 1 ALL A 1001 A 1001 'X-RAY DIFFRACTION' ? 6 3 F 1 F 110 ALL A 2002 A 2111 'X-RAY DIFFRACTION' ? # _pdbx_phasing_MAD_set_site.id 1 _pdbx_phasing_MAD_set_site.atom_type_symbol Zn _pdbx_phasing_MAD_set_site.occupancy 1.062 _pdbx_phasing_MAD_set_site.fract_x 0.228 _pdbx_phasing_MAD_set_site.fract_y 0.096 _pdbx_phasing_MAD_set_site.fract_z 0.078 _pdbx_phasing_MAD_set_site.b_iso 36.922 # _pdbx_phasing_dm.entry_id 2EXU _pdbx_phasing_dm.fom_acentric 0.740 _pdbx_phasing_dm.fom_centric 0.680 _pdbx_phasing_dm.fom 0.730 _pdbx_phasing_dm.reflns_acentric 10780 _pdbx_phasing_dm.reflns_centric 2720 _pdbx_phasing_dm.reflns 13500 # loop_ _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.delta_phi_final _pdbx_phasing_dm_shell.delta_phi_initial _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 6.400 21.424 ? ? 0.940 0.810 0.890 363 297 660 4.000 6.400 ? ? 0.930 0.830 0.900 1356 529 1885 3.200 4.000 ? ? 0.850 0.820 0.850 1793 475 2268 2.800 3.200 ? ? 0.810 0.680 0.780 1859 425 2284 2.400 2.800 ? ? 0.680 0.550 0.660 3342 636 3978 2.200 2.400 ? ? 0.550 0.420 0.530 2067 358 2425 # _phasing.method SAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal SCALA . ? program 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/INDEX.html Fortran ? 1 SOLVE 2.09 25-Apr-2005 program 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 2 RESOLVE 2.09 25-Apr-2005 program 'Terwilliger, T. C' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 3 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran ? 4 PDB_EXTRACT 1.700 'May. 30, 2005' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 5 MAR . ? ? ? ? 'data reduction' ? ? ? 6 CCP4 '(SCALA)' ? ? ? ? 'data scaling' ? ? ? 7 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 NH2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ARG _pdbx_validate_close_contact.auth_seq_id_1 328 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 LYS _pdbx_validate_close_contact.auth_seq_id_2 373 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.14 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C A GLY 100 ? ? N A SER 101 ? ? 1.166 1.336 -0.170 0.023 Y 2 1 C A SER 101 ? ? N A ALA 285 ? ? 1.488 1.336 0.152 0.023 Y # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 GLY _pdbx_validate_rmsd_angle.auth_seq_id_1 100 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 SER _pdbx_validate_rmsd_angle.auth_seq_id_2 101 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CA _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 SER _pdbx_validate_rmsd_angle.auth_seq_id_3 101 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 139.11 _pdbx_validate_rmsd_angle.angle_target_value 121.70 _pdbx_validate_rmsd_angle.angle_deviation 17.41 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.50 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 101 ? ? -41.85 159.65 2 1 ASP A 354 ? ? 75.92 -4.28 # _pdbx_validate_polymer_linkage.id 1 _pdbx_validate_polymer_linkage.PDB_model_num 1 _pdbx_validate_polymer_linkage.auth_atom_id_1 C _pdbx_validate_polymer_linkage.auth_asym_id_1 A _pdbx_validate_polymer_linkage.auth_comp_id_1 GLY _pdbx_validate_polymer_linkage.auth_seq_id_1 100 _pdbx_validate_polymer_linkage.PDB_ins_code_1 ? _pdbx_validate_polymer_linkage.label_alt_id_1 ? _pdbx_validate_polymer_linkage.auth_atom_id_2 N _pdbx_validate_polymer_linkage.auth_asym_id_2 A _pdbx_validate_polymer_linkage.auth_comp_id_2 SER _pdbx_validate_polymer_linkage.auth_seq_id_2 101 _pdbx_validate_polymer_linkage.PDB_ins_code_2 ? _pdbx_validate_polymer_linkage.label_alt_id_2 ? _pdbx_validate_polymer_linkage.dist 1.17 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 377 ? CG ? A GLU 194 CG 2 1 Y 1 A GLU 377 ? CD ? A GLU 194 CD 3 1 Y 1 A GLU 377 ? OE1 ? A GLU 194 OE1 4 1 Y 1 A GLU 377 ? OE2 ? A GLU 194 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A SER 2 ? A SER 2 3 1 Y 1 A HIS 378 ? A HIS 195 4 1 Y 1 A HIS 379 ? A HIS 196 5 1 Y 1 A HIS 380 ? A HIS 197 6 1 Y 1 A HIS 381 ? A HIS 198 7 1 Y 1 A HIS 382 ? A HIS 199 8 1 Y 1 A HIS 383 ? A HIS 200 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 ETHANOL EOH 4 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 5 water HOH #