HEADER ISOMERASE/BIOSYNTHETIC PROTEIN 09-NOV-05 2EY4 TITLE CRYSTAL STRUCTURE OF A CBF5-NOP10-GAR1 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE TRNA PSEUDOURIDINE SYNTHASE B; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRNA PSEUDOURIDINE 55 SYNTHASE, PSI55 SYNTHASE, TRNA-URIDINE COMPND 5 ISOMERASE, TRNA PSEUDOURIDYLATE SYNTHASE; COMPND 6 EC: 5.4.99.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SMALL NUCLEOLAR RNP SIMILAR TO GAR1; COMPND 10 CHAIN: C, D; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: RIBOSOME BIOGENESIS PROTEIN NOP10; COMPND 14 CHAIN: E, F; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 GENE: TRUB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 9 ORGANISM_TAXID: 186497; SOURCE 10 STRAIN: DSM 3638; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 15 ORGANISM_TAXID: 2261; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRIMERIC COMPLEX, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS, SECSG, KEYWDS 3 ISOMERASE-BIOSYNTHETIC PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.RASHID,B.LIANG,H.LI,SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS AUTHOR 2 (SECSG) REVDAT 5 14-FEB-24 2EY4 1 REMARK LINK REVDAT 4 18-OCT-17 2EY4 1 REMARK REVDAT 3 13-JUL-11 2EY4 1 VERSN REVDAT 2 24-FEB-09 2EY4 1 VERSN REVDAT 1 24-JAN-06 2EY4 0 JRNL AUTH R.RASHID,B.LIANG,D.L.BAKER,O.A.YOUSSEF,Y.HE,K.PHIPPS, JRNL AUTH 2 R.M.TERNS,M.P.TERNS,H.LI JRNL TITL CRYSTAL STRUCTURE OF A CBF5-NOP10-GAR1 COMPLEX AND JRNL TITL 2 IMPLICATIONS IN RNA-GUIDED PSEUDOURIDYLATION AND JRNL TITL 3 DYSKERATOSIS CONGENITA. JRNL REF MOL.CELL V. 21 249 2006 JRNL REFN ISSN 1097-2765 JRNL PMID 16427014 JRNL DOI 10.1016/J.MOLCEL.2005.11.017 REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 388708.400 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 80.5 REMARK 3 NUMBER OF REFLECTIONS : 49301 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4967 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.11 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 38.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3656 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 385 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7278 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 176 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 13.29000 REMARK 3 B22 (A**2) : -4.87000 REMARK 3 B33 (A**2) : -8.42000 REMARK 3 B12 (A**2) : -2.68000 REMARK 3 B13 (A**2) : -0.09000 REMARK 3 B23 (A**2) : -4.24000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.27 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.33 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.820 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 43.68 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2EY4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1000035235. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAR-05; NULL REMARK 200 TEMPERATURE (KELVIN) : 173; NULL REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 22-ID; 8-BM REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000; 0.9792, 0.9794, 0.9537 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : BIOTEX REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51837 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 55.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: IN HANGING DROPS, PH 6.5, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, F REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -23.68407 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 11.73561 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -101.81817 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 4 REMARK 465 ALA A 5 REMARK 465 ARG A 6 REMARK 465 ASP A 7 REMARK 465 MET B 4 REMARK 465 ALA B 5 REMARK 465 ARG B 6 REMARK 465 ASP B 7 REMARK 465 GLU B 8 REMARK 465 VAL B 9 REMARK 465 ARG B 10 REMARK 465 MET C -6 REMARK 465 GLU C -5 REMARK 465 LYS C -4 REMARK 465 GLN C -3 REMARK 465 GLY C -2 REMARK 465 GLU C -1 REMARK 465 LYS C 0 REMARK 465 GLU C 74 REMARK 465 ARG C 75 REMARK 465 MET D -6 REMARK 465 GLU D -5 REMARK 465 LYS D -4 REMARK 465 GLN D -3 REMARK 465 GLY D -2 REMARK 465 GLU D -1 REMARK 465 LYS D 0 REMARK 465 MET E 1 REMARK 465 ARG E 2 REMARK 465 PHE E 3 REMARK 465 MET F 1 REMARK 465 ARG F 2 REMARK 465 PHE F 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 9 142.08 175.91 REMARK 500 ARG A 10 25.78 -77.26 REMARK 500 GLU A 39 15.60 -66.69 REMARK 500 GLU A 97 -119.25 38.41 REMARK 500 PRO A 144 -178.75 -63.79 REMARK 500 ALA A 148 158.17 59.59 REMARK 500 ARG A 151 49.49 -75.22 REMARK 500 TYR A 333 71.37 61.20 REMARK 500 LYS A 335 153.33 69.00 REMARK 500 GLU B 97 -121.78 38.21 REMARK 500 LYS B 335 128.81 95.78 REMARK 500 ARG C 3 -119.66 -71.32 REMARK 500 LEU C 4 76.50 50.21 REMARK 500 LYS C 6 91.74 79.40 REMARK 500 PRO C 24 -167.66 -74.77 REMARK 500 PHE C 37 114.00 68.15 REMARK 500 ASP C 43 148.47 -173.26 REMARK 500 PRO C 62 -144.16 -72.23 REMARK 500 GLU C 63 -21.27 67.09 REMARK 500 LEU D 4 -63.47 -101.45 REMARK 500 LEU D 35 23.66 49.21 REMARK 500 MET D 50 79.12 -118.18 REMARK 500 SER D 60 -74.08 -57.14 REMARK 500 GLU D 74 -160.42 -119.56 REMARK 500 CYS E 11 3.34 87.33 REMARK 500 TYR E 41 2.24 81.85 REMARK 500 LYS F 10 56.26 33.34 REMARK 500 CYS F 11 -36.58 -173.30 REMARK 500 VAL F 22 -76.98 -61.10 REMARK 500 CYS F 23 -145.91 -74.76 REMARK 500 THR F 27 152.55 -49.13 REMARK 500 ASP F 39 68.48 38.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS E 8 SG REMARK 620 2 CYS E 11 SG 110.7 REMARK 620 3 CYS E 20 SG 125.0 119.6 REMARK 620 4 CYS E 23 SG 77.5 111.4 102.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN F 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS F 8 SG REMARK 620 2 CYS F 11 SG 96.5 REMARK 620 3 CYS F 20 SG 94.2 156.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN E 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN F 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PFU-1661227-001 RELATED DB: TARGETDB REMARK 900 RELATED ID: PFU-1665068-001 RELATED DB: TARGETDB REMARK 900 RELATED ID: PFU-1095826-001 RELATED DB: TARGETDB DBREF 2EY4 A 4 336 UNP Q7LWY0 TRUB_PYRFU 1 333 DBREF 2EY4 B 4 336 UNP Q7LWY0 TRUB_PYRFU 1 333 DBREF 2EY4 C -6 75 GB 18893970 AAL81915 1 82 DBREF 2EY4 D -6 75 GB 18893970 AAL81915 1 82 DBREF 2EY4 E 1 55 UNP Q8U1R4 NOP10_PYRFU 1 55 DBREF 2EY4 F 1 55 UNP Q8U1R4 NOP10_PYRFU 1 55 SEQRES 1 A 333 MET ALA ARG ASP GLU VAL ARG ARG ILE LEU PRO ALA ASP SEQRES 2 A 333 ILE LYS ARG GLU VAL LEU ILE LYS ASP GLU ASN ALA GLU SEQRES 3 A 333 THR ASN PRO ASP TRP GLY PHE PRO PRO GLU LYS ARG PRO SEQRES 4 A 333 ILE GLU MET HIS ILE GLN PHE GLY VAL ILE ASN LEU ASP SEQRES 5 A 333 LYS PRO PRO GLY PRO THR SER HIS GLU VAL VAL ALA TRP SEQRES 6 A 333 ILE LYS LYS ILE LEU ASN LEU GLU LYS ALA GLY HIS GLY SEQRES 7 A 333 GLY THR LEU ASP PRO LYS VAL SER GLY VAL LEU PRO VAL SEQRES 8 A 333 ALA LEU GLU LYS ALA THR ARG VAL VAL GLN ALA LEU LEU SEQRES 9 A 333 PRO ALA GLY LYS GLU TYR VAL ALA LEU MET HIS LEU HIS SEQRES 10 A 333 GLY ASP VAL PRO GLU ASP LYS ILE ILE GLN VAL MET LYS SEQRES 11 A 333 GLU PHE GLU GLY GLU ILE ILE GLN ARG PRO PRO LEU ARG SEQRES 12 A 333 SER ALA VAL LYS ARG ARG LEU ARG THR ARG LYS VAL TYR SEQRES 13 A 333 TYR ILE GLU VAL LEU GLU ILE GLU GLY ARG ASP VAL LEU SEQRES 14 A 333 PHE ARG VAL GLY VAL GLU ALA GLY THR TYR ILE ARG SER SEQRES 15 A 333 LEU ILE HIS HIS ILE GLY LEU ALA LEU GLY VAL GLY ALA SEQRES 16 A 333 HIS MET SER GLU LEU ARG ARG THR ARG SER GLY PRO PHE SEQRES 17 A 333 LYS GLU ASP GLU THR LEU ILE THR LEU HIS ASP LEU VAL SEQRES 18 A 333 ASP TYR TYR TYR PHE TRP LYS GLU ASP GLY ILE GLU GLU SEQRES 19 A 333 TYR PHE ARG LYS ALA ILE GLN PRO MET GLU LYS ALA VAL SEQRES 20 A 333 GLU HIS LEU PRO LYS VAL TRP ILE LYS ASP SER ALA VAL SEQRES 21 A 333 ALA ALA VAL THR HIS GLY ALA ASP LEU ALA VAL PRO GLY SEQRES 22 A 333 ILE ALA LYS LEU HIS ALA GLY ILE LYS ARG GLY ASP LEU SEQRES 23 A 333 VAL ALA ILE MET THR LEU LYS ASP GLU LEU VAL ALA LEU SEQRES 24 A 333 GLY LYS ALA MET MET THR SER GLN GLU MET LEU GLU LYS SEQRES 25 A 333 THR LYS GLY ILE ALA VAL ASP VAL GLU LYS VAL PHE MET SEQRES 26 A 333 PRO ARG ASP TRP TYR PRO LYS LEU SEQRES 1 B 333 MET ALA ARG ASP GLU VAL ARG ARG ILE LEU PRO ALA ASP SEQRES 2 B 333 ILE LYS ARG GLU VAL LEU ILE LYS ASP GLU ASN ALA GLU SEQRES 3 B 333 THR ASN PRO ASP TRP GLY PHE PRO PRO GLU LYS ARG PRO SEQRES 4 B 333 ILE GLU MET HIS ILE GLN PHE GLY VAL ILE ASN LEU ASP SEQRES 5 B 333 LYS PRO PRO GLY PRO THR SER HIS GLU VAL VAL ALA TRP SEQRES 6 B 333 ILE LYS LYS ILE LEU ASN LEU GLU LYS ALA GLY HIS GLY SEQRES 7 B 333 GLY THR LEU ASP PRO LYS VAL SER GLY VAL LEU PRO VAL SEQRES 8 B 333 ALA LEU GLU LYS ALA THR ARG VAL VAL GLN ALA LEU LEU SEQRES 9 B 333 PRO ALA GLY LYS GLU TYR VAL ALA LEU MET HIS LEU HIS SEQRES 10 B 333 GLY ASP VAL PRO GLU ASP LYS ILE ILE GLN VAL MET LYS SEQRES 11 B 333 GLU PHE GLU GLY GLU ILE ILE GLN ARG PRO PRO LEU ARG SEQRES 12 B 333 SER ALA VAL LYS ARG ARG LEU ARG THR ARG LYS VAL TYR SEQRES 13 B 333 TYR ILE GLU VAL LEU GLU ILE GLU GLY ARG ASP VAL LEU SEQRES 14 B 333 PHE ARG VAL GLY VAL GLU ALA GLY THR TYR ILE ARG SER SEQRES 15 B 333 LEU ILE HIS HIS ILE GLY LEU ALA LEU GLY VAL GLY ALA SEQRES 16 B 333 HIS MET SER GLU LEU ARG ARG THR ARG SER GLY PRO PHE SEQRES 17 B 333 LYS GLU ASP GLU THR LEU ILE THR LEU HIS ASP LEU VAL SEQRES 18 B 333 ASP TYR TYR TYR PHE TRP LYS GLU ASP GLY ILE GLU GLU SEQRES 19 B 333 TYR PHE ARG LYS ALA ILE GLN PRO MET GLU LYS ALA VAL SEQRES 20 B 333 GLU HIS LEU PRO LYS VAL TRP ILE LYS ASP SER ALA VAL SEQRES 21 B 333 ALA ALA VAL THR HIS GLY ALA ASP LEU ALA VAL PRO GLY SEQRES 22 B 333 ILE ALA LYS LEU HIS ALA GLY ILE LYS ARG GLY ASP LEU SEQRES 23 B 333 VAL ALA ILE MET THR LEU LYS ASP GLU LEU VAL ALA LEU SEQRES 24 B 333 GLY LYS ALA MET MET THR SER GLN GLU MET LEU GLU LYS SEQRES 25 B 333 THR LYS GLY ILE ALA VAL ASP VAL GLU LYS VAL PHE MET SEQRES 26 B 333 PRO ARG ASP TRP TYR PRO LYS LEU SEQRES 1 C 82 MET GLU LYS GLN GLY GLU LYS MET LYS ARG LEU GLY LYS SEQRES 2 C 82 VAL LEU HIS TYR ALA LYS GLN GLY PHE LEU ILE VAL ARG SEQRES 3 C 82 THR ASN TRP VAL PRO SER LEU ASN ASP ARG VAL VAL ASP SEQRES 4 C 82 LYS ARG LEU GLN PHE VAL GLY ILE VAL LYS ASP VAL PHE SEQRES 5 C 82 GLY PRO VAL LYS MET PRO TYR VAL ALA ILE LYS PRO LYS SEQRES 6 C 82 VAL SER ASN PRO GLU ILE TYR VAL GLY GLU VAL LEU TYR SEQRES 7 C 82 VAL ASP GLU ARG SEQRES 1 D 82 MET GLU LYS GLN GLY GLU LYS MET LYS ARG LEU GLY LYS SEQRES 2 D 82 VAL LEU HIS TYR ALA LYS GLN GLY PHE LEU ILE VAL ARG SEQRES 3 D 82 THR ASN TRP VAL PRO SER LEU ASN ASP ARG VAL VAL ASP SEQRES 4 D 82 LYS ARG LEU GLN PHE VAL GLY ILE VAL LYS ASP VAL PHE SEQRES 5 D 82 GLY PRO VAL LYS MET PRO TYR VAL ALA ILE LYS PRO LYS SEQRES 6 D 82 VAL SER ASN PRO GLU ILE TYR VAL GLY GLU VAL LEU TYR SEQRES 7 D 82 VAL ASP GLU ARG SEQRES 1 E 55 MET ARG PHE ARG ILE ARG LYS CYS PRO LYS CYS GLY ARG SEQRES 2 E 55 TYR THR LEU LYS GLU VAL CYS PRO VAL CYS GLY GLU LYS SEQRES 3 E 55 THR LYS VAL ALA HIS PRO PRO ARG PHE SER PRO GLU ASP SEQRES 4 E 55 PRO TYR GLY GLU TYR ARG ARG ARG TRP LYS ARG GLU VAL SEQRES 5 E 55 LEU GLY ILE SEQRES 1 F 55 MET ARG PHE ARG ILE ARG LYS CYS PRO LYS CYS GLY ARG SEQRES 2 F 55 TYR THR LEU LYS GLU VAL CYS PRO VAL CYS GLY GLU LYS SEQRES 3 F 55 THR LYS VAL ALA HIS PRO PRO ARG PHE SER PRO GLU ASP SEQRES 4 F 55 PRO TYR GLY GLU TYR ARG ARG ARG TRP LYS ARG GLU VAL SEQRES 5 F 55 LEU GLY ILE HET ZN E 201 1 HET ZN F 301 1 HETNAM ZN ZINC ION FORMUL 7 ZN 2(ZN 2+) FORMUL 9 HOH *176(H2 O) HELIX 1 1 LEU A 13 ILE A 17 5 5 HELIX 2 2 PRO A 37 ARG A 41 5 5 HELIX 3 3 PRO A 42 PHE A 49 1 8 HELIX 4 4 THR A 61 LEU A 73 1 13 HELIX 5 5 LYS A 98 ARG A 101 5 4 HELIX 6 6 VAL A 102 LEU A 107 1 6 HELIX 7 7 PRO A 124 GLU A 134 1 11 HELIX 8 8 TYR A 182 LEU A 194 1 13 HELIX 9 9 THR A 219 GLY A 234 1 16 HELIX 10 10 GLU A 236 ALA A 242 1 7 HELIX 11 11 GLU A 247 GLU A 251 5 5 HELIX 12 12 LYS A 259 THR A 267 1 9 HELIX 13 13 THR A 308 LYS A 315 1 8 HELIX 14 14 LEU B 13 ILE B 17 5 5 HELIX 15 15 PRO B 37 ARG B 41 5 5 HELIX 16 16 PRO B 42 PHE B 49 1 8 HELIX 17 17 THR B 61 LEU B 73 1 13 HELIX 18 18 LYS B 98 LEU B 106 5 9 HELIX 19 19 PRO B 124 PHE B 135 1 12 HELIX 20 20 TYR B 182 GLY B 195 1 14 HELIX 21 21 THR B 219 GLY B 234 1 16 HELIX 22 22 GLU B 236 ALA B 242 1 7 HELIX 23 23 GLU B 247 GLU B 251 5 5 HELIX 24 24 LYS B 259 HIS B 268 1 10 HELIX 25 25 THR B 308 LYS B 315 1 8 HELIX 26 26 ASN D 61 VAL D 66 5 6 HELIX 27 27 TYR E 41 GLY E 54 1 14 HELIX 28 28 TYR F 41 LEU F 53 1 13 SHEET 1 A 7 VAL A 21 ILE A 23 0 SHEET 2 A 7 ILE A 277 HIS A 281 -1 O LEU A 280 N LEU A 22 SHEET 3 A 7 LYS A 255 ILE A 258 -1 N TRP A 257 O LYS A 279 SHEET 4 A 7 LEU A 289 THR A 294 1 O MET A 293 N ILE A 258 SHEET 5 A 7 LEU A 299 ALA A 305 -1 O ALA A 301 N ILE A 292 SHEET 6 A 7 ILE A 319 VAL A 326 -1 O ASP A 322 N LYS A 304 SHEET 7 A 7 LEU A 272 ALA A 273 -1 N LEU A 272 O ALA A 320 SHEET 1 B11 VAL C 7 ALA C 11 0 SHEET 2 B11 PHE C 15 ARG C 19 -1 O ILE C 17 N LEU C 8 SHEET 3 B11 TYR C 52 PRO C 57 -1 O ILE C 55 N LEU C 16 SHEET 4 B11 GLY C 39 PRO C 47 -1 N PHE C 45 O TYR C 52 SHEET 5 B11 GLY A 137 GLN A 141 -1 N ILE A 140 O GLY C 46 SHEET 6 B11 ARG A 154 GLU A 167 -1 O VAL A 158 N GLY A 137 SHEET 7 B11 ASP A 170 VAL A 177 -1 O ARG A 174 N GLU A 162 SHEET 8 B11 LYS A 111 LEU A 119 -1 N LYS A 111 O VAL A 177 SHEET 9 B11 ALA A 198 SER A 208 -1 O HIS A 199 N HIS A 118 SHEET 10 B11 SER A 89 LEU A 96 1 N SER A 89 O ARG A 205 SHEET 11 B11 ALA A 78 HIS A 80 -1 N GLY A 79 O ALA A 95 SHEET 1 C 9 TYR C 71 VAL C 72 0 SHEET 2 C 9 ARG C 29 VAL C 31 -1 N VAL C 31 O TYR C 71 SHEET 3 C 9 GLY C 39 PRO C 47 -1 O GLY C 39 N VAL C 30 SHEET 4 C 9 GLY A 137 GLN A 141 -1 N ILE A 140 O GLY C 46 SHEET 5 C 9 ARG A 154 GLU A 167 -1 O VAL A 158 N GLY A 137 SHEET 6 C 9 ASP A 170 VAL A 177 -1 O ARG A 174 N GLU A 162 SHEET 7 C 9 LYS A 111 LEU A 119 -1 N LYS A 111 O VAL A 177 SHEET 8 C 9 ALA A 198 SER A 208 -1 O HIS A 199 N HIS A 118 SHEET 9 C 9 PHE A 211 LYS A 212 -1 O PHE A 211 N SER A 208 SHEET 1 D 5 PHE A 211 LYS A 212 0 SHEET 2 D 5 ALA A 198 SER A 208 -1 N SER A 208 O PHE A 211 SHEET 3 D 5 SER A 89 LEU A 96 1 N SER A 89 O ARG A 205 SHEET 4 D 5 GLY A 50 LYS A 56 -1 N ILE A 52 O VAL A 94 SHEET 5 D 5 GLN A 244 PRO A 245 -1 O GLN A 244 N VAL A 51 SHEET 1 E 7 VAL B 21 ILE B 23 0 SHEET 2 E 7 ILE B 277 HIS B 281 -1 O LEU B 280 N LEU B 22 SHEET 3 E 7 LYS B 255 ILE B 258 -1 N TRP B 257 O ALA B 278 SHEET 4 E 7 LEU B 289 MET B 293 1 O MET B 293 N VAL B 256 SHEET 5 E 7 LEU B 299 ALA B 305 -1 O GLY B 303 N VAL B 290 SHEET 6 E 7 ILE B 319 VAL B 326 -1 O ASP B 322 N LYS B 304 SHEET 7 E 7 LEU B 272 ALA B 273 -1 N LEU B 272 O ALA B 320 SHEET 1 F15 ILE B 243 PRO B 245 0 SHEET 2 F15 GLY B 50 LYS B 56 -1 N VAL B 51 O GLN B 244 SHEET 3 F15 SER B 89 LEU B 96 -1 O VAL B 94 N ILE B 52 SHEET 4 F15 ALA B 78 HIS B 80 -1 N GLY B 79 O ALA B 95 SHEET 5 F15 LYS B 111 LEU B 119 0 SHEET 6 F15 ASP B 170 VAL B 177 -1 O VAL B 177 N LYS B 111 SHEET 7 F15 THR B 155 GLU B 167 -1 N GLU B 165 O LEU B 172 SHEET 8 F15 GLY B 137 ILE B 140 -1 N GLY B 137 O VAL B 158 SHEET 9 F15 PHE D 37 PRO D 47 -1 O GLY D 46 N ILE B 140 SHEET 10 F15 TYR D 52 PRO D 57 -1 O TYR D 52 N PHE D 45 SHEET 11 F15 PHE D 15 ARG D 19 -1 N LEU D 16 O ILE D 55 SHEET 12 F15 LYS D 2 ALA D 11 -1 N LEU D 8 O ILE D 17 SHEET 13 F15 VAL D 69 ASP D 73 -1 O VAL D 72 N LYS D 2 SHEET 14 F15 ARG D 29 ASP D 32 -1 N VAL D 31 O TYR D 71 SHEET 15 F15 PHE D 37 PRO D 47 -1 O GLY D 39 N VAL D 30 SHEET 1 G 6 PHE B 211 LYS B 212 0 SHEET 2 G 6 ALA B 198 SER B 208 -1 N SER B 208 O PHE B 211 SHEET 3 G 6 LYS B 111 LEU B 119 -1 N HIS B 118 O HIS B 199 SHEET 4 G 6 ALA B 78 HIS B 80 0 SHEET 5 G 6 SER B 89 LEU B 96 -1 O ALA B 95 N GLY B 79 SHEET 6 G 6 ALA B 198 SER B 208 1 O ARG B 205 N SER B 89 SHEET 1 H 3 TYR E 14 THR E 15 0 SHEET 2 H 3 ARG E 6 LYS E 7 -1 N ARG E 6 O THR E 15 SHEET 3 H 3 LYS E 28 VAL E 29 -1 O LYS E 28 N LYS E 7 SHEET 1 I 3 ARG F 13 THR F 15 0 SHEET 2 I 3 ARG F 6 CYS F 8 -1 N ARG F 6 O THR F 15 SHEET 3 I 3 LYS F 28 VAL F 29 -1 O LYS F 28 N LYS F 7 LINK SG CYS E 8 ZN ZN E 201 1555 1555 2.64 LINK SG CYS E 11 ZN ZN E 201 1555 1555 2.67 LINK SG CYS E 20 ZN ZN E 201 1555 1555 2.36 LINK SG CYS E 23 ZN ZN E 201 1555 1555 2.74 LINK SG CYS F 8 ZN ZN F 301 1555 1555 2.69 LINK SG CYS F 11 ZN ZN F 301 1555 1555 2.73 LINK SG CYS F 20 ZN ZN F 301 1555 1555 2.73 SITE 1 AC1 5 CYS E 8 LYS E 10 CYS E 11 CYS E 20 SITE 2 AC1 5 CYS E 23 SITE 1 AC2 5 CYS F 8 CYS F 11 CYS F 20 CYS F 23 SITE 2 AC2 5 GLU F 25 CRYST1 36.087 75.361 103.240 95.90 96.90 94.99 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027711 0.002420 0.003654 0.00000 SCALE2 0.000000 0.013320 0.001535 0.00000 SCALE3 0.000000 0.000000 0.009821 0.00000