data_2FCY # _entry.id 2FCY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2FCY pdb_00002fcy 10.2210/pdb2fcy/pdb NDB DR0024 ? ? RCSB RCSB035729 ? ? WWPDB D_1000035729 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2FCX 'HIV-1 DIS kissing-loop in complex with Neamine' unspecified PDB 1XP7 'subtype F HIV-1 DIS kissing-loop' unspecified PDB 1Y3S 'subtype F HIV-1 DIS kissing-loop' unspecified PDB 1FCZ 'HIV-1 DIS kissing-loop in complex with Ribostamycin' unspecified PDB 2FD0 'HIV-1 DIS kissing-loop in complex with lividomycin' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2FCY _pdbx_database_status.recvd_initial_deposition_date 2005-12-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ennifar, E.' 1 'Paillart, J.C.' 2 'Marquet, R.' 3 'Dumas, P.' 4 # _citation.id primary _citation.title 'Targeting the dimerization initiation site of HIV-1 RNA with aminoglycosides: from crystal to cell.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 34 _citation.page_first 2328 _citation.page_last 2339 _citation.year 2006 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16679451 _citation.pdbx_database_id_DOI 10.1093/nar/gkl317 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ennifar, E.' 1 ? primary 'Paillart, J.C.' 2 ? primary 'Bodlenner, A.' 3 ? primary 'Walter, P.' 4 ? primary 'Weibel, J.-M.' 5 ? primary 'Aubertin, A.-M.' 6 ? primary 'Pale, P.' 7 ? primary 'Dumas, P.' 8 ? primary 'Marquet, R.' 9 ? # _cell.entry_id 2FCY _cell.length_a 27.105 _cell.length_b 113.702 _cell.length_c 96.165 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2FCY _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'HIV-1 DIS RNA' 7465.368 2 ? ? ? ? 2 non-polymer syn NEOMYCIN 614.644 2 ? ? ? ? 3 non-polymer syn 'POTASSIUM ION' 39.098 6 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 5 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 6 water nat water 18.015 74 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'CU(5BU)GCUGAAGUGCACACAGCAAG' _entity_poly.pdbx_seq_one_letter_code_can CUUGCUGAAGUGCACACAGCAAG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 U n 1 3 5BU n 1 4 G n 1 5 C n 1 6 U n 1 7 G n 1 8 A n 1 9 A n 1 10 G n 1 11 U n 1 12 G n 1 13 C n 1 14 A n 1 15 C n 1 16 A n 1 17 C n 1 18 A n 1 19 G n 1 20 C n 1 21 A n 1 22 A n 1 23 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'This sequence occurs naturally in subtype F HIV-1' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2FCY _struct_ref.pdbx_db_accession 2FCY _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2FCY A 1 ? 23 ? 2FCY 1 ? 23 ? 1 23 2 1 2FCY B 1 ? 23 ? 2FCY 1 ? 23 ? 1 23 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5BU 'RNA linking' n "5-BROMO-URIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O9 P' 403.077 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 NMY non-polymer . NEOMYCIN 'MYCIFRADIN; NEOMAS; PIMAVECORT; VONAMYCIN' 'C23 H46 N6 O13' 614.644 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 2FCY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.48 _exptl_crystal.density_percent_sol 50.43 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 310 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'MPD, KCl, MgCl2, Na cacodylate pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 310K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2004-12-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91946 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.91946 # _reflns.entry_id 2FCY _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 40 _reflns.d_resolution_high 2.2 _reflns.number_obs 7689 _reflns.number_all ? _reflns.percent_possible_obs 96.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.059 _reflns.pdbx_netI_over_sigmaI 20.7 _reflns.B_iso_Wilson_estimate 53.8 _reflns.pdbx_redundancy 4.3 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.2 _reflns_shell.d_res_low ? _reflns_shell.percent_possible_all 90.2 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.231 _reflns_shell.meanI_over_sigI_obs 6.4 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2FCY _refine.ls_number_reflns_obs 7669 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 787754.23 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF 787754.23 _refine.ls_d_res_low 18.22 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 96.8 _refine.ls_R_factor_obs 0.235 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.235 _refine.ls_R_factor_R_free 0.253 _refine.ls_R_factor_R_free_error 0.010 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8.4 _refine.ls_number_reflns_R_free 644 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 35.1 _refine.aniso_B[1][1] 3.74 _refine.aniso_B[2][2] -4.67 _refine.aniso_B[3][3] 0.93 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.361152 _refine.solvent_model_param_bsol 35.2886 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 2FCX _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2FCY _refine_analyze.Luzzati_coordinate_error_obs 0.34 _refine_analyze.Luzzati_sigma_a_obs 0.36 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.40 _refine_analyze.Luzzati_sigma_a_free 0.39 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 980 _refine_hist.pdbx_number_atoms_ligand 96 _refine_hist.number_atoms_solvent 74 _refine_hist.number_atoms_total 1150 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 18.22 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 13.3 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.43 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.20 _refine_ls_shell.d_res_low 2.34 _refine_ls_shell.number_reflns_R_work 1095 _refine_ls_shell.R_factor_R_work 0.345 _refine_ls_shell.percent_reflns_obs 92.0 _refine_ls_shell.R_factor_R_free 0.309 _refine_ls_shell.R_factor_R_free_error 0.031 _refine_ls_shell.percent_reflns_R_free 8.4 _refine_ls_shell.number_reflns_R_free 101 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 water_rep.param water.top 'X-RAY DIFFRACTION' 2 dna-rna.param dna-rna.top 'X-RAY DIFFRACTION' 3 ion.param ion.top 'X-RAY DIFFRACTION' 4 bru_rep.param bru.top 'X-RAY DIFFRACTION' 5 neomycine.param neomycine.top 'X-RAY DIFFRACTION' # _struct.entry_id 2FCY _struct.title 'HIV-1 DIS kissing-loop in complex with Neomycin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2FCY _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'HIV-1, RNA, aminoglycoside, antibiotics' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 4 ? L N N 5 ? M N N 6 ? N N N 6 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A U 2 "O3'" ? ? ? 1_555 A 5BU 3 P ? ? A U 2 A 5BU 3 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale2 covale both ? A 5BU 3 "O3'" ? ? ? 1_555 A G 4 P ? ? A 5BU 3 A G 4 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale3 covale both ? B U 2 "O3'" ? ? ? 1_555 B 5BU 3 P ? ? B U 2 B 5BU 3 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale4 covale both ? B 5BU 3 "O3'" ? ? ? 1_555 B G 4 P ? ? B 5BU 3 B G 4 1_555 ? ? ? ? ? ? ? 1.609 ? ? metalc1 metalc ? ? A 5BU 3 O4 ? ? ? 1_555 F K . K ? ? A 5BU 3 A K 1004 1_555 ? ? ? ? ? ? ? 2.800 ? ? metalc2 metalc ? ? A G 4 O6 ? ? ? 1_555 F K . K ? ? A G 4 A K 1004 1_555 ? ? ? ? ? ? ? 2.770 ? ? metalc3 metalc ? ? A A 8 N1 ? ? ? 1_555 D K . K ? ? A A 8 A K 1002 1_555 ? ? ? ? ? ? ? 2.705 ? ? metalc4 metalc ? ? A A 8 OP1 ? ? ? 1_555 E K . K ? ? A A 8 A K 1003 1_555 ? ? ? ? ? ? ? 2.643 ? ? metalc5 metalc ? ? A A 8 "O4'" ? ? ? 1_555 G K . K ? ? A A 8 A K 1005 1_555 ? ? ? ? ? ? ? 3.184 ? ? metalc6 metalc ? ? A A 9 OP2 ? ? ? 1_555 E K . K ? ? A A 9 A K 1003 1_555 ? ? ? ? ? ? ? 3.012 ? ? metalc7 metalc ? ? C NMY . O4 ? ? ? 1_555 E K . K ? ? A NMY 1001 A K 1003 1_555 ? ? ? ? ? ? ? 3.045 ? ? metalc8 metalc ? ? E K . K ? ? ? 1_555 M HOH . O ? ? A K 1003 A HOH 1008 1_555 ? ? ? ? ? ? ? 3.254 ? ? metalc9 metalc ? ? E K . K ? ? ? 1_555 M HOH . O ? ? A K 1003 A HOH 1031 1_555 ? ? ? ? ? ? ? 3.216 ? ? metalc10 metalc ? ? E K . K ? ? ? 1_555 M HOH . O ? ? A K 1003 A HOH 1033 1_555 ? ? ? ? ? ? ? 2.975 ? ? metalc11 metalc ? ? E K . K ? ? ? 1_555 M HOH . O ? ? A K 1003 A HOH 1036 1_555 ? ? ? ? ? ? ? 3.278 ? ? metalc12 metalc ? ? F K . K ? ? ? 1_555 M HOH . O ? ? A K 1004 A HOH 1016 1_555 ? ? ? ? ? ? ? 2.668 ? ? metalc13 metalc ? ? G K . K ? ? ? 1_555 B A 9 N1 ? ? A K 1005 B A 9 3_555 ? ? ? ? ? ? ? 3.289 ? ? metalc14 metalc ? ? G K . K ? ? ? 1_555 K CL . CL ? ? A K 1005 B CL 2004 3_555 ? ? ? ? ? ? ? 2.999 ? ? metalc15 metalc ? ? G K . K ? ? ? 1_555 N HOH . O ? ? A K 1005 B HOH 2007 3_555 ? ? ? ? ? ? ? 3.169 ? ? metalc16 metalc ? ? G K . K ? ? ? 1_555 N HOH . O ? ? A K 1005 B HOH 2011 3_555 ? ? ? ? ? ? ? 3.589 ? ? metalc17 metalc ? ? B 5BU 3 BR ? ? ? 1_555 J K . K ? ? B 5BU 3 B K 2003 1_555 ? ? ? ? ? ? ? 3.708 ? ? metalc18 metalc ? ? B 5BU 3 O4 ? ? ? 1_555 J K . K ? ? B 5BU 3 B K 2003 1_555 ? ? ? ? ? ? ? 2.790 ? ? metalc19 metalc ? ? B G 4 O6 ? ? ? 1_555 J K . K ? ? B G 4 B K 2003 1_555 ? ? ? ? ? ? ? 2.752 ? ? metalc20 metalc ? ? B A 8 OP1 ? ? ? 1_555 I K . K ? ? B A 8 B K 2002 1_555 ? ? ? ? ? ? ? 2.913 ? ? metalc21 metalc ? ? B A 9 OP2 ? ? ? 1_555 I K . K ? ? B A 9 B K 2002 1_555 ? ? ? ? ? ? ? 2.838 ? ? metalc22 metalc ? ? H NMY . O4 ? ? ? 1_555 I K . K ? ? B NMY 2001 B K 2002 1_555 ? ? ? ? ? ? ? 2.853 ? ? metalc23 metalc ? ? I K . K ? ? ? 1_555 N HOH . O ? ? B K 2002 B HOH 2019 1_555 ? ? ? ? ? ? ? 2.864 ? ? metalc24 metalc ? ? J K . K ? ? ? 1_555 N HOH . O ? ? B K 2003 B HOH 2022 1_555 ? ? ? ? ? ? ? 2.464 ? ? metalc25 metalc ? ? J K . K ? ? ? 1_555 N HOH . O ? ? B K 2003 B HOH 2032 1_555 ? ? ? ? ? ? ? 3.233 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 A G 23 N1 ? ? A C 1 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 A G 23 O6 ? ? A C 1 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 A G 23 N2 ? ? A C 1 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 2 N3 ? ? ? 1_555 A A 22 N1 ? ? A U 2 A A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A U 2 O4 ? ? ? 1_555 A A 22 N6 ? ? A U 2 A A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A 5BU 3 N3 ? ? ? 1_555 A A 21 N1 ? ? A 5BU 3 A A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A 5BU 3 O4 ? ? ? 1_555 A A 21 N6 ? ? A 5BU 3 A A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 20 N3 ? ? A G 4 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 20 O2 ? ? A G 4 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 20 N4 ? ? A G 4 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 19 N1 ? ? A C 5 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 19 O6 ? ? A C 5 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 19 N2 ? ? A C 5 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 18 N1 ? ? A U 6 A A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 18 N6 ? ? A U 6 A A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 17 N3 ? ? A G 7 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 17 O2 ? ? A G 7 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 17 N4 ? ? A G 7 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 15 N3 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 15 O2 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 15 N4 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 11 N3 ? ? ? 1_555 B A 14 N1 ? ? A U 11 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 11 O4 ? ? ? 1_555 B A 14 N6 ? ? A U 11 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 12 N1 ? ? ? 1_555 B C 13 N3 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 12 N2 ? ? ? 1_555 B C 13 O2 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 12 O6 ? ? ? 1_555 B C 13 N4 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 13 N3 ? ? ? 1_555 B G 12 N1 ? ? A C 13 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 13 N4 ? ? ? 1_555 B G 12 O6 ? ? A C 13 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 13 O2 ? ? ? 1_555 B G 12 N2 ? ? A C 13 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A A 14 N1 ? ? ? 1_555 B U 11 N3 ? ? A A 14 B U 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A A 14 N6 ? ? ? 1_555 B U 11 O4 ? ? A A 14 B U 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 15 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 15 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 15 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 15 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 15 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 15 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B C 1 N3 ? ? ? 1_555 B G 23 N1 ? ? B C 1 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B C 1 N4 ? ? ? 1_555 B G 23 O6 ? ? B C 1 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B C 1 O2 ? ? ? 1_555 B G 23 N2 ? ? B C 1 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B U 2 N3 ? ? ? 1_555 B A 22 N1 ? ? B U 2 B A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B U 2 O4 ? ? ? 1_555 B A 22 N6 ? ? B U 2 B A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B 5BU 3 N3 ? ? ? 1_555 B A 21 N1 ? ? B 5BU 3 B A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B 5BU 3 O4 ? ? ? 1_555 B A 21 N6 ? ? B 5BU 3 B A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B G 4 N1 ? ? ? 1_555 B C 20 N3 ? ? B G 4 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B G 4 N2 ? ? ? 1_555 B C 20 O2 ? ? B G 4 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B G 4 O6 ? ? ? 1_555 B C 20 N4 ? ? B G 4 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B C 5 N3 ? ? ? 1_555 B G 19 N1 ? ? B C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B C 5 N4 ? ? ? 1_555 B G 19 O6 ? ? B C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B C 5 O2 ? ? ? 1_555 B G 19 N2 ? ? B C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B U 6 N3 ? ? ? 1_555 B A 18 N1 ? ? B U 6 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B U 6 O4 ? ? ? 1_555 B A 18 N6 ? ? B U 6 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B G 7 N1 ? ? ? 1_555 B C 17 N3 ? ? B G 7 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B G 7 N2 ? ? ? 1_555 B C 17 O2 ? ? B G 7 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B G 7 O6 ? ? ? 1_555 B C 17 N4 ? ? B G 7 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NMY 1001 ? 20 'BINDING SITE FOR RESIDUE NMY A 1001' AC2 Software B NMY 2001 ? 16 'BINDING SITE FOR RESIDUE NMY B 2001' AC3 Software A K 1002 ? 1 'BINDING SITE FOR RESIDUE K A 1002' AC4 Software A K 1003 ? 4 'BINDING SITE FOR RESIDUE K A 1003' AC5 Software A K 1004 ? 3 'BINDING SITE FOR RESIDUE K A 1004' AC6 Software A K 1005 ? 3 'BINDING SITE FOR RESIDUE K A 1005' AC7 Software B K 2002 ? 4 'BINDING SITE FOR RESIDUE K B 2002' AC8 Software B K 2003 ? 3 'BINDING SITE FOR RESIDUE K B 2003' AC9 Software B CL 2004 ? 2 'BINDING SITE FOR RESIDUE CL B 2004' BC1 Software B SO4 32 ? 3 'BINDING SITE FOR RESIDUE SO4 B 32' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 20 U A 6 ? U A 6 . ? 1_555 ? 2 AC1 20 G A 7 ? G A 7 . ? 1_555 ? 3 AC1 20 A A 8 ? A A 8 . ? 1_555 ? 4 AC1 20 A A 9 ? A A 9 . ? 1_555 ? 5 AC1 20 C A 13 ? C A 13 . ? 1_555 ? 6 AC1 20 A A 14 ? A A 14 . ? 1_555 ? 7 AC1 20 C A 15 ? C A 15 . ? 1_555 ? 8 AC1 20 A A 16 ? A A 16 . ? 1_555 ? 9 AC1 20 K E . ? K A 1003 . ? 1_555 ? 10 AC1 20 HOH M . ? HOH A 1010 . ? 1_555 ? 11 AC1 20 HOH M . ? HOH A 1012 . ? 1_555 ? 12 AC1 20 HOH M . ? HOH A 1022 . ? 1_555 ? 13 AC1 20 HOH M . ? HOH A 1023 . ? 1_555 ? 14 AC1 20 HOH M . ? HOH A 1025 . ? 1_555 ? 15 AC1 20 HOH M . ? HOH A 1033 . ? 1_555 ? 16 AC1 20 HOH M . ? HOH A 1037 . ? 1_555 ? 17 AC1 20 G B 10 ? G B 10 . ? 1_555 ? 18 AC1 20 U B 11 ? U B 11 . ? 1_555 ? 19 AC1 20 HOH N . ? HOH B 2023 . ? 1_555 ? 20 AC1 20 HOH N . ? HOH B 2035 . ? 1_555 ? 21 AC2 16 G A 10 ? G A 10 . ? 1_555 ? 22 AC2 16 U A 11 ? U A 11 . ? 1_555 ? 23 AC2 16 HOH M . ? HOH A 1035 . ? 1_555 ? 24 AC2 16 G B 7 ? G B 7 . ? 1_555 ? 25 AC2 16 A B 8 ? A B 8 . ? 1_555 ? 26 AC2 16 C B 13 ? C B 13 . ? 1_555 ? 27 AC2 16 A B 14 ? A B 14 . ? 1_555 ? 28 AC2 16 C B 15 ? C B 15 . ? 1_555 ? 29 AC2 16 A B 16 ? A B 16 . ? 1_555 ? 30 AC2 16 K I . ? K B 2002 . ? 1_555 ? 31 AC2 16 HOH N . ? HOH B 2008 . ? 1_555 ? 32 AC2 16 HOH N . ? HOH B 2019 . ? 1_555 ? 33 AC2 16 HOH N . ? HOH B 2024 . ? 1_555 ? 34 AC2 16 HOH N . ? HOH B 2028 . ? 1_555 ? 35 AC2 16 HOH N . ? HOH B 2034 . ? 1_555 ? 36 AC2 16 HOH N . ? HOH B 2035 . ? 1_555 ? 37 AC3 1 A A 8 ? A A 8 . ? 1_555 ? 38 AC4 4 A A 8 ? A A 8 . ? 1_555 ? 39 AC4 4 A A 9 ? A A 9 . ? 1_555 ? 40 AC4 4 NMY C . ? NMY A 1001 . ? 1_555 ? 41 AC4 4 HOH M . ? HOH A 1033 . ? 1_555 ? 42 AC5 3 5BU A 3 ? 5BU A 3 . ? 1_555 ? 43 AC5 3 G A 4 ? G A 4 . ? 1_555 ? 44 AC5 3 HOH M . ? HOH A 1016 . ? 1_555 ? 45 AC6 3 A A 8 ? A A 8 . ? 1_555 ? 46 AC6 3 A B 9 ? A B 9 . ? 3_555 ? 47 AC6 3 CL K . ? CL B 2004 . ? 3_555 ? 48 AC7 4 A B 8 ? A B 8 . ? 1_555 ? 49 AC7 4 A B 9 ? A B 9 . ? 1_555 ? 50 AC7 4 NMY H . ? NMY B 2001 . ? 1_555 ? 51 AC7 4 HOH N . ? HOH B 2019 . ? 1_555 ? 52 AC8 3 5BU B 3 ? 5BU B 3 . ? 1_555 ? 53 AC8 3 G B 4 ? G B 4 . ? 1_555 ? 54 AC8 3 HOH N . ? HOH B 2022 . ? 1_555 ? 55 AC9 2 K G . ? K A 1005 . ? 3_555 ? 56 AC9 2 A B 8 ? A B 8 . ? 1_555 ? 57 BC1 3 C B 1 ? C B 1 . ? 1_555 ? 58 BC1 3 U B 2 ? U B 2 . ? 1_555 ? 59 BC1 3 HOH N . ? HOH B 2027 . ? 1_555 ? # _database_PDB_matrix.entry_id 2FCY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2FCY _atom_sites.fract_transf_matrix[1][1] 0.036894 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008795 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010399 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C CL K N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 U 2 2 2 U U A . n A 1 3 5BU 3 3 3 5BU U A . n A 1 4 G 4 4 4 G G A . n A 1 5 C 5 5 5 C C A . n A 1 6 U 6 6 6 U U A . n A 1 7 G 7 7 7 G G A . n A 1 8 A 8 8 8 A A A . n A 1 9 A 9 9 9 A A A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n A 1 12 G 12 12 12 G G A . n A 1 13 C 13 13 13 C C A . n A 1 14 A 14 14 14 A A A . n A 1 15 C 15 15 15 C C A . n A 1 16 A 16 16 16 A A A . n A 1 17 C 17 17 17 C C A . n A 1 18 A 18 18 18 A A A . n A 1 19 G 19 19 19 G G A . n A 1 20 C 20 20 20 C C A . n A 1 21 A 21 21 21 A A A . n A 1 22 A 22 22 22 A A A . n A 1 23 G 23 23 23 G G A . n B 1 1 C 1 1 1 C C B . n B 1 2 U 2 2 2 U U B . n B 1 3 5BU 3 3 3 5BU U B . n B 1 4 G 4 4 4 G G B . n B 1 5 C 5 5 5 C C B . n B 1 6 U 6 6 6 U U B . n B 1 7 G 7 7 7 G G B . n B 1 8 A 8 8 8 A A B . n B 1 9 A 9 9 9 A A B . n B 1 10 G 10 10 10 G G B . n B 1 11 U 11 11 11 U U B . n B 1 12 G 12 12 12 G G B . n B 1 13 C 13 13 13 C C B . n B 1 14 A 14 14 14 A A B . n B 1 15 C 15 15 15 C C B . n B 1 16 A 16 16 16 A A B . n B 1 17 C 17 17 17 C C B . n B 1 18 A 18 18 18 A A B . n B 1 19 G 19 19 19 G G B . n B 1 20 C 20 20 20 C C B . n B 1 21 A 21 21 21 A A B . n B 1 22 A 22 22 22 A A B . n B 1 23 G 23 23 23 G G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NMY 1 1001 1 NMY NEO A . D 3 K 1 1002 2 K K1 A . E 3 K 1 1003 4 K K1 A . F 3 K 1 1004 6 K K1 A . G 3 K 1 1005 7 K K1 A . H 2 NMY 1 2001 1 NMY NEO B . I 3 K 1 2002 18 K K1 B . J 3 K 1 2003 22 K K1 B . K 4 CL 1 2004 11 CL CL1 B . L 5 SO4 1 32 32 SO4 SO4 B . M 6 HOH 1 1006 5 HOH HOH A . M 6 HOH 2 1007 8 HOH HOH A . M 6 HOH 3 1008 9 HOH HOH A . M 6 HOH 4 1009 13 HOH HOH A . M 6 HOH 5 1010 14 HOH HOH A . M 6 HOH 6 1011 15 HOH HOH A . M 6 HOH 7 1012 16 HOH HOH A . M 6 HOH 8 1013 20 HOH HOH A . M 6 HOH 9 1014 23 HOH HOH A . M 6 HOH 10 1015 26 HOH HOH A . M 6 HOH 11 1016 28 HOH HOH A . M 6 HOH 12 1017 29 HOH HOH A . M 6 HOH 13 1018 30 HOH HOH A . M 6 HOH 14 1019 31 HOH HOH A . M 6 HOH 15 1020 34 HOH HOH A . M 6 HOH 16 1021 35 HOH HOH A . M 6 HOH 17 1022 39 HOH HOH A . M 6 HOH 18 1023 42 HOH HOH A . M 6 HOH 19 1024 45 HOH HOH A . M 6 HOH 20 1025 46 HOH HOH A . M 6 HOH 21 1026 48 HOH HOH A . M 6 HOH 22 1027 49 HOH HOH A . M 6 HOH 23 1028 50 HOH HOH A . M 6 HOH 24 1029 51 HOH HOH A . M 6 HOH 25 1030 52 HOH HOH A . M 6 HOH 26 1031 53 HOH HOH A . M 6 HOH 27 1032 54 HOH HOH A . M 6 HOH 28 1033 55 HOH HOH A . M 6 HOH 29 1034 58 HOH HOH A . M 6 HOH 30 1035 59 HOH HOH A . M 6 HOH 31 1036 61 HOH HOH A . M 6 HOH 32 1037 62 HOH HOH A . M 6 HOH 33 1038 66 HOH HOH A . M 6 HOH 34 1039 70 HOH HOH A . M 6 HOH 35 1040 72 HOH HOH A . M 6 HOH 36 1041 78 HOH HOH A . M 6 HOH 37 1042 82 HOH HOH A . N 6 HOH 1 2005 1 HOH HOH B . N 6 HOH 2 2006 3 HOH HOH B . N 6 HOH 3 2007 10 HOH HOH B . N 6 HOH 4 2008 12 HOH HOH B . N 6 HOH 5 2009 17 HOH HOH B . N 6 HOH 6 2010 19 HOH HOH B . N 6 HOH 7 2011 21 HOH HOH B . N 6 HOH 8 2012 24 HOH HOH B . N 6 HOH 9 2013 25 HOH HOH B . N 6 HOH 10 2014 27 HOH HOH B . N 6 HOH 11 2015 33 HOH HOH B . N 6 HOH 12 2016 36 HOH HOH B . N 6 HOH 13 2017 37 HOH HOH B . N 6 HOH 14 2018 38 HOH HOH B . N 6 HOH 15 2019 40 HOH HOH B . N 6 HOH 16 2020 41 HOH HOH B . N 6 HOH 17 2021 43 HOH HOH B . N 6 HOH 18 2022 44 HOH HOH B . N 6 HOH 19 2023 47 HOH HOH B . N 6 HOH 20 2024 56 HOH HOH B . N 6 HOH 21 2025 57 HOH HOH B . N 6 HOH 22 2026 60 HOH HOH B . N 6 HOH 23 2027 63 HOH HOH B . N 6 HOH 24 2028 64 HOH HOH B . N 6 HOH 25 2029 65 HOH HOH B . N 6 HOH 26 2030 67 HOH HOH B . N 6 HOH 27 2031 68 HOH HOH B . N 6 HOH 28 2032 69 HOH HOH B . N 6 HOH 29 2033 71 HOH HOH B . N 6 HOH 30 2034 73 HOH HOH B . N 6 HOH 31 2035 74 HOH HOH B . N 6 HOH 32 2036 75 HOH HOH B . N 6 HOH 33 2037 76 HOH HOH B . N 6 HOH 34 2038 77 HOH HOH B . N 6 HOH 35 2039 79 HOH HOH B . N 6 HOH 36 2040 80 HOH HOH B . N 6 HOH 37 2041 81 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 5BU 3 A 5BU 3 ? U "5-BROMO-URIDINE-5'-MONOPHOSPHATE" 2 B 5BU 3 B 5BU 3 ? U "5-BROMO-URIDINE-5'-MONOPHOSPHATE" # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O4 ? A 5BU 3 ? A 5BU 3 ? 1_555 K ? F K . ? A K 1004 ? 1_555 O6 ? A G 4 ? A G 4 ? 1_555 72.8 ? 2 O4 ? A 5BU 3 ? A 5BU 3 ? 1_555 K ? F K . ? A K 1004 ? 1_555 O ? M HOH . ? A HOH 1016 ? 1_555 149.5 ? 3 O6 ? A G 4 ? A G 4 ? 1_555 K ? F K . ? A K 1004 ? 1_555 O ? M HOH . ? A HOH 1016 ? 1_555 78.8 ? 4 OP1 ? A A 8 ? A A 8 ? 1_555 K ? E K . ? A K 1003 ? 1_555 OP2 ? A A 9 ? A A 9 ? 1_555 90.3 ? 5 OP1 ? A A 8 ? A A 8 ? 1_555 K ? E K . ? A K 1003 ? 1_555 O4 ? C NMY . ? A NMY 1001 ? 1_555 66.9 ? 6 OP2 ? A A 9 ? A A 9 ? 1_555 K ? E K . ? A K 1003 ? 1_555 O4 ? C NMY . ? A NMY 1001 ? 1_555 105.7 ? 7 OP1 ? A A 8 ? A A 8 ? 1_555 K ? E K . ? A K 1003 ? 1_555 O ? M HOH . ? A HOH 1008 ? 1_555 118.4 ? 8 OP2 ? A A 9 ? A A 9 ? 1_555 K ? E K . ? A K 1003 ? 1_555 O ? M HOH . ? A HOH 1008 ? 1_555 137.8 ? 9 O4 ? C NMY . ? A NMY 1001 ? 1_555 K ? E K . ? A K 1003 ? 1_555 O ? M HOH . ? A HOH 1008 ? 1_555 64.8 ? 10 OP1 ? A A 8 ? A A 8 ? 1_555 K ? E K . ? A K 1003 ? 1_555 O ? M HOH . ? A HOH 1031 ? 1_555 81.8 ? 11 OP2 ? A A 9 ? A A 9 ? 1_555 K ? E K . ? A K 1003 ? 1_555 O ? M HOH . ? A HOH 1031 ? 1_555 90.3 ? 12 O4 ? C NMY . ? A NMY 1001 ? 1_555 K ? E K . ? A K 1003 ? 1_555 O ? M HOH . ? A HOH 1031 ? 1_555 144.4 ? 13 O ? M HOH . ? A HOH 1008 ? 1_555 K ? E K . ? A K 1003 ? 1_555 O ? M HOH . ? A HOH 1031 ? 1_555 122.0 ? 14 OP1 ? A A 8 ? A A 8 ? 1_555 K ? E K . ? A K 1003 ? 1_555 O ? M HOH . ? A HOH 1033 ? 1_555 121.5 ? 15 OP2 ? A A 9 ? A A 9 ? 1_555 K ? E K . ? A K 1003 ? 1_555 O ? M HOH . ? A HOH 1033 ? 1_555 58.9 ? 16 O4 ? C NMY . ? A NMY 1001 ? 1_555 K ? E K . ? A K 1003 ? 1_555 O ? M HOH . ? A HOH 1033 ? 1_555 75.2 ? 17 O ? M HOH . ? A HOH 1008 ? 1_555 K ? E K . ? A K 1003 ? 1_555 O ? M HOH . ? A HOH 1033 ? 1_555 79.2 ? 18 O ? M HOH . ? A HOH 1031 ? 1_555 K ? E K . ? A K 1003 ? 1_555 O ? M HOH . ? A HOH 1033 ? 1_555 138.7 ? 19 OP1 ? A A 8 ? A A 8 ? 1_555 K ? E K . ? A K 1003 ? 1_555 O ? M HOH . ? A HOH 1036 ? 1_555 64.5 ? 20 OP2 ? A A 9 ? A A 9 ? 1_555 K ? E K . ? A K 1003 ? 1_555 O ? M HOH . ? A HOH 1036 ? 1_555 153.9 ? 21 O4 ? C NMY . ? A NMY 1001 ? 1_555 K ? E K . ? A K 1003 ? 1_555 O ? M HOH . ? A HOH 1036 ? 1_555 71.9 ? 22 O ? M HOH . ? A HOH 1008 ? 1_555 K ? E K . ? A K 1003 ? 1_555 O ? M HOH . ? A HOH 1036 ? 1_555 66.0 ? 23 O ? M HOH . ? A HOH 1031 ? 1_555 K ? E K . ? A K 1003 ? 1_555 O ? M HOH . ? A HOH 1036 ? 1_555 79.8 ? 24 O ? M HOH . ? A HOH 1033 ? 1_555 K ? E K . ? A K 1003 ? 1_555 O ? M HOH . ? A HOH 1036 ? 1_555 139.6 ? 25 "O4'" ? A A 8 ? A A 8 ? 1_555 K ? G K . ? A K 1005 ? 1_555 N1 ? B A 9 ? B A 9 ? 3_555 81.8 ? 26 "O4'" ? A A 8 ? A A 8 ? 1_555 K ? G K . ? A K 1005 ? 1_555 CL ? K CL . ? B CL 2004 ? 3_555 138.8 ? 27 N1 ? B A 9 ? B A 9 ? 3_555 K ? G K . ? A K 1005 ? 1_555 CL ? K CL . ? B CL 2004 ? 3_555 82.3 ? 28 "O4'" ? A A 8 ? A A 8 ? 1_555 K ? G K . ? A K 1005 ? 1_555 O ? N HOH . ? B HOH 2007 ? 3_555 77.0 ? 29 N1 ? B A 9 ? B A 9 ? 3_555 K ? G K . ? A K 1005 ? 1_555 O ? N HOH . ? B HOH 2007 ? 3_555 62.5 ? 30 CL ? K CL . ? B CL 2004 ? 3_555 K ? G K . ? A K 1005 ? 1_555 O ? N HOH . ? B HOH 2007 ? 3_555 62.0 ? 31 "O4'" ? A A 8 ? A A 8 ? 1_555 K ? G K . ? A K 1005 ? 1_555 O ? N HOH . ? B HOH 2011 ? 3_555 143.5 ? 32 N1 ? B A 9 ? B A 9 ? 3_555 K ? G K . ? A K 1005 ? 1_555 O ? N HOH . ? B HOH 2011 ? 3_555 71.0 ? 33 CL ? K CL . ? B CL 2004 ? 3_555 K ? G K . ? A K 1005 ? 1_555 O ? N HOH . ? B HOH 2011 ? 3_555 61.8 ? 34 O ? N HOH . ? B HOH 2007 ? 3_555 K ? G K . ? A K 1005 ? 1_555 O ? N HOH . ? B HOH 2011 ? 3_555 109.4 ? 35 BR ? B 5BU 3 ? B 5BU 3 ? 1_555 K ? J K . ? B K 2003 ? 1_555 O4 ? B 5BU 3 ? B 5BU 3 ? 1_555 56.8 ? 36 BR ? B 5BU 3 ? B 5BU 3 ? 1_555 K ? J K . ? B K 2003 ? 1_555 O6 ? B G 4 ? B G 4 ? 1_555 126.5 ? 37 O4 ? B 5BU 3 ? B 5BU 3 ? 1_555 K ? J K . ? B K 2003 ? 1_555 O6 ? B G 4 ? B G 4 ? 1_555 81.6 ? 38 BR ? B 5BU 3 ? B 5BU 3 ? 1_555 K ? J K . ? B K 2003 ? 1_555 O ? N HOH . ? B HOH 2022 ? 1_555 68.9 ? 39 O4 ? B 5BU 3 ? B 5BU 3 ? 1_555 K ? J K . ? B K 2003 ? 1_555 O ? N HOH . ? B HOH 2022 ? 1_555 91.1 ? 40 O6 ? B G 4 ? B G 4 ? 1_555 K ? J K . ? B K 2003 ? 1_555 O ? N HOH . ? B HOH 2022 ? 1_555 81.2 ? 41 BR ? B 5BU 3 ? B 5BU 3 ? 1_555 K ? J K . ? B K 2003 ? 1_555 O ? N HOH . ? B HOH 2032 ? 1_555 148.4 ? 42 O4 ? B 5BU 3 ? B 5BU 3 ? 1_555 K ? J K . ? B K 2003 ? 1_555 O ? N HOH . ? B HOH 2032 ? 1_555 146.1 ? 43 O6 ? B G 4 ? B G 4 ? 1_555 K ? J K . ? B K 2003 ? 1_555 O ? N HOH . ? B HOH 2032 ? 1_555 84.6 ? 44 O ? N HOH . ? B HOH 2022 ? 1_555 K ? J K . ? B K 2003 ? 1_555 O ? N HOH . ? B HOH 2032 ? 1_555 117.2 ? 45 OP1 ? B A 8 ? B A 8 ? 1_555 K ? I K . ? B K 2002 ? 1_555 OP2 ? B A 9 ? B A 9 ? 1_555 79.7 ? 46 OP1 ? B A 8 ? B A 8 ? 1_555 K ? I K . ? B K 2002 ? 1_555 O4 ? H NMY . ? B NMY 2001 ? 1_555 66.3 ? 47 OP2 ? B A 9 ? B A 9 ? 1_555 K ? I K . ? B K 2002 ? 1_555 O4 ? H NMY . ? B NMY 2001 ? 1_555 118.0 ? 48 OP1 ? B A 8 ? B A 8 ? 1_555 K ? I K . ? B K 2002 ? 1_555 O ? N HOH . ? B HOH 2019 ? 1_555 113.0 ? 49 OP2 ? B A 9 ? B A 9 ? 1_555 K ? I K . ? B K 2002 ? 1_555 O ? N HOH . ? B HOH 2019 ? 1_555 66.2 ? 50 O4 ? H NMY . ? B NMY 2001 ? 1_555 K ? I K . ? B K 2002 ? 1_555 O ? N HOH . ? B HOH 2019 ? 1_555 81.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-05-16 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.value' 18 4 'Structure model' '_struct_conn.conn_type_id' 19 4 'Structure model' '_struct_conn.id' 20 4 'Structure model' '_struct_conn.pdbx_dist_value' 21 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 22 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 23 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 36 4 'Structure model' '_struct_conn.ptnr2_symmetry' 37 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 38 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 39 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 MOLREP phasing . ? 4 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id A _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 9 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.054 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5BU P P N N 1 5BU OP1 O N N 2 5BU OP2 O N N 3 5BU OP3 O N N 4 5BU "O5'" O N N 5 5BU "C5'" C N N 6 5BU "C4'" C N R 7 5BU "O4'" O N N 8 5BU "C3'" C N S 9 5BU "O3'" O N N 10 5BU "C2'" C N R 11 5BU "O2'" O N N 12 5BU "C1'" C N R 13 5BU N1 N N N 14 5BU C2 C N N 15 5BU O2 O N N 16 5BU N3 N N N 17 5BU C4 C N N 18 5BU O4 O N N 19 5BU C5 C N N 20 5BU C6 C N N 21 5BU BR BR N N 22 5BU HOP2 H N N 23 5BU HOP3 H N N 24 5BU "H5'" H N N 25 5BU "H5''" H N N 26 5BU "H4'" H N N 27 5BU "H3'" H N N 28 5BU "HO3'" H N N 29 5BU "H2'" H N N 30 5BU "HO2'" H N N 31 5BU "H1'" H N N 32 5BU H3 H N N 33 5BU H6 H N N 34 A OP3 O N N 35 A P P N N 36 A OP1 O N N 37 A OP2 O N N 38 A "O5'" O N N 39 A "C5'" C N N 40 A "C4'" C N R 41 A "O4'" O N N 42 A "C3'" C N S 43 A "O3'" O N N 44 A "C2'" C N R 45 A "O2'" O N N 46 A "C1'" C N R 47 A N9 N Y N 48 A C8 C Y N 49 A N7 N Y N 50 A C5 C Y N 51 A C6 C Y N 52 A N6 N N N 53 A N1 N Y N 54 A C2 C Y N 55 A N3 N Y N 56 A C4 C Y N 57 A HOP3 H N N 58 A HOP2 H N N 59 A "H5'" H N N 60 A "H5''" H N N 61 A "H4'" H N N 62 A "H3'" H N N 63 A "HO3'" H N N 64 A "H2'" H N N 65 A "HO2'" H N N 66 A "H1'" H N N 67 A H8 H N N 68 A H61 H N N 69 A H62 H N N 70 A H2 H N N 71 C OP3 O N N 72 C P P N N 73 C OP1 O N N 74 C OP2 O N N 75 C "O5'" O N N 76 C "C5'" C N N 77 C "C4'" C N R 78 C "O4'" O N N 79 C "C3'" C N S 80 C "O3'" O N N 81 C "C2'" C N R 82 C "O2'" O N N 83 C "C1'" C N R 84 C N1 N N N 85 C C2 C N N 86 C O2 O N N 87 C N3 N N N 88 C C4 C N N 89 C N4 N N N 90 C C5 C N N 91 C C6 C N N 92 C HOP3 H N N 93 C HOP2 H N N 94 C "H5'" H N N 95 C "H5''" H N N 96 C "H4'" H N N 97 C "H3'" H N N 98 C "HO3'" H N N 99 C "H2'" H N N 100 C "HO2'" H N N 101 C "H1'" H N N 102 C H41 H N N 103 C H42 H N N 104 C H5 H N N 105 C H6 H N N 106 CL CL CL N N 107 G OP3 O N N 108 G P P N N 109 G OP1 O N N 110 G OP2 O N N 111 G "O5'" O N N 112 G "C5'" C N N 113 G "C4'" C N R 114 G "O4'" O N N 115 G "C3'" C N S 116 G "O3'" O N N 117 G "C2'" C N R 118 G "O2'" O N N 119 G "C1'" C N R 120 G N9 N Y N 121 G C8 C Y N 122 G N7 N Y N 123 G C5 C Y N 124 G C6 C N N 125 G O6 O N N 126 G N1 N N N 127 G C2 C N N 128 G N2 N N N 129 G N3 N N N 130 G C4 C Y N 131 G HOP3 H N N 132 G HOP2 H N N 133 G "H5'" H N N 134 G "H5''" H N N 135 G "H4'" H N N 136 G "H3'" H N N 137 G "HO3'" H N N 138 G "H2'" H N N 139 G "HO2'" H N N 140 G "H1'" H N N 141 G H8 H N N 142 G H1 H N N 143 G H21 H N N 144 G H22 H N N 145 HOH O O N N 146 HOH H1 H N N 147 HOH H2 H N N 148 K K K N N 149 NMY C1 C N R 150 NMY O1 O N N 151 NMY C2 C N R 152 NMY N2 N N N 153 NMY C3 C N R 154 NMY O3 O N N 155 NMY C4 C N S 156 NMY O4 O N N 157 NMY C5 C N R 158 NMY O5 O N N 159 NMY C6 C N N 160 NMY C7 C N R 161 NMY N7 N N N 162 NMY C12 C N S 163 NMY C11 C N R 164 NMY O11 O N N 165 NMY C10 C N R 166 NMY C9 C N S 167 NMY N9 N N N 168 NMY C8 C N N 169 NMY C13 C N S 170 NMY C14 C N R 171 NMY C15 C N S 172 NMY C16 C N R 173 NMY O16 O N N 174 NMY C17 C N N 175 NMY C21 C N S 176 NMY C20 C N R 177 NMY C19 C N R 178 NMY C18 C N R 179 NMY O18 O N N 180 NMY C22 C N S 181 NMY O22 O N N 182 NMY C23 C N N 183 NMY N6 N N N 184 NMY O14 O N N 185 NMY O20 O N N 186 NMY O21 O N N 187 NMY O17 O N N 188 NMY O12 O N N 189 NMY N19 N N N 190 NMY N23 N N N 191 NMY H1 H N N 192 NMY H2 H N N 193 NMY HN21 H N N 194 NMY HN22 H N N 195 NMY H3 H N N 196 NMY HO3 H N N 197 NMY H4 H N N 198 NMY HO4 H N N 199 NMY H5 H N N 200 NMY H61 H N N 201 NMY H62 H N N 202 NMY H7 H N N 203 NMY H71 H N N 204 NMY H72 H N N 205 NMY H12 H N N 206 NMY H11 H N N 207 NMY H10 H N N 208 NMY H9 H N N 209 NMY H91 H N N 210 NMY H92 H N N 211 NMY H81 H N N 212 NMY H82 H N N 213 NMY H13 H N N 214 NMY H14 H N N 215 NMY H15 H N N 216 NMY H16 H N N 217 NMY H171 H N N 218 NMY H172 H N N 219 NMY H21 H N N 220 NMY H20 H N N 221 NMY H19 H N N 222 NMY H18 H N N 223 NMY H22 H N N 224 NMY H231 H N N 225 NMY H232 H N N 226 NMY HN61 H N N 227 NMY HN62 H N N 228 NMY HO41 H N N 229 NMY HO22 H N N 230 NMY HO21 H N N 231 NMY H17 H N N 232 NMY HO12 H N N 233 NMY H191 H N N 234 NMY H192 H N N 235 NMY HN31 H N N 236 NMY HN32 H N N 237 SO4 S S N N 238 SO4 O1 O N N 239 SO4 O2 O N N 240 SO4 O3 O N N 241 SO4 O4 O N N 242 U OP3 O N N 243 U P P N N 244 U OP1 O N N 245 U OP2 O N N 246 U "O5'" O N N 247 U "C5'" C N N 248 U "C4'" C N R 249 U "O4'" O N N 250 U "C3'" C N S 251 U "O3'" O N N 252 U "C2'" C N R 253 U "O2'" O N N 254 U "C1'" C N R 255 U N1 N N N 256 U C2 C N N 257 U O2 O N N 258 U N3 N N N 259 U C4 C N N 260 U O4 O N N 261 U C5 C N N 262 U C6 C N N 263 U HOP3 H N N 264 U HOP2 H N N 265 U "H5'" H N N 266 U "H5''" H N N 267 U "H4'" H N N 268 U "H3'" H N N 269 U "HO3'" H N N 270 U "H2'" H N N 271 U "HO2'" H N N 272 U "H1'" H N N 273 U H3 H N N 274 U H5 H N N 275 U H6 H N N 276 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5BU P OP1 doub N N 1 5BU P OP2 sing N N 2 5BU P OP3 sing N N 3 5BU P "O5'" sing N N 4 5BU OP2 HOP2 sing N N 5 5BU OP3 HOP3 sing N N 6 5BU "O5'" "C5'" sing N N 7 5BU "C5'" "C4'" sing N N 8 5BU "C5'" "H5'" sing N N 9 5BU "C5'" "H5''" sing N N 10 5BU "C4'" "O4'" sing N N 11 5BU "C4'" "C3'" sing N N 12 5BU "C4'" "H4'" sing N N 13 5BU "O4'" "C1'" sing N N 14 5BU "C3'" "O3'" sing N N 15 5BU "C3'" "C2'" sing N N 16 5BU "C3'" "H3'" sing N N 17 5BU "O3'" "HO3'" sing N N 18 5BU "C2'" "O2'" sing N N 19 5BU "C2'" "C1'" sing N N 20 5BU "C2'" "H2'" sing N N 21 5BU "O2'" "HO2'" sing N N 22 5BU "C1'" N1 sing N N 23 5BU "C1'" "H1'" sing N N 24 5BU N1 C2 sing N N 25 5BU N1 C6 sing N N 26 5BU C2 O2 doub N N 27 5BU C2 N3 sing N N 28 5BU N3 C4 sing N N 29 5BU N3 H3 sing N N 30 5BU C4 O4 doub N N 31 5BU C4 C5 sing N N 32 5BU C5 C6 doub N N 33 5BU C5 BR sing N N 34 5BU C6 H6 sing N N 35 A OP3 P sing N N 36 A OP3 HOP3 sing N N 37 A P OP1 doub N N 38 A P OP2 sing N N 39 A P "O5'" sing N N 40 A OP2 HOP2 sing N N 41 A "O5'" "C5'" sing N N 42 A "C5'" "C4'" sing N N 43 A "C5'" "H5'" sing N N 44 A "C5'" "H5''" sing N N 45 A "C4'" "O4'" sing N N 46 A "C4'" "C3'" sing N N 47 A "C4'" "H4'" sing N N 48 A "O4'" "C1'" sing N N 49 A "C3'" "O3'" sing N N 50 A "C3'" "C2'" sing N N 51 A "C3'" "H3'" sing N N 52 A "O3'" "HO3'" sing N N 53 A "C2'" "O2'" sing N N 54 A "C2'" "C1'" sing N N 55 A "C2'" "H2'" sing N N 56 A "O2'" "HO2'" sing N N 57 A "C1'" N9 sing N N 58 A "C1'" "H1'" sing N N 59 A N9 C8 sing Y N 60 A N9 C4 sing Y N 61 A C8 N7 doub Y N 62 A C8 H8 sing N N 63 A N7 C5 sing Y N 64 A C5 C6 sing Y N 65 A C5 C4 doub Y N 66 A C6 N6 sing N N 67 A C6 N1 doub Y N 68 A N6 H61 sing N N 69 A N6 H62 sing N N 70 A N1 C2 sing Y N 71 A C2 N3 doub Y N 72 A C2 H2 sing N N 73 A N3 C4 sing Y N 74 C OP3 P sing N N 75 C OP3 HOP3 sing N N 76 C P OP1 doub N N 77 C P OP2 sing N N 78 C P "O5'" sing N N 79 C OP2 HOP2 sing N N 80 C "O5'" "C5'" sing N N 81 C "C5'" "C4'" sing N N 82 C "C5'" "H5'" sing N N 83 C "C5'" "H5''" sing N N 84 C "C4'" "O4'" sing N N 85 C "C4'" "C3'" sing N N 86 C "C4'" "H4'" sing N N 87 C "O4'" "C1'" sing N N 88 C "C3'" "O3'" sing N N 89 C "C3'" "C2'" sing N N 90 C "C3'" "H3'" sing N N 91 C "O3'" "HO3'" sing N N 92 C "C2'" "O2'" sing N N 93 C "C2'" "C1'" sing N N 94 C "C2'" "H2'" sing N N 95 C "O2'" "HO2'" sing N N 96 C "C1'" N1 sing N N 97 C "C1'" "H1'" sing N N 98 C N1 C2 sing N N 99 C N1 C6 sing N N 100 C C2 O2 doub N N 101 C C2 N3 sing N N 102 C N3 C4 doub N N 103 C C4 N4 sing N N 104 C C4 C5 sing N N 105 C N4 H41 sing N N 106 C N4 H42 sing N N 107 C C5 C6 doub N N 108 C C5 H5 sing N N 109 C C6 H6 sing N N 110 G OP3 P sing N N 111 G OP3 HOP3 sing N N 112 G P OP1 doub N N 113 G P OP2 sing N N 114 G P "O5'" sing N N 115 G OP2 HOP2 sing N N 116 G "O5'" "C5'" sing N N 117 G "C5'" "C4'" sing N N 118 G "C5'" "H5'" sing N N 119 G "C5'" "H5''" sing N N 120 G "C4'" "O4'" sing N N 121 G "C4'" "C3'" sing N N 122 G "C4'" "H4'" sing N N 123 G "O4'" "C1'" sing N N 124 G "C3'" "O3'" sing N N 125 G "C3'" "C2'" sing N N 126 G "C3'" "H3'" sing N N 127 G "O3'" "HO3'" sing N N 128 G "C2'" "O2'" sing N N 129 G "C2'" "C1'" sing N N 130 G "C2'" "H2'" sing N N 131 G "O2'" "HO2'" sing N N 132 G "C1'" N9 sing N N 133 G "C1'" "H1'" sing N N 134 G N9 C8 sing Y N 135 G N9 C4 sing Y N 136 G C8 N7 doub Y N 137 G C8 H8 sing N N 138 G N7 C5 sing Y N 139 G C5 C6 sing N N 140 G C5 C4 doub Y N 141 G C6 O6 doub N N 142 G C6 N1 sing N N 143 G N1 C2 sing N N 144 G N1 H1 sing N N 145 G C2 N2 sing N N 146 G C2 N3 doub N N 147 G N2 H21 sing N N 148 G N2 H22 sing N N 149 G N3 C4 sing N N 150 HOH O H1 sing N N 151 HOH O H2 sing N N 152 NMY C1 O5 sing N N 153 NMY C1 O1 sing N N 154 NMY C1 C2 sing N N 155 NMY C1 H1 sing N N 156 NMY O1 C10 sing N N 157 NMY C2 N2 sing N N 158 NMY C2 C3 sing N N 159 NMY C2 H2 sing N N 160 NMY N2 HN21 sing N N 161 NMY N2 HN22 sing N N 162 NMY C3 C4 sing N N 163 NMY C3 O3 sing N N 164 NMY C3 H3 sing N N 165 NMY O3 HO3 sing N N 166 NMY C4 C5 sing N N 167 NMY C4 O4 sing N N 168 NMY C4 H4 sing N N 169 NMY O4 HO4 sing N N 170 NMY C5 O5 sing N N 171 NMY C5 C6 sing N N 172 NMY C5 H5 sing N N 173 NMY C6 N6 sing N N 174 NMY C6 H61 sing N N 175 NMY C6 H62 sing N N 176 NMY C7 N7 sing N N 177 NMY C7 C12 sing N N 178 NMY C7 C8 sing N N 179 NMY C7 H7 sing N N 180 NMY N7 H71 sing N N 181 NMY N7 H72 sing N N 182 NMY C12 O12 sing N N 183 NMY C12 C11 sing N N 184 NMY C12 H12 sing N N 185 NMY C11 O11 sing N N 186 NMY C11 C10 sing N N 187 NMY C11 H11 sing N N 188 NMY O11 C13 sing N N 189 NMY C10 C9 sing N N 190 NMY C10 H10 sing N N 191 NMY C9 C8 sing N N 192 NMY C9 N9 sing N N 193 NMY C9 H9 sing N N 194 NMY N9 H91 sing N N 195 NMY N9 H92 sing N N 196 NMY C8 H81 sing N N 197 NMY C8 H82 sing N N 198 NMY C13 C14 sing N N 199 NMY C13 O16 sing N N 200 NMY C13 H13 sing N N 201 NMY C14 O14 sing N N 202 NMY C14 C15 sing N N 203 NMY C14 H14 sing N N 204 NMY C15 O18 sing N N 205 NMY C15 C16 sing N N 206 NMY C15 H15 sing N N 207 NMY C16 O16 sing N N 208 NMY C16 C17 sing N N 209 NMY C16 H16 sing N N 210 NMY C17 O17 sing N N 211 NMY C17 H171 sing N N 212 NMY C17 H172 sing N N 213 NMY C21 C20 sing N N 214 NMY C21 C22 sing N N 215 NMY C21 O21 sing N N 216 NMY C21 H21 sing N N 217 NMY C20 C19 sing N N 218 NMY C20 O20 sing N N 219 NMY C20 H20 sing N N 220 NMY C19 N23 sing N N 221 NMY C19 C18 sing N N 222 NMY C19 H19 sing N N 223 NMY C18 O22 sing N N 224 NMY C18 O18 sing N N 225 NMY C18 H18 sing N N 226 NMY C22 O22 sing N N 227 NMY C22 C23 sing N N 228 NMY C22 H22 sing N N 229 NMY C23 N19 sing N N 230 NMY C23 H231 sing N N 231 NMY C23 H232 sing N N 232 NMY N6 HN61 sing N N 233 NMY N6 HN62 sing N N 234 NMY O14 HO41 sing N N 235 NMY O20 HO22 sing N N 236 NMY O21 HO21 sing N N 237 NMY O17 H17 sing N N 238 NMY O12 HO12 sing N N 239 NMY N19 H191 sing N N 240 NMY N19 H192 sing N N 241 NMY N23 HN31 sing N N 242 NMY N23 HN32 sing N N 243 SO4 S O1 doub N N 244 SO4 S O2 doub N N 245 SO4 S O3 sing N N 246 SO4 S O4 sing N N 247 U OP3 P sing N N 248 U OP3 HOP3 sing N N 249 U P OP1 doub N N 250 U P OP2 sing N N 251 U P "O5'" sing N N 252 U OP2 HOP2 sing N N 253 U "O5'" "C5'" sing N N 254 U "C5'" "C4'" sing N N 255 U "C5'" "H5'" sing N N 256 U "C5'" "H5''" sing N N 257 U "C4'" "O4'" sing N N 258 U "C4'" "C3'" sing N N 259 U "C4'" "H4'" sing N N 260 U "O4'" "C1'" sing N N 261 U "C3'" "O3'" sing N N 262 U "C3'" "C2'" sing N N 263 U "C3'" "H3'" sing N N 264 U "O3'" "HO3'" sing N N 265 U "C2'" "O2'" sing N N 266 U "C2'" "C1'" sing N N 267 U "C2'" "H2'" sing N N 268 U "O2'" "HO2'" sing N N 269 U "C1'" N1 sing N N 270 U "C1'" "H1'" sing N N 271 U N1 C2 sing N N 272 U N1 C6 sing N N 273 U C2 O2 doub N N 274 U C2 N3 sing N N 275 U N3 C4 sing N N 276 U N3 H3 sing N N 277 U C4 O4 doub N N 278 U C4 C5 sing N N 279 U C5 C6 doub N N 280 U C5 H5 sing N N 281 U C6 H6 sing N N 282 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2FCY 'double helix' 2FCY 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 A G 23 1_555 0.024 -0.139 0.047 3.378 -18.979 1.583 1 A_C1:G23_A A 1 ? A 23 ? 19 1 1 A U 2 1_555 A A 22 1_555 -0.097 -0.352 0.202 0.148 -17.490 0.204 2 A_U2:A22_A A 2 ? A 22 ? 20 1 1 A 5BU 3 1_555 A A 21 1_555 0.076 -0.071 0.206 -5.245 -19.251 6.127 3 A_5BU3:A21_A A 3 ? A 21 ? 20 1 1 A G 4 1_555 A C 20 1_555 -0.035 -0.135 -0.086 -2.973 -17.855 -0.544 4 A_G4:C20_A A 4 ? A 20 ? 19 1 1 A C 5 1_555 A G 19 1_555 0.136 -0.315 0.235 -1.043 -18.568 -1.698 5 A_C5:G19_A A 5 ? A 19 ? 19 1 1 A U 6 1_555 A A 18 1_555 -0.369 -0.227 0.525 -5.227 -13.179 0.534 6 A_U6:A18_A A 6 ? A 18 ? 20 1 1 A G 7 1_555 A C 17 1_555 -0.116 -0.360 0.107 -6.586 -22.130 -0.471 7 A_G7:C17_A A 7 ? A 17 ? 19 1 1 B C 1 1_555 B G 23 1_555 -0.063 -0.184 0.014 11.971 -17.095 -1.426 8 B_C1:G23_B B 1 ? B 23 ? 19 1 1 B U 2 1_555 B A 22 1_555 -0.055 -0.089 0.057 5.033 -15.078 1.574 9 B_U2:A22_B B 2 ? B 22 ? 20 1 1 B 5BU 3 1_555 B A 21 1_555 0.329 -0.151 0.117 -1.898 -12.094 1.393 10 B_5BU3:A21_B B 3 ? B 21 ? 20 1 1 B G 4 1_555 B C 20 1_555 -0.020 -0.068 0.313 0.152 -13.109 1.216 11 B_G4:C20_B B 4 ? B 20 ? 19 1 1 B C 5 1_555 B G 19 1_555 0.226 -0.369 0.035 0.518 -16.406 -1.400 12 B_C5:G19_B B 5 ? B 19 ? 19 1 1 B U 6 1_555 B A 18 1_555 -0.250 -0.110 0.348 3.482 -11.440 0.823 13 B_U6:A18_B B 6 ? B 18 ? 20 1 1 B G 7 1_555 B C 17 1_555 0.080 -0.209 0.099 -9.432 -25.767 0.675 14 B_G7:C17_B B 7 ? B 17 ? 19 1 1 A G 10 1_555 B C 15 1_555 -0.341 -0.195 0.057 -1.068 -5.572 -0.094 15 A_G10:C15_B A 10 ? B 15 ? 19 1 1 A U 11 1_555 B A 14 1_555 -0.296 -0.170 0.100 -4.331 -7.664 -3.549 16 A_U11:A14_B A 11 ? B 14 ? 20 1 1 A G 12 1_555 B C 13 1_555 -0.259 -0.065 0.303 0.875 -9.883 4.367 17 A_G12:C13_B A 12 ? B 13 ? 19 1 1 A C 13 1_555 B G 12 1_555 0.181 -0.077 0.012 1.422 -7.055 3.365 18 A_C13:G12_B A 13 ? B 12 ? 19 1 1 A A 14 1_555 B U 11 1_555 0.060 -0.020 0.134 4.145 -4.131 3.356 19 A_A14:U11_B A 14 ? B 11 ? 20 1 1 A C 15 1_555 B G 10 1_555 0.113 -0.162 -0.087 1.351 -4.744 -2.604 20 A_C15:G10_B A 15 ? B 10 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 A G 23 1_555 A U 2 1_555 A A 22 1_555 -0.549 -1.395 3.298 -5.247 14.326 31.765 -4.315 0.175 2.514 24.486 8.968 35.154 1 AA_C1U2:A22G23_AA A 1 ? A 23 ? A 2 ? A 22 ? 1 A U 2 1_555 A A 22 1_555 A 5BU 3 1_555 A A 21 1_555 0.355 -0.902 3.346 1.678 10.883 35.714 -2.831 -0.336 2.968 17.247 -2.659 37.320 2 AA_U25BU3:A21A22_AA A 2 ? A 22 ? A 3 ? A 21 ? 1 A 5BU 3 1_555 A A 21 1_555 A G 4 1_555 A C 20 1_555 0.335 -1.465 3.091 1.228 11.526 28.863 -4.650 -0.422 2.358 22.035 -2.347 31.058 3 AA_5BU3G4:C20A21_AA A 3 ? A 21 ? A 4 ? A 20 ? 1 A G 4 1_555 A C 20 1_555 A C 5 1_555 A G 19 1_555 -0.359 -1.370 3.191 -2.164 3.370 34.019 -2.835 0.282 3.062 5.736 3.682 34.247 4 AA_G4C5:G19C20_AA A 4 ? A 20 ? A 5 ? A 19 ? 1 A C 5 1_555 A G 19 1_555 A U 6 1_555 A A 18 1_555 0.520 -1.184 3.251 -0.728 7.508 31.025 -3.452 -1.073 2.880 13.782 1.337 31.907 5 AA_C5U6:A18G19_AA A 5 ? A 19 ? A 6 ? A 18 ? 1 A U 6 1_555 A A 18 1_555 A G 7 1_555 A C 17 1_555 0.055 -1.536 3.174 2.434 10.655 35.763 -3.675 0.206 2.623 16.871 -3.855 37.343 6 AA_U6G7:C17A18_AA A 6 ? A 18 ? A 7 ? A 17 ? 1 B C 1 1_555 B G 23 1_555 B U 2 1_555 B A 22 1_555 0.130 -1.627 3.441 -2.259 8.751 34.848 -3.873 -0.530 2.946 14.316 3.696 35.966 7 BB_C1U2:A22G23_BB B 1 ? B 23 ? B 2 ? B 22 ? 1 B U 2 1_555 B A 22 1_555 B 5BU 3 1_555 B A 21 1_555 -0.345 -2.051 3.360 -1.594 6.624 33.083 -4.574 0.344 2.920 11.481 2.762 33.758 8 BB_U25BU3:A21A22_BB B 2 ? B 22 ? B 3 ? B 21 ? 1 B 5BU 3 1_555 B A 21 1_555 B G 4 1_555 B C 20 1_555 -0.174 -1.677 3.031 -3.064 9.259 33.423 -4.024 -0.112 2.498 15.688 5.191 34.778 9 BB_5BU3G4:C20A21_BB B 3 ? B 21 ? B 4 ? B 20 ? 1 B G 4 1_555 B C 20 1_555 B C 5 1_555 B G 19 1_555 -0.498 -1.289 3.268 2.606 3.628 32.440 -2.896 1.320 3.062 6.455 -4.637 32.738 10 BB_G4C5:G19C20_BB B 4 ? B 20 ? B 5 ? B 19 ? 1 B C 5 1_555 B G 19 1_555 B U 6 1_555 B A 18 1_555 0.725 -1.536 3.087 -0.439 8.016 28.949 -4.417 -1.480 2.567 15.658 0.858 30.018 11 BB_C5U6:A18G19_BB B 5 ? B 19 ? B 6 ? B 18 ? 1 B U 6 1_555 B A 18 1_555 B G 7 1_555 B C 17 1_555 0.248 -1.327 3.505 4.749 12.157 37.441 -3.412 0.201 2.959 18.273 -7.137 39.573 12 BB_U6G7:C17A18_BB B 6 ? B 18 ? B 7 ? B 17 ? 1 B G 7 1_555 B C 17 1_555 A G 10 1_555 B C 15 1_555 -1.603 -3.855 6.185 7.304 17.960 78.287 -3.828 1.584 5.211 14.027 -5.705 80.276 13 BA_G7G10:C15C17_BB B 7 ? B 17 ? A 10 ? B 15 ? 1 A G 10 1_555 B C 15 1_555 A U 11 1_555 B A 14 1_555 -0.542 -2.601 3.379 -1.958 0.632 29.429 -5.247 0.634 3.351 1.243 3.849 29.500 14 AA_G10U11:A14C15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A U 11 1_555 B A 14 1_555 A G 12 1_555 B C 13 1_555 0.142 -1.767 2.932 0.073 7.368 31.863 -4.208 -0.242 2.473 13.201 -0.130 32.682 15 AA_U11G12:C13A14_BB A 11 ? B 14 ? A 12 ? B 13 ? 1 A G 12 1_555 B C 13 1_555 A C 13 1_555 B G 12 1_555 -0.184 -1.195 3.282 3.033 10.639 33.013 -3.539 0.747 2.750 18.101 -5.161 34.769 16 AA_G12C13:G12C13_BB A 12 ? B 13 ? A 13 ? B 12 ? 1 A C 13 1_555 B G 12 1_555 A A 14 1_555 B U 11 1_555 0.932 -1.967 3.088 -0.738 10.358 26.392 -6.008 -2.046 2.151 21.650 1.543 28.328 17 AA_C13A14:U11G12_BB A 13 ? B 12 ? A 14 ? B 11 ? 1 A A 14 1_555 B U 11 1_555 A C 15 1_555 B G 10 1_555 0.138 -2.501 3.390 1.312 2.111 28.738 -5.496 0.018 3.205 4.243 -2.638 28.843 18 AA_A14C15:G10U11_BB A 14 ? B 11 ? A 15 ? B 10 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 NEOMYCIN NMY 3 'POTASSIUM ION' K 4 'CHLORIDE ION' CL 5 'SULFATE ION' SO4 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2FCX _pdbx_initial_refinement_model.details ? #