HEADER COMPLEX (METHYLTRANSFERASE/TRNA) 29-JUL-98 2FMT TITLE METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL- TITLE 2 TRNAFMET COMPND MOL_ID: 1; COMPND 2 MOLECULE: FORMYL-METHIONYL-TRNAFMET2; COMPND 3 CHAIN: C, D; COMPND 4 SYNONYM: INITIATOR TRNA; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: METHIONYL-TRNA FMET FORMYLTRANSFERASE; COMPND 8 CHAIN: A, B; COMPND 9 SYNONYM: 10-FORMYLTETRAHYDROFOLATE L-METHIONYL TRNAFMET COMPND 10 FORMYLTRANSFERASE; COMPND 11 EC: 2.1.2.9; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 7 ORGANISM_TAXID: 562; SOURCE 8 STRAIN: K37; SOURCE 9 CELLULAR_LOCATION: CYTOPLASM; SOURCE 10 GENE: FMT; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: JM101TR; SOURCE 14 EXPRESSION_SYSTEM_CELLULAR_LOCATION: CYTOPLASM; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_VECTOR: PUC18; SOURCE 17 EXPRESSION_SYSTEM_PLASMID: PUCFATG KEYWDS COMPLEX (METHYLTRANSFERASE-TRNA), FORMYLTRANSFERASE, INITIATION OF KEYWDS 2 TRANSLATION, COMPLEX (METHYLTRANSFERASE-TRNA) COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.SCHMITT,Y.MECHULAM,S.BLANQUET REVDAT 4 02-AUG-23 2FMT 1 REMARK LINK REVDAT 3 19-FEB-20 2FMT 1 SOURCE REMARK LINK REVDAT 2 24-FEB-09 2FMT 1 VERSN REVDAT 1 29-JUL-99 2FMT 0 JRNL AUTH E.SCHMITT,M.PANVERT,S.BLANQUET,Y.MECHULAM JRNL TITL CRYSTAL STRUCTURE OF METHIONYL-TRNAFMET TRANSFORMYLASE JRNL TITL 2 COMPLEXED WITH THE INITIATOR FORMYL-METHIONYL-TRNAFMET. JRNL REF EMBO J. V. 17 6819 1998 JRNL REFN ISSN 0261-4189 JRNL PMID 9843487 JRNL DOI 10.1093/EMBOJ/17.23.6819 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.3C REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 87.2 REMARK 3 NUMBER OF REFLECTIONS : 26136 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1528 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.93 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 63.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2171 REMARK 3 BIN R VALUE (WORKING SET) : 0.3620 REMARK 3 BIN FREE R VALUE : 0.4280 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 135 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4784 REMARK 3 NUCLEIC ACID ATOMS : 3290 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 83 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 78.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -16.23000 REMARK 3 B22 (A**2) : -7.43000 REMARK 3 B33 (A**2) : 26.67000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.440 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 27.72 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.270 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.200 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.700 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.600 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.900 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.23 REMARK 3 BSOL : 15.10 REMARK 3 REMARK 3 NCS MODEL : RESTRAINTS REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : 0.15 ; 50 REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 GROUP 2 POSITIONAL (A) : 0.26 ; 50 REMARK 3 GROUP 2 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : PARAM11.WAT REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH11.WAT REMARK 3 TOPOLOGY FILE 3 : DNA-RNA-MULTI-ENDO.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE POSITIONS OF BASES 1, 16 - 18 AND 37 IN CHAINS C AND D REMARK 3 ARE TENTATIVE. REMARK 4 REMARK 4 2FMT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000178099. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LURE REMARK 200 BEAMLINE : DW32 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29912 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05100 REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.35100 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIR REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: PDB ENTRY 1FMT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 100.85500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.03000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 100.85500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.03000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICALLY ACTIVE COMPLEX CORRESPONDS TO EITHER REMARK 300 CHAINS A AND C, OR CHAINS B AND D. THE COORDINATES FOR REMARK 300 CHAINS A AND C ARE MORE ACCURATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3' A D 76 O FME D 586 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 C C 1 P C C 1 OP3 -0.084 REMARK 500 A C 76 O3' A C 76 C3' 0.073 REMARK 500 C D 1 P C D 1 OP3 -0.089 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G C 2 O3' - P - OP1 ANGL. DEV. = 8.1 DEGREES REMARK 500 G D 2 O3' - P - OP2 ANGL. DEV. = 9.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 11 -61.27 -128.18 REMARK 500 ALA A 40 106.21 -161.76 REMARK 500 ARG A 42 96.83 69.34 REMARK 500 PRO A 48 -159.20 -68.97 REMARK 500 LYS A 58 0.73 -63.38 REMARK 500 GLN A 64 55.86 -118.57 REMARK 500 GLN A 81 75.86 34.31 REMARK 500 LEU A 114 165.39 -48.73 REMARK 500 THR A 134 -161.66 -160.14 REMARK 500 ASP A 142 -160.28 -111.25 REMARK 500 THR A 159 -170.94 -66.13 REMARK 500 THR A 163 -160.61 -105.84 REMARK 500 MET A 235 117.09 90.71 REMARK 500 THR A 255 103.49 -161.66 REMARK 500 ALA A 267 79.49 -164.20 REMARK 500 ASP A 278 109.86 -165.74 REMARK 500 ALA A 289 125.35 -33.65 REMARK 500 LYS A 291 -165.28 -119.08 REMARK 500 ASN A 301 10.45 -68.56 REMARK 500 SER A 302 -2.91 -160.08 REMARK 500 ARG A 303 40.32 -142.23 REMARK 500 SER B 3 109.39 -57.58 REMARK 500 THR B 11 -61.34 -127.30 REMARK 500 THR B 34 -160.76 -129.45 REMARK 500 ASP B 37 155.55 -43.73 REMARK 500 ALA B 40 115.66 -163.71 REMARK 500 ARG B 42 100.43 56.77 REMARK 500 GLN B 64 54.12 -116.31 REMARK 500 GLN B 81 78.58 31.35 REMARK 500 LEU B 114 166.30 -47.41 REMARK 500 ILE B 123 -70.38 -70.09 REMARK 500 THR B 134 -169.23 -160.62 REMARK 500 ASP B 142 -157.35 -113.25 REMARK 500 ASP B 146 45.42 39.03 REMARK 500 THR B 159 -169.50 -67.11 REMARK 500 THR B 163 -159.65 -108.44 REMARK 500 GLU B 198 -18.93 -45.34 REMARK 500 ARG B 213 135.50 -35.61 REMARK 500 ILE B 227 -19.04 -49.69 REMARK 500 MET B 235 107.69 90.50 REMARK 500 GLU B 241 45.31 71.79 REMARK 500 ASP B 254 76.41 -103.75 REMARK 500 THR B 255 69.88 -152.52 REMARK 500 ALA B 256 148.11 -22.89 REMARK 500 ALA B 267 75.94 -159.12 REMARK 500 THR B 276 -166.18 -118.15 REMARK 500 ASP B 278 144.42 -171.50 REMARK 500 ALA B 289 128.94 -39.18 REMARK 500 SER B 302 -8.31 -162.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 U D 24 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 584 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FME C 585 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 585 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FME D 586 DBREF 2FMT A 1 314 UNP P23882 FMT_ECOLI 1 314 DBREF 2FMT B 1 314 UNP P23882 FMT_ECOLI 1 314 DBREF 2FMT C 1 76 PDB 2FMT 2FMT 1 76 DBREF 2FMT D 1 76 PDB 2FMT 2FMT 1 76 SEQRES 1 C 77 C G C G G G G 4SU G G A G C SEQRES 2 C 77 A G C C U G G H2U A G C U C SEQRES 3 C 77 G U C G G G OMC U C A U A A SEQRES 4 C 77 C C C G A A G A U C G U C SEQRES 5 C 77 G G 5MU PSU C A A A U C C G G SEQRES 6 C 77 C C C C C G C A A C C A SEQRES 1 D 77 C G C G G G G 4SU G G A G C SEQRES 2 D 77 A G C C U G G H2U A G C U C SEQRES 3 D 77 G U C G G G OMC U C A U A A SEQRES 4 D 77 C C C G A A G A U C G U C SEQRES 5 D 77 G G 5MU PSU C A A A U C C G G SEQRES 6 D 77 C C C C C G C A A C C A SEQRES 1 A 314 SER GLU SER LEU ARG ILE ILE PHE ALA GLY THR PRO ASP SEQRES 2 A 314 PHE ALA ALA ARG HIS LEU ASP ALA LEU LEU SER SER GLY SEQRES 3 A 314 HIS ASN VAL VAL GLY VAL PHE THR GLN PRO ASP ARG PRO SEQRES 4 A 314 ALA GLY ARG GLY LYS LYS LEU MET PRO SER PRO VAL LYS SEQRES 5 A 314 VAL LEU ALA GLU GLU LYS GLY LEU PRO VAL PHE GLN PRO SEQRES 6 A 314 VAL SER LEU ARG PRO GLN GLU ASN GLN GLN LEU VAL ALA SEQRES 7 A 314 GLU LEU GLN ALA ASP VAL MET VAL VAL VAL ALA TYR GLY SEQRES 8 A 314 LEU ILE LEU PRO LYS ALA VAL LEU GLU MET PRO ARG LEU SEQRES 9 A 314 GLY CYS ILE ASN VAL HIS GLY SER LEU LEU PRO ARG TRP SEQRES 10 A 314 ARG GLY ALA ALA PRO ILE GLN ARG SER LEU TRP ALA GLY SEQRES 11 A 314 ASP ALA GLU THR GLY VAL THR ILE MET GLN MET ASP VAL SEQRES 12 A 314 GLY LEU ASP THR GLY ASP MET LEU TYR LYS LEU SER CYS SEQRES 13 A 314 PRO ILE THR ALA GLU ASP THR SER GLY THR LEU TYR ASP SEQRES 14 A 314 LYS LEU ALA GLU LEU GLY PRO GLN GLY LEU ILE THR THR SEQRES 15 A 314 LEU LYS GLN LEU ALA ASP GLY THR ALA LYS PRO GLU VAL SEQRES 16 A 314 GLN ASP GLU THR LEU VAL THR TYR ALA GLU LYS LEU SER SEQRES 17 A 314 LYS GLU GLU ALA ARG ILE ASP TRP SER LEU SER ALA ALA SEQRES 18 A 314 GLN LEU GLU ARG CYS ILE ARG ALA PHE ASN PRO TRP PRO SEQRES 19 A 314 MET SER TRP LEU GLU ILE GLU GLY GLN PRO VAL LYS VAL SEQRES 20 A 314 TRP LYS ALA SER VAL ILE ASP THR ALA THR ASN ALA ALA SEQRES 21 A 314 PRO GLY THR ILE LEU GLU ALA ASN LYS GLN GLY ILE GLN SEQRES 22 A 314 VAL ALA THR GLY ASP GLY ILE LEU ASN LEU LEU SER LEU SEQRES 23 A 314 GLN PRO ALA GLY LYS LYS ALA MET SER ALA GLN ASP LEU SEQRES 24 A 314 LEU ASN SER ARG ARG GLU TRP PHE VAL PRO GLY ASN ARG SEQRES 25 A 314 LEU VAL SEQRES 1 B 314 SER GLU SER LEU ARG ILE ILE PHE ALA GLY THR PRO ASP SEQRES 2 B 314 PHE ALA ALA ARG HIS LEU ASP ALA LEU LEU SER SER GLY SEQRES 3 B 314 HIS ASN VAL VAL GLY VAL PHE THR GLN PRO ASP ARG PRO SEQRES 4 B 314 ALA GLY ARG GLY LYS LYS LEU MET PRO SER PRO VAL LYS SEQRES 5 B 314 VAL LEU ALA GLU GLU LYS GLY LEU PRO VAL PHE GLN PRO SEQRES 6 B 314 VAL SER LEU ARG PRO GLN GLU ASN GLN GLN LEU VAL ALA SEQRES 7 B 314 GLU LEU GLN ALA ASP VAL MET VAL VAL VAL ALA TYR GLY SEQRES 8 B 314 LEU ILE LEU PRO LYS ALA VAL LEU GLU MET PRO ARG LEU SEQRES 9 B 314 GLY CYS ILE ASN VAL HIS GLY SER LEU LEU PRO ARG TRP SEQRES 10 B 314 ARG GLY ALA ALA PRO ILE GLN ARG SER LEU TRP ALA GLY SEQRES 11 B 314 ASP ALA GLU THR GLY VAL THR ILE MET GLN MET ASP VAL SEQRES 12 B 314 GLY LEU ASP THR GLY ASP MET LEU TYR LYS LEU SER CYS SEQRES 13 B 314 PRO ILE THR ALA GLU ASP THR SER GLY THR LEU TYR ASP SEQRES 14 B 314 LYS LEU ALA GLU LEU GLY PRO GLN GLY LEU ILE THR THR SEQRES 15 B 314 LEU LYS GLN LEU ALA ASP GLY THR ALA LYS PRO GLU VAL SEQRES 16 B 314 GLN ASP GLU THR LEU VAL THR TYR ALA GLU LYS LEU SER SEQRES 17 B 314 LYS GLU GLU ALA ARG ILE ASP TRP SER LEU SER ALA ALA SEQRES 18 B 314 GLN LEU GLU ARG CYS ILE ARG ALA PHE ASN PRO TRP PRO SEQRES 19 B 314 MET SER TRP LEU GLU ILE GLU GLY GLN PRO VAL LYS VAL SEQRES 20 B 314 TRP LYS ALA SER VAL ILE ASP THR ALA THR ASN ALA ALA SEQRES 21 B 314 PRO GLY THR ILE LEU GLU ALA ASN LYS GLN GLY ILE GLN SEQRES 22 B 314 VAL ALA THR GLY ASP GLY ILE LEU ASN LEU LEU SER LEU SEQRES 23 B 314 GLN PRO ALA GLY LYS LYS ALA MET SER ALA GLN ASP LEU SEQRES 24 B 314 LEU ASN SER ARG ARG GLU TRP PHE VAL PRO GLY ASN ARG SEQRES 25 B 314 LEU VAL MODRES 2FMT 4SU C 8 U 4-THIOURIDINE-5'-MONOPHOSPHATE MODRES 2FMT H2U C 20 U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE MODRES 2FMT OMC C 32 C O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE MODRES 2FMT 5MU C 54 U 5-METHYLURIDINE 5'-MONOPHOSPHATE MODRES 2FMT PSU C 55 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 2FMT 4SU D 8 U 4-THIOURIDINE-5'-MONOPHOSPHATE MODRES 2FMT H2U D 20 U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE MODRES 2FMT OMC D 32 C O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE MODRES 2FMT 5MU D 54 U 5-METHYLURIDINE 5'-MONOPHOSPHATE MODRES 2FMT PSU D 55 U PSEUDOURIDINE-5'-MONOPHOSPHATE HET 4SU C 8 20 HET H2U C 20 20 HET OMC C 32 21 HET 5MU C 54 21 HET PSU C 55 20 HET 4SU D 8 20 HET H2U D 20 20 HET OMC D 32 21 HET 5MU D 54 21 HET PSU D 55 20 HET MG C 584 1 HET FME C 585 10 HET MG D 585 1 HET FME D 586 10 HETNAM 4SU 4-THIOURIDINE-5'-MONOPHOSPHATE HETNAM H2U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE HETNAM OMC O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE HETNAM 5MU 5-METHYLURIDINE 5'-MONOPHOSPHATE HETNAM PSU PSEUDOURIDINE-5'-MONOPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM FME N-FORMYLMETHIONINE FORMUL 1 4SU 2(C9 H13 N2 O8 P S) FORMUL 1 H2U 2(C9 H15 N2 O9 P) FORMUL 1 OMC 2(C10 H16 N3 O8 P) FORMUL 1 5MU 2(C10 H15 N2 O9 P) FORMUL 1 PSU 2(C9 H13 N2 O9 P) FORMUL 5 MG 2(MG 2+) FORMUL 6 FME 2(C6 H11 N O3 S) FORMUL 9 HOH *83(H2 O) HELIX 1 1 ASP A 13 SER A 24 1 12 HELIX 2 2 PRO A 50 LYS A 58 1 9 HELIX 3 3 GLN A 71 LEU A 80 1 10 HELIX 4 4 LYS A 96 MET A 101 1 6 HELIX 5 5 PRO A 122 TRP A 128 1 7 HELIX 6 6 SER A 164 ASP A 188 1 25 HELIX 7 7 GLU A 198 LEU A 200 5 3 HELIX 8 8 LYS A 209 ALA A 212 1 4 HELIX 9 9 ALA A 220 ALA A 229 1 10 HELIX 10 10 ALA A 296 PHE A 307 1 12 HELIX 11 11 ASP B 13 SER B 24 1 12 HELIX 12 12 PRO B 50 LYS B 58 1 9 HELIX 13 13 GLN B 71 LEU B 80 1 10 HELIX 14 14 LYS B 96 MET B 101 1 6 HELIX 15 15 PRO B 122 TRP B 128 1 7 HELIX 16 16 SER B 164 ASP B 188 1 25 HELIX 17 17 GLU B 198 LEU B 200 5 3 HELIX 18 18 LYS B 209 ALA B 212 1 4 HELIX 19 19 ALA B 220 ALA B 229 1 10 HELIX 20 20 ALA B 296 LEU B 300 1 5 HELIX 21 21 ARG B 304 PHE B 307 5 4 SHEET 1 A 6 MET A 150 PRO A 157 0 SHEET 2 A 6 GLU A 133 GLN A 140 -1 N ILE A 138 O LEU A 151 SHEET 3 A 6 CYS A 106 HIS A 110 -1 N HIS A 110 O THR A 137 SHEET 4 A 6 VAL A 84 VAL A 88 1 N MET A 85 O ILE A 107 SHEET 5 A 6 ARG A 5 GLY A 10 1 N ILE A 7 O VAL A 84 SHEET 6 A 6 ASN A 28 PHE A 33 1 N ASN A 28 O ILE A 6 SHEET 1 B 4 TRP A 237 GLU A 239 0 SHEET 2 B 4 PRO A 244 LYS A 249 -1 N VAL A 245 O LEU A 238 SHEET 3 B 4 SER A 285 PRO A 288 -1 N GLN A 287 O LYS A 246 SHEET 4 B 4 ALA A 293 SER A 295 -1 N MET A 294 O LEU A 286 SHEET 1 C 3 ALA A 250 ILE A 253 0 SHEET 2 C 3 ILE A 280 LEU A 283 -1 N ASN A 282 O SER A 251 SHEET 3 C 3 ILE A 272 ALA A 275 -1 N VAL A 274 O LEU A 281 SHEET 1 D 6 MET B 150 PRO B 157 0 SHEET 2 D 6 GLU B 133 GLN B 140 -1 N ILE B 138 O LEU B 151 SHEET 3 D 6 CYS B 106 HIS B 110 -1 N HIS B 110 O THR B 137 SHEET 4 D 6 VAL B 84 VAL B 88 1 N MET B 85 O ILE B 107 SHEET 5 D 6 ARG B 5 GLY B 10 1 N ILE B 7 O VAL B 84 SHEET 6 D 6 ASN B 28 PHE B 33 1 N ASN B 28 O ILE B 6 SHEET 1 E 4 TRP B 237 GLU B 239 0 SHEET 2 E 4 PRO B 244 LYS B 249 -1 N VAL B 245 O LEU B 238 SHEET 3 E 4 SER B 285 PRO B 288 -1 N GLN B 287 O LYS B 246 SHEET 4 E 4 ALA B 293 SER B 295 -1 N MET B 294 O LEU B 286 SHEET 1 F 3 ALA B 250 ILE B 253 0 SHEET 2 F 3 ILE B 280 LEU B 283 -1 N ASN B 282 O SER B 251 SHEET 3 F 3 ILE B 272 ALA B 275 -1 N VAL B 274 O LEU B 281 LINK O3' G C 7 P 4SU C 8 1555 1555 1.62 LINK O3' 4SU C 8 P G C 9 1555 1555 1.60 LINK O3' G C 19 P H2U C 20 1555 1555 1.61 LINK O3' H2U C 20 P A C 21 1555 1555 1.60 LINK O3' G C 31 P OMC C 32 1555 1555 1.62 LINK O3' OMC C 32 P U C 33 1555 1555 1.63 LINK O3' G C 53 P 5MU C 54 1555 1555 1.62 LINK O3' 5MU C 54 P PSU C 55 1555 1555 1.60 LINK O3' PSU C 55 P C C 56 1555 1555 1.61 LINK O3' A C 76 C FME C 585 1555 1555 1.40 LINK O3' G D 7 P 4SU D 8 1555 1555 1.62 LINK O3' 4SU D 8 P G D 9 1555 1555 1.61 LINK O3' G D 19 P H2U D 20 1555 1555 1.61 LINK O3' H2U D 20 P A D 21 1555 1555 1.62 LINK O3' G D 31 P OMC D 32 1555 1555 1.61 LINK O3' OMC D 32 P U D 33 1555 1555 1.62 LINK O3' G D 53 P 5MU D 54 1555 1555 1.62 LINK O3' 5MU D 54 P PSU D 55 1555 1555 1.60 LINK O3' PSU D 55 P C D 56 1555 1555 1.61 LINK O3' A D 76 C FME D 586 1555 1555 1.36 LINK OP2 G C 9 MG MG C 584 1555 1555 2.72 LINK OP1 G D 9 MG MG D 585 1555 1555 3.05 CISPEP 1 LEU A 114 PRO A 115 0 0.48 CISPEP 2 ASN A 231 PRO A 232 0 -0.78 CISPEP 3 TRP A 233 PRO A 234 0 -0.39 CISPEP 4 LEU B 114 PRO B 115 0 0.01 CISPEP 5 ASN B 231 PRO B 232 0 0.58 CISPEP 6 TRP B 233 PRO B 234 0 -0.43 SITE 1 AC3 2 4SU C 8 G C 9 SITE 1 AC4 6 ALA A 89 TYR A 90 ASN A 108 GLY A 119 SITE 2 AC4 6 ALA A 120 A C 76 SITE 1 AC5 2 4SU D 8 G D 9 SITE 1 AC6 7 ALA B 89 TYR B 90 ASN B 108 GLY B 111 SITE 2 AC6 7 GLY B 119 ALA B 120 A D 76 CRYST1 201.710 68.060 86.350 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004958 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014693 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011581 0.00000 MTRIX1 1 0.979390 -0.201950 -0.002340 6.31224 1 MTRIX2 1 0.201930 0.979370 -0.008130 -48.79334 1 MTRIX3 1 0.003940 0.007490 0.999960 0.78390 1 MTRIX1 2 0.994740 -0.102400 -0.003480 3.90927 1 MTRIX2 2 0.102270 0.994380 -0.027190 -42.12500 1 MTRIX3 2 0.006250 0.026690 0.999620 0.04122 1