HEADER LIGASE 20-DEC-05 2FFW TITLE SOLUTION STRUCTURE OF THE RBCC/TRIM B-BOX1 DOMAIN OF HUMAN MID1: B-BOX TITLE 2 WITH A RING COMPND MOL_ID: 1; COMPND 2 MOLECULE: MIDLINE-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: B-BOX 1 DOMAIN (RESIDUES: 87 - 164); COMPND 5 SYNONYM: TRIPARTITE MOTIF PROTEIN 18, PUTATIVE TRANSCRIPTION FACTOR COMPND 6 XPRF, MIDIN, RING FINGER PROTEIN 59; COMPND 7 EC: 6.3.2.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MID1, FXY, RNF59, TRIM18, XPRF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-4T2 KEYWDS B-BOX, MID1, RING FINGER, ZINC-FINGER, LIGASE EXPDTA SOLUTION NMR NUMMDL 13 AUTHOR M.A.MASSIAH,B.N.SIMMONS,K.M.SHORT,T.C.COX REVDAT 3 09-MAR-22 2FFW 1 REMARK LINK REVDAT 2 24-FEB-09 2FFW 1 VERSN REVDAT 1 09-MAY-06 2FFW 0 JRNL AUTH M.A.MASSIAH,B.N.SIMMONS,K.M.SHORT,T.C.COX JRNL TITL SOLUTION STRUCTURE OF THE RBCC/TRIM B-BOX1 DOMAIN OF HUMAN JRNL TITL 2 MID1: B-BOX WITH A RING. JRNL REF J.MOL.BIOL. V. 358 532 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16529770 JRNL DOI 10.1016/J.JMB.2006.02.009 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, CYANA 2.1 REMARK 3 AUTHORS : P GUNTERT (CYANA), P GUNTERT (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2FFW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1000035830. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 294 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 300 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.75 MM U-15N,13C PROTEIN; 50 MM REMARK 210 TRIS-HCL, 300 MM NACL, 50 MM REMARK 210 BETA-MERCAPTOETHANOL, 5 MM ZNCL2, REMARK 210 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HNCA; HNCACB; CBCACONH; 3D_15N REMARK 210 -SEPARATED_ROESY; 3D_13C- REMARK 210 SEPARATED_NOESY; HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY SPARKY-MAC10.2 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 13 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: STRUCTURE WAS DETERMINED USING TRIPLE RESONANCE DATA FOR REMARK 210 BACKBONE ATOM ASSIGNMENT AND NOES FROM 13C- AND 15N-EDITED NOESY REMARK 210 SPECTRA REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 96 69.99 -157.62 REMARK 500 1 SER A 98 98.52 -65.61 REMARK 500 1 GLU A 103 104.55 -162.67 REMARK 500 1 PHE A 106 76.05 -154.95 REMARK 500 1 ALA A 108 -178.43 -63.11 REMARK 500 1 SER A 113 -66.34 -161.42 REMARK 500 1 GLU A 115 -68.14 -130.25 REMARK 500 1 LYS A 116 -173.57 63.08 REMARK 500 1 ASP A 123 26.81 -147.55 REMARK 500 1 ASP A 125 85.53 60.43 REMARK 500 1 CYS A 142 -159.24 -101.57 REMARK 500 1 HIS A 150 72.95 -113.50 REMARK 500 1 PRO A 151 85.03 -69.77 REMARK 500 1 LYS A 154 161.32 62.68 REMARK 500 1 PHE A 156 43.37 -162.01 REMARK 500 1 THR A 157 46.84 -90.24 REMARK 500 2 LYS A 88 -171.76 60.75 REMARK 500 2 SER A 92 91.43 -163.88 REMARK 500 2 PRO A 97 87.84 -69.82 REMARK 500 2 GLU A 103 97.11 59.95 REMARK 500 2 ASP A 107 -174.02 -60.76 REMARK 500 2 ALA A 114 88.11 63.57 REMARK 500 2 GLU A 115 -67.79 -130.41 REMARK 500 2 ASP A 123 27.22 -148.53 REMARK 500 2 ASP A 125 85.70 61.66 REMARK 500 2 CYS A 142 -160.45 -104.10 REMARK 500 2 HIS A 150 72.56 -113.71 REMARK 500 2 LYS A 154 161.42 62.60 REMARK 500 2 PHE A 156 66.67 -161.61 REMARK 500 2 THR A 157 40.60 -96.06 REMARK 500 3 SER A 98 -70.70 -95.70 REMARK 500 3 ARG A 104 147.08 -174.86 REMARK 500 3 ALA A 105 -68.44 -142.97 REMARK 500 3 ALA A 108 162.98 62.88 REMARK 500 3 ASN A 109 62.69 -174.80 REMARK 500 3 THR A 110 158.47 64.13 REMARK 500 3 ALA A 114 176.71 62.00 REMARK 500 3 GLU A 115 -68.10 -121.20 REMARK 500 3 ASP A 123 26.52 -151.05 REMARK 500 3 ASP A 125 86.01 63.32 REMARK 500 3 CYS A 142 -159.26 -101.54 REMARK 500 3 HIS A 150 72.74 -113.57 REMARK 500 3 ASN A 152 -174.47 179.75 REMARK 500 3 LYS A 154 161.14 62.59 REMARK 500 3 HIS A 159 -169.13 -78.74 REMARK 500 4 ASN A 95 -171.91 -69.03 REMARK 500 4 ASN A 109 100.84 -59.81 REMARK 500 4 SER A 113 -172.81 -60.45 REMARK 500 4 GLU A 115 -68.20 -96.77 REMARK 500 4 ASP A 123 26.26 -140.12 REMARK 500 REMARK 500 THIS ENTRY HAS 182 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 119 SG REMARK 620 2 CYS A 122 SG 110.6 REMARK 620 3 CYS A 142 SG 112.1 108.7 REMARK 620 4 CYS A 145 SG 109.8 107.6 107.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 134 SG REMARK 620 2 CYS A 137 SG 107.6 REMARK 620 3 HIS A 150 NE2 118.8 113.4 REMARK 620 4 HIS A 159 ND1 117.9 112.8 85.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 DBREF 2FFW A 87 164 UNP O15344 TRI18_HUMAN 87 164 SEQRES 1 A 78 GLN LYS ALA SER VAL SER GLY PRO ASN SER PRO SER GLU SEQRES 2 A 78 THR ARG ARG GLU ARG ALA PHE ASP ALA ASN THR MET THR SEQRES 3 A 78 SER ALA GLU LYS VAL LEU CYS GLN PHE CYS ASP GLN ASP SEQRES 4 A 78 PRO ALA GLN ASP ALA VAL LYS THR CYS VAL THR CYS GLU SEQRES 5 A 78 VAL SER TYR CYS ASP GLU CYS LEU LYS ALA THR HIS PRO SEQRES 6 A 78 ASN LYS LYS PRO PHE THR GLY HIS ARG LEU ILE GLU PRO HET ZN A 200 1 HET ZN A 201 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 CYS A 142 HIS A 150 1 9 SHEET 1 A 2 LYS A 132 CYS A 134 0 SHEET 2 A 2 VAL A 139 TYR A 141 -1 O TYR A 141 N LYS A 132 LINK SG CYS A 119 ZN ZN A 200 1555 1555 2.30 LINK SG CYS A 122 ZN ZN A 200 1555 1555 2.38 LINK SG CYS A 134 ZN ZN A 201 1555 1555 2.30 LINK SG CYS A 137 ZN ZN A 201 1555 1555 2.44 LINK SG CYS A 142 ZN ZN A 200 1555 1555 2.36 LINK SG CYS A 145 ZN ZN A 200 1555 1555 2.39 LINK NE2 HIS A 150 ZN ZN A 201 1555 1555 2.14 LINK ND1 HIS A 159 ZN ZN A 201 1555 1555 2.14 CISPEP 1 ASP A 125 PRO A 126 1 0.03 CISPEP 2 LYS A 154 PRO A 155 1 -0.06 CISPEP 3 ASP A 125 PRO A 126 2 0.01 CISPEP 4 LYS A 154 PRO A 155 2 -0.09 CISPEP 5 ASP A 125 PRO A 126 3 0.14 CISPEP 6 LYS A 154 PRO A 155 3 -0.05 CISPEP 7 ASP A 125 PRO A 126 4 -0.03 CISPEP 8 LYS A 154 PRO A 155 4 -0.15 CISPEP 9 ASP A 125 PRO A 126 5 -0.07 CISPEP 10 LYS A 154 PRO A 155 5 0.10 CISPEP 11 ASP A 125 PRO A 126 6 -0.01 CISPEP 12 LYS A 154 PRO A 155 6 -0.16 CISPEP 13 ASP A 125 PRO A 126 7 0.13 CISPEP 14 LYS A 154 PRO A 155 7 0.00 CISPEP 15 ASP A 125 PRO A 126 8 0.07 CISPEP 16 LYS A 154 PRO A 155 8 -0.14 CISPEP 17 ASP A 125 PRO A 126 9 0.00 CISPEP 18 LYS A 154 PRO A 155 9 -0.12 CISPEP 19 ASP A 125 PRO A 126 10 0.04 CISPEP 20 LYS A 154 PRO A 155 10 -0.15 CISPEP 21 ASP A 125 PRO A 126 11 -0.02 CISPEP 22 LYS A 154 PRO A 155 11 -0.12 CISPEP 23 ASP A 125 PRO A 126 12 0.05 CISPEP 24 LYS A 154 PRO A 155 12 -0.14 CISPEP 25 ASP A 125 PRO A 126 13 -0.04 CISPEP 26 LYS A 154 PRO A 155 13 -0.10 SITE 1 AC1 4 CYS A 119 CYS A 122 CYS A 142 CYS A 145 SITE 1 AC2 4 CYS A 134 CYS A 137 HIS A 150 HIS A 159 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1