HEADER HYDROLASE 01-DEC-05 2F83 OBSLTE 08-MAR-23 2F83 6I58 TITLE CRYSTAL STRUCTURE AT 2.9 ANGSTROMS RESOLUTION OF HUMAN PLASMA TITLE 2 COAGULATION FACTOR XI ZYMOGEN COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAGULATION FACTOR XI; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PLASMA THROMBOPLASTIN ANTECEDENT, PTA, FXI; COMPND 5 EC: 3.4.21.27 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS PROTEASE, APPLE DOMAIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.PAPAGRIGORIOU,P.A.MCEWAN,P.N.WALSH,J.EMSLEY REVDAT 7 08-MAR-23 2F83 1 OBSLTE REMARK HETSYN REVDAT 6 29-JUL-20 2F83 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE ATOM REVDAT 5 13-JUL-11 2F83 1 VERSN REVDAT 4 23-JUN-09 2F83 1 TITLE REVDAT 3 24-FEB-09 2F83 1 VERSN REVDAT 2 20-JUN-06 2F83 1 JRNL REVDAT 1 16-MAY-06 2F83 0 JRNL AUTH E.PAPAGRIGORIOU,P.A.MCEWAN,P.N.WALSH,J.EMSLEY JRNL TITL CRYSTAL STRUCTURE OF THE FACTOR XI ZYMOGEN REVEALS A PATHWAY JRNL TITL 2 FOR TRANSACTIVATION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 13 557 2006 JRNL REFN ISSN 1545-9993 JRNL PMID 16699514 JRNL DOI 10.1038/NSMB1095 REMARK 2 REMARK 2 RESOLUTION. 2.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 31779 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RAMDOM REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1488 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4574 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 53 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.617 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2F83 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000035568. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07180 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34358 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 13.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.47900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.260 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 400, 0.1M MES, 5% PEG 3K, 5% REMARK 280 GLYCEROL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 127.17450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.33300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.33300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 190.76175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.33300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.33300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 63.58725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.33300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.33300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 190.76175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.33300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.33300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 63.58725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 127.17450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS ONE MOLECULE. FXI, HOWEVER, IS REMARK 300 CIRCULATING IN THE PLASMA AS A DIMER. THE BIOLOGICAL UNIT CAN BE REMARK 300 GENERATED APPLYING THE FOLLOWING SYMMETRY OPERATION: X, Y, 1-Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 254.34900 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -17 REMARK 465 ILE A -16 REMARK 465 PHE A -15 REMARK 465 LEU A -14 REMARK 465 TYR A -13 REMARK 465 GLN A -12 REMARK 465 VAL A -11 REMARK 465 VAL A -10 REMARK 465 HIS A -9 REMARK 465 PHE A -8 REMARK 465 ILE A -7 REMARK 465 LEU A -6 REMARK 465 PHE A -5 REMARK 465 THR A -4 REMARK 465 SER A -3 REMARK 465 VAL A -2 REMARK 465 SER A -1 REMARK 465 GLY A 0 REMARK 465 GLU A 1 REMARK 465 TYR A 503 REMARK 465 ARG A 504 REMARK 465 LYS A 505 REMARK 465 LEU A 506 REMARK 465 ARG A 507 REMARK 465 ASP A 508 REMARK 465 GLY A 544 REMARK 465 TYR A 545 REMARK 465 ARG A 546 REMARK 465 GLU A 547 REMARK 465 GLY A 548 REMARK 465 GLY A 549 REMARK 465 LYS A 550 REMARK 465 ASP A 551 REMARK 465 ALA A 552 REMARK 465 CYS A 553 REMARK 465 CYS A 581 REMARK 465 ALA A 582 REMARK 465 GLN A 583 REMARK 465 ARG A 584 REMARK 465 GLN A 605 REMARK 465 ALA A 606 REMARK 465 VAL A 607 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 73 CG CD NE CZ NH1 NH2 REMARK 480 HIS A 87 C CG ND1 CD2 CE1 NE2 REMARK 480 LYS A 252 CG CD CE NZ REMARK 480 LYS A 294 CG CD CE NZ REMARK 480 LYS A 301 CG CD CE NZ REMARK 480 LYS A 325 CG CD CE NZ REMARK 480 LYS A 365 CG CD CE NZ REMARK 480 LYS A 367 CG CD CE NZ REMARK 480 LYS A 437 CG CD CE NZ REMARK 480 LYS A 455 CG CD CE NZ REMARK 480 ARG A 530 CG CD NE CZ NH1 NH2 REMARK 480 ARG A 532 CG CD NE CZ NH1 NH2 REMARK 480 HIS A 534 CG ND1 CD2 CE1 NE2 REMARK 480 LYS A 535 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 10 OG SER A 78 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 287 OE2 GLU A 287 7556 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 28 CA - CB - SG ANGL. DEV. = 7.0 DEGREES REMARK 500 PRO A 139 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 PRO A 338 C - N - CA ANGL. DEV. = 12.6 DEGREES REMARK 500 GLY A 344 N - CA - C ANGL. DEV. = -15.7 DEGREES REMARK 500 ALA A 375 N - CA - C ANGL. DEV. = -21.3 DEGREES REMARK 500 CYS A 482 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 3 78.26 15.80 REMARK 500 GLN A 5 108.22 55.21 REMARK 500 LEU A 6 174.79 -41.28 REMARK 500 LYS A 8 109.88 -56.91 REMARK 500 ASP A 9 63.50 88.10 REMARK 500 THR A 18 159.85 167.95 REMARK 500 CYS A 38 -78.44 -46.26 REMARK 500 LEU A 39 -28.94 67.65 REMARK 500 PHE A 41 164.63 172.34 REMARK 500 ARG A 54 -18.77 74.54 REMARK 500 VAL A 64 -167.37 -76.58 REMARK 500 THR A 65 -25.25 62.60 REMARK 500 ARG A 73 115.21 -163.08 REMARK 500 SER A 86 -125.61 -90.54 REMARK 500 HIS A 87 107.46 4.84 REMARK 500 GLN A 88 179.59 -39.58 REMARK 500 ILE A 89 -117.84 -53.74 REMARK 500 SER A 90 57.05 122.61 REMARK 500 ALA A 91 -2.16 -54.15 REMARK 500 ASP A 95 156.18 -40.45 REMARK 500 GLN A 137 18.82 52.77 REMARK 500 PRO A 139 -77.22 -8.16 REMARK 500 LEU A 163 108.89 -168.13 REMARK 500 CYS A 175 25.86 -74.21 REMARK 500 ALA A 176 14.67 54.44 REMARK 500 ALA A 193 66.98 -162.72 REMARK 500 ASP A 194 -165.97 -115.31 REMARK 500 ASP A 198 166.05 179.86 REMARK 500 HIS A 214 49.77 -108.97 REMARK 500 PHE A 220 172.44 179.67 REMARK 500 SER A 225 167.79 -49.70 REMARK 500 PRO A 229 -89.77 -39.63 REMARK 500 LYS A 230 85.25 -58.17 REMARK 500 GLU A 231 -18.27 -40.05 REMARK 500 LYS A 253 123.17 177.96 REMARK 500 ARG A 266 -62.48 -24.50 REMARK 500 SER A 268 0.19 149.11 REMARK 500 VAL A 271 -45.56 -131.91 REMARK 500 SER A 276 140.34 -175.48 REMARK 500 ASP A 289 148.61 -178.53 REMARK 500 ALA A 293 136.09 -173.82 REMARK 500 SER A 295 142.47 62.99 REMARK 500 HIS A 296 -162.91 -64.22 REMARK 500 GLU A 297 -59.79 68.45 REMARK 500 ALA A 319 167.08 59.72 REMARK 500 GLU A 323 -162.28 -47.28 REMARK 500 LYS A 325 71.47 7.31 REMARK 500 SER A 333 -167.98 -105.53 REMARK 500 SER A 334 44.87 -98.64 REMARK 500 ASN A 335 -89.58 160.27 REMARK 500 REMARK 500 THIS ENTRY HAS 79 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 8 ASP A 9 146.46 REMARK 500 ASP A 9 THR A 10 -149.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG B 1 REMARK 610 NAG A 901 DBREF 2F83 A -17 607 UNP P03951 FA11_HUMAN 1 625 SEQRES 1 A 625 MET ILE PHE LEU TYR GLN VAL VAL HIS PHE ILE LEU PHE SEQRES 2 A 625 THR SER VAL SER GLY GLU CYS VAL THR GLN LEU LEU LYS SEQRES 3 A 625 ASP THR CYS PHE GLU GLY GLY ASP ILE THR THR VAL PHE SEQRES 4 A 625 THR PRO SER ALA LYS TYR CYS GLN VAL VAL CYS THR TYR SEQRES 5 A 625 HIS PRO ARG CYS LEU LEU PHE THR PHE THR ALA GLU SER SEQRES 6 A 625 PRO SER GLU ASP PRO THR ARG TRP PHE THR CYS VAL LEU SEQRES 7 A 625 LYS ASP SER VAL THR GLU THR LEU PRO ARG VAL ASN ARG SEQRES 8 A 625 THR ALA ALA ILE SER GLY TYR SER PHE LYS GLN CYS SER SEQRES 9 A 625 HIS GLN ILE SER ALA CYS ASN LYS ASP ILE TYR VAL ASP SEQRES 10 A 625 LEU ASP MET LYS GLY ILE ASN TYR ASN SER SER VAL ALA SEQRES 11 A 625 LYS SER ALA GLN GLU CYS GLN GLU ARG CYS THR ASP ASP SEQRES 12 A 625 VAL HIS CYS HIS PHE PHE THR TYR ALA THR ARG GLN PHE SEQRES 13 A 625 PRO SER LEU GLU HIS ARG ASN ILE CYS LEU LEU LYS HIS SEQRES 14 A 625 THR GLN THR GLY THR PRO THR ARG ILE THR LYS LEU ASP SEQRES 15 A 625 LYS VAL VAL SER GLY PHE SER LEU LYS SER CYS ALA LEU SEQRES 16 A 625 SER ASN LEU ALA CYS ILE ARG ASP ILE PHE PRO ASN THR SEQRES 17 A 625 VAL PHE ALA ASP SER ASN ILE ASP SER VAL MET ALA PRO SEQRES 18 A 625 ASP ALA PHE VAL CYS GLY ARG ILE CYS THR HIS HIS PRO SEQRES 19 A 625 GLY CYS LEU PHE PHE THR PHE PHE SER GLN GLU TRP PRO SEQRES 20 A 625 LYS GLU SER GLN ARG ASN LEU CYS LEU LEU LYS THR SER SEQRES 21 A 625 GLU SER GLY LEU PRO SER THR ARG ILE LYS LYS SER LYS SEQRES 22 A 625 ALA LEU SER GLY PHE SER LEU GLN SER CYS ARG HIS SER SEQRES 23 A 625 ILE PRO VAL PHE CYS HIS SER SER PHE TYR HIS ASP THR SEQRES 24 A 625 ASP PHE LEU GLY GLU GLU LEU ASP ILE VAL ALA ALA LYS SEQRES 25 A 625 SER HIS GLU ALA CYS GLN LYS LEU CYS THR ASN ALA VAL SEQRES 26 A 625 ARG CYS GLN PHE PHE THR TYR THR PRO ALA GLN ALA SER SEQRES 27 A 625 CYS ASN GLU GLY LYS GLY LYS CYS TYR LEU LYS LEU SER SEQRES 28 A 625 SER ASN GLY SER PRO THR LYS ILE LEU HIS GLY ARG GLY SEQRES 29 A 625 GLY ILE SER GLY TYR THR LEU ARG LEU CYS LYS MET ASP SEQRES 30 A 625 ASN GLU CYS THR THR LYS ILE LYS PRO ARG ILE VAL GLY SEQRES 31 A 625 GLY THR ALA SER VAL ARG GLY GLU TRP PRO TRP GLN VAL SEQRES 32 A 625 THR LEU HIS THR THR SER PRO THR GLN ARG HIS LEU CYS SEQRES 33 A 625 GLY GLY SER ILE ILE GLY ASN GLN TRP ILE LEU THR ALA SEQRES 34 A 625 ALA HIS CYS PHE TYR GLY VAL GLU SER PRO LYS ILE LEU SEQRES 35 A 625 ARG VAL TYR SER GLY ILE LEU ASN GLN SER GLU ILE LYS SEQRES 36 A 625 GLU ASP THR SER PHE PHE GLY VAL GLN GLU ILE ILE ILE SEQRES 37 A 625 HIS ASP GLN TYR LYS MET ALA GLU SER GLY TYR ASP ILE SEQRES 38 A 625 ALA LEU LEU LYS LEU GLU THR THR VAL ASN TYR THR ASP SEQRES 39 A 625 SER GLN ARG PRO ILE CYS LEU PRO SER LYS GLY ASP ARG SEQRES 40 A 625 ASN VAL ILE TYR THR ASP CYS TRP VAL THR GLY TRP GLY SEQRES 41 A 625 TYR ARG LYS LEU ARG ASP LYS ILE GLN ASN THR LEU GLN SEQRES 42 A 625 LYS ALA LYS ILE PRO LEU VAL THR ASN GLU GLU CYS GLN SEQRES 43 A 625 LYS ARG TYR ARG GLY HIS LYS ILE THR HIS LYS MET ILE SEQRES 44 A 625 CYS ALA GLY TYR ARG GLU GLY GLY LYS ASP ALA CYS LYS SEQRES 45 A 625 GLY ASP SER GLY GLY PRO LEU SER CYS LYS HIS ASN GLU SEQRES 46 A 625 VAL TRP HIS LEU VAL GLY ILE THR SER TRP GLY GLU GLY SEQRES 47 A 625 CYS ALA GLN ARG GLU ARG PRO GLY VAL TYR THR ASN VAL SEQRES 48 A 625 VAL GLU TYR VAL ASP TRP ILE LEU GLU LYS THR GLN ALA SEQRES 49 A 625 VAL MODRES 2F83 ASN A 432 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET NAG A 901 14 HET NAG A 920 14 HET PT A 998 1 HET PT A 999 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM PT PLATINUM (II) ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 5 PT 2(PT 2+) FORMUL 7 HOH *53(H2 O) HELIX 1 1 SER A 24 HIS A 35 1 12 HELIX 2 2 SER A 63 THR A 67 5 5 HELIX 3 3 SER A 114 ASP A 124 1 11 HELIX 4 4 ASP A 204 HIS A 214 1 11 HELIX 5 5 LYS A 230 ARG A 234 5 5 HELIX 6 6 LEU A 262 ARG A 266 5 5 HELIX 7 7 GLU A 297 ALA A 306 1 10 HELIX 8 8 LEU A 355 ASP A 359 5 5 HELIX 9 9 ALA A 411 TYR A 416 5 6 HELIX 10 10 SER A 420 LYS A 422 5 3 HELIX 11 11 ASN A 432 ILE A 436 5 5 HELIX 12 12 SER A 485 ARG A 489 5 5 HELIX 13 13 THR A 523 LYS A 529 1 7 HELIX 14 14 TYR A 596 LYS A 603 1 8 SHEET 1 A 5 LEU A 7 PHE A 12 0 SHEET 2 A 5 ARG A 70 TYR A 80 -1 O VAL A 71 N CYS A 11 SHEET 3 A 5 LEU A 40 THR A 44 -1 N PHE A 43 O ILE A 77 SHEET 4 A 5 THR A 57 LYS A 61 -1 O VAL A 59 N THR A 42 SHEET 5 A 5 ASP A 16 PHE A 21 -1 N VAL A 20 O CYS A 58 SHEET 1 B 5 TYR A 97 LYS A 103 0 SHEET 2 B 5 ARG A 159 PHE A 170 -1 O THR A 161 N ASP A 101 SHEET 3 B 5 PHE A 130 ALA A 134 -1 N TYR A 133 O VAL A 167 SHEET 4 B 5 ILE A 146 HIS A 151 -1 O LEU A 148 N THR A 132 SHEET 5 B 5 ILE A 105 VAL A 111 -1 N SER A 110 O CYS A 147 SHEET 1 C 5 PHE A 187 VAL A 191 0 SHEET 2 C 5 ILE A 251 PHE A 260 -1 O SER A 258 N PHE A 187 SHEET 3 C 5 PHE A 220 PHE A 224 -1 N PHE A 223 O LEU A 257 SHEET 4 C 5 LEU A 236 THR A 241 -1 O LEU A 238 N THR A 222 SHEET 5 C 5 SER A 195 MET A 201 -1 N ASP A 198 O LEU A 239 SHEET 1 D 5 TYR A 278 HIS A 279 0 SHEET 2 D 5 ILE A 348 TYR A 351 -1 O SER A 349 N TYR A 278 SHEET 3 D 5 PHE A 311 THR A 315 -1 N TYR A 314 O ILE A 348 SHEET 4 D 5 GLY A 326 LEU A 332 -1 O LYS A 327 N THR A 315 SHEET 5 D 5 GLU A 286 ALA A 293 -1 N ASP A 289 O LEU A 330 SHEET 1 E 2 ASP A 282 PHE A 283 0 SHEET 2 E 2 LYS A 340 ILE A 341 -1 O ILE A 341 N ASP A 282 SHEET 1 F 7 GLN A 384 THR A 389 0 SHEET 2 F 7 ARG A 395 ILE A 402 -1 O CYS A 398 N LEU A 387 SHEET 3 F 7 TRP A 407 THR A 410 -1 O LEU A 409 N SER A 401 SHEET 4 F 7 ALA A 464 LEU A 468 -1 O ALA A 464 N THR A 410 SHEET 5 F 7 PHE A 443 ILE A 450 -1 N GLN A 446 O LYS A 467 SHEET 6 F 7 LEU A 424 SER A 428 -1 N VAL A 426 O PHE A 443 SHEET 7 F 7 GLN A 384 THR A 389 -1 N THR A 386 O TYR A 427 SHEET 1 G 5 LYS A 518 ILE A 519 0 SHEET 2 G 5 CYS A 496 VAL A 498 -1 N CYS A 496 O ILE A 519 SHEET 3 G 5 PRO A 560 HIS A 565 -1 O SER A 562 N TRP A 497 SHEET 4 G 5 VAL A 568 TRP A 577 -1 O VAL A 568 N HIS A 565 SHEET 5 G 5 VAL A 589 ASN A 592 -1 O THR A 591 N ILE A 574 SSBOND 1 CYS A 2 CYS A 85 1555 1555 2.03 SSBOND 2 CYS A 28 CYS A 58 1555 1555 2.03 SSBOND 3 CYS A 32 CYS A 38 1555 1555 2.04 SSBOND 4 CYS A 92 CYS A 175 1555 1555 2.02 SSBOND 5 CYS A 118 CYS A 147 1555 1555 2.04 SSBOND 6 CYS A 122 CYS A 128 1555 1555 2.03 SSBOND 7 CYS A 182 CYS A 265 1555 1555 2.03 SSBOND 8 CYS A 208 CYS A 237 1555 1555 2.03 SSBOND 9 CYS A 212 CYS A 218 1555 1555 2.04 SSBOND 10 CYS A 273 CYS A 356 1555 1555 2.03 SSBOND 11 CYS A 299 CYS A 328 1555 1555 2.04 SSBOND 12 CYS A 303 CYS A 309 1555 1555 2.03 SSBOND 13 CYS A 321 CYS A 321 1555 7556 2.15 SSBOND 14 CYS A 362 CYS A 482 1555 1555 2.02 SSBOND 15 CYS A 398 CYS A 414 1555 1555 2.03 SSBOND 16 CYS A 496 CYS A 563 1555 1555 2.04 SSBOND 17 CYS A 527 CYS A 542 1555 1555 2.03 LINK ND2 ASN A 432 C1 NAG A 920 1555 1555 1.47 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.43 LINK PT PT A 999 O HOH A1003 1555 1555 3.56 CISPEP 1 HIS A 215 PRO A 216 0 -2.96 CISPEP 2 SER A 391 PRO A 392 0 -1.26 CRYST1 80.666 80.666 254.349 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012397 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012397 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003932 0.00000