data_2FYR # _entry.id 2FYR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2FYR pdb_00002fyr 10.2210/pdb2fyr/pdb RCSB RCSB036471 ? ? WWPDB D_1000036471 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-07-25 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_ref_seq_dif 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 17 4 'Structure model' '_struct_conn.pdbx_dist_value' 18 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 19 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 24 4 'Structure model' '_struct_conn.ptnr1_symmetry' 25 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 26 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 30 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 31 4 'Structure model' '_struct_conn.ptnr2_symmetry' 32 4 'Structure model' '_struct_ref_seq_dif.details' 33 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 34 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 35 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 2FYR _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-02-08 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2FYQ _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zeitler, C.E.' 1 'Estes, M.K.' 2 'Venkataram Prasad, B.V.' 3 # _citation.id primary _citation.title 'X-ray crystallographic structure of the Norwalk virus protease at 1.5-A resolution.' _citation.journal_abbrev J.Virol. _citation.journal_volume 80 _citation.page_first 5050 _citation.page_last 5058 _citation.year 2006 _citation.journal_id_ASTM JOVIAM _citation.country US _citation.journal_id_ISSN 0022-538X _citation.journal_id_CSD 0825 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16641296 _citation.pdbx_database_id_DOI 10.1128/JVI.80.10.5050-5058.2006 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zeitler, C.E.' 1 ? primary 'Estes, M.K.' 2 ? primary 'Venkataram Prasad, B.V.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Chymotrypsin-like cysteine proteinase' 20786.738 1 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 water nat water 18.015 103 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MAHHHHHHDDDDKAPPTLWSRVTKFGSGWGFWVSPTVFITTTHVVPTGVKEFFGEPLSSIAIHQAGEFTQFRFSKKMRPD LTGMVLEEGCPEGTVCSVLIKRDSGELLPLAVRMGAIASMRIQGRLVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKR GNDWVVCGVHAAATKSGNTVVCAVQAGEGETALE ; _entity_poly.pdbx_seq_one_letter_code_can ;MAHHHHHHDDDDKAPPTLWSRVTKFGSGWGFWVSPTVFITTTHVVPTGVKEFFGEPLSSIAIHQAGEFTQFRFSKKMRPD LTGMVLEEGCPEGTVCSVLIKRDSGELLPLAVRMGAIASMRIQGRLVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKR GNDWVVCGVHAAATKSGNTVVCAVQAGEGETALE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 ASP n 1 10 ASP n 1 11 ASP n 1 12 ASP n 1 13 LYS n 1 14 ALA n 1 15 PRO n 1 16 PRO n 1 17 THR n 1 18 LEU n 1 19 TRP n 1 20 SER n 1 21 ARG n 1 22 VAL n 1 23 THR n 1 24 LYS n 1 25 PHE n 1 26 GLY n 1 27 SER n 1 28 GLY n 1 29 TRP n 1 30 GLY n 1 31 PHE n 1 32 TRP n 1 33 VAL n 1 34 SER n 1 35 PRO n 1 36 THR n 1 37 VAL n 1 38 PHE n 1 39 ILE n 1 40 THR n 1 41 THR n 1 42 THR n 1 43 HIS n 1 44 VAL n 1 45 VAL n 1 46 PRO n 1 47 THR n 1 48 GLY n 1 49 VAL n 1 50 LYS n 1 51 GLU n 1 52 PHE n 1 53 PHE n 1 54 GLY n 1 55 GLU n 1 56 PRO n 1 57 LEU n 1 58 SER n 1 59 SER n 1 60 ILE n 1 61 ALA n 1 62 ILE n 1 63 HIS n 1 64 GLN n 1 65 ALA n 1 66 GLY n 1 67 GLU n 1 68 PHE n 1 69 THR n 1 70 GLN n 1 71 PHE n 1 72 ARG n 1 73 PHE n 1 74 SER n 1 75 LYS n 1 76 LYS n 1 77 MET n 1 78 ARG n 1 79 PRO n 1 80 ASP n 1 81 LEU n 1 82 THR n 1 83 GLY n 1 84 MET n 1 85 VAL n 1 86 LEU n 1 87 GLU n 1 88 GLU n 1 89 GLY n 1 90 CYS n 1 91 PRO n 1 92 GLU n 1 93 GLY n 1 94 THR n 1 95 VAL n 1 96 CYS n 1 97 SER n 1 98 VAL n 1 99 LEU n 1 100 ILE n 1 101 LYS n 1 102 ARG n 1 103 ASP n 1 104 SER n 1 105 GLY n 1 106 GLU n 1 107 LEU n 1 108 LEU n 1 109 PRO n 1 110 LEU n 1 111 ALA n 1 112 VAL n 1 113 ARG n 1 114 MET n 1 115 GLY n 1 116 ALA n 1 117 ILE n 1 118 ALA n 1 119 SER n 1 120 MET n 1 121 ARG n 1 122 ILE n 1 123 GLN n 1 124 GLY n 1 125 ARG n 1 126 LEU n 1 127 VAL n 1 128 HIS n 1 129 GLY n 1 130 GLN n 1 131 SER n 1 132 GLY n 1 133 MET n 1 134 LEU n 1 135 LEU n 1 136 THR n 1 137 GLY n 1 138 ALA n 1 139 ASN n 1 140 ALA n 1 141 LYS n 1 142 GLY n 1 143 MET n 1 144 ASP n 1 145 LEU n 1 146 GLY n 1 147 THR n 1 148 ILE n 1 149 PRO n 1 150 GLY n 1 151 ASP n 1 152 CYS n 1 153 GLY n 1 154 ALA n 1 155 PRO n 1 156 TYR n 1 157 VAL n 1 158 HIS n 1 159 LYS n 1 160 ARG n 1 161 GLY n 1 162 ASN n 1 163 ASP n 1 164 TRP n 1 165 VAL n 1 166 VAL n 1 167 CYS n 1 168 GLY n 1 169 VAL n 1 170 HIS n 1 171 ALA n 1 172 ALA n 1 173 ALA n 1 174 THR n 1 175 LYS n 1 176 SER n 1 177 GLY n 1 178 ASN n 1 179 THR n 1 180 VAL n 1 181 VAL n 1 182 CYS n 1 183 ALA n 1 184 VAL n 1 185 GLN n 1 186 ALA n 1 187 GLY n 1 188 GLU n 1 189 GLY n 1 190 GLU n 1 191 THR n 1 192 ALA n 1 193 LEU n 1 194 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Norovirus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Norwalk virus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11983 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL-21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'PET46 EK-LIC' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -12 ? ? ? A . n A 1 2 ALA 2 -11 ? ? ? A . n A 1 3 HIS 3 -10 ? ? ? A . n A 1 4 HIS 4 -9 ? ? ? A . n A 1 5 HIS 5 -8 ? ? ? A . n A 1 6 HIS 6 -7 ? ? ? A . n A 1 7 HIS 7 -6 ? ? ? A . n A 1 8 HIS 8 -5 ? ? ? A . n A 1 9 ASP 9 -4 ? ? ? A . n A 1 10 ASP 10 -3 ? ? ? A . n A 1 11 ASP 11 -2 ? ? ? A . n A 1 12 ASP 12 -1 ? ? ? A . n A 1 13 LYS 13 0 ? ? ? A . n A 1 14 ALA 14 1 1 ALA ALA A . n A 1 15 PRO 15 2 2 PRO PRO A . n A 1 16 PRO 16 3 3 PRO PRO A . n A 1 17 THR 17 4 4 THR THR A . n A 1 18 LEU 18 5 5 LEU LEU A . n A 1 19 TRP 19 6 6 TRP TRP A . n A 1 20 SER 20 7 7 SER SER A . n A 1 21 ARG 21 8 8 ARG ARG A . n A 1 22 VAL 22 9 9 VAL VAL A . n A 1 23 THR 23 10 10 THR THR A . n A 1 24 LYS 24 11 11 LYS LYS A . n A 1 25 PHE 25 12 12 PHE PHE A . n A 1 26 GLY 26 13 13 GLY GLY A . n A 1 27 SER 27 14 14 SER SER A . n A 1 28 GLY 28 15 15 GLY GLY A . n A 1 29 TRP 29 16 16 TRP TRP A . n A 1 30 GLY 30 17 17 GLY GLY A . n A 1 31 PHE 31 18 18 PHE PHE A . n A 1 32 TRP 32 19 19 TRP TRP A . n A 1 33 VAL 33 20 20 VAL VAL A . n A 1 34 SER 34 21 21 SER SER A . n A 1 35 PRO 35 22 22 PRO PRO A . n A 1 36 THR 36 23 23 THR THR A . n A 1 37 VAL 37 24 24 VAL VAL A . n A 1 38 PHE 38 25 25 PHE PHE A . n A 1 39 ILE 39 26 26 ILE ILE A . n A 1 40 THR 40 27 27 THR THR A . n A 1 41 THR 41 28 28 THR THR A . n A 1 42 THR 42 29 29 THR THR A . n A 1 43 HIS 43 30 30 HIS HIS A . n A 1 44 VAL 44 31 31 VAL VAL A . n A 1 45 VAL 45 32 32 VAL VAL A . n A 1 46 PRO 46 33 33 PRO PRO A . n A 1 47 THR 47 34 34 THR THR A . n A 1 48 GLY 48 35 35 GLY GLY A . n A 1 49 VAL 49 36 36 VAL VAL A . n A 1 50 LYS 50 37 37 LYS LYS A . n A 1 51 GLU 51 38 38 GLU GLU A . n A 1 52 PHE 52 39 39 PHE PHE A . n A 1 53 PHE 53 40 40 PHE PHE A . n A 1 54 GLY 54 41 41 GLY GLY A . n A 1 55 GLU 55 42 42 GLU GLU A . n A 1 56 PRO 56 43 43 PRO PRO A . n A 1 57 LEU 57 44 44 LEU LEU A . n A 1 58 SER 58 45 45 SER SER A . n A 1 59 SER 59 46 46 SER SER A . n A 1 60 ILE 60 47 47 ILE ILE A . n A 1 61 ALA 61 48 48 ALA ALA A . n A 1 62 ILE 62 49 49 ILE ILE A . n A 1 63 HIS 63 50 50 HIS HIS A . n A 1 64 GLN 64 51 51 GLN GLN A . n A 1 65 ALA 65 52 52 ALA ALA A . n A 1 66 GLY 66 53 53 GLY GLY A . n A 1 67 GLU 67 54 54 GLU GLU A . n A 1 68 PHE 68 55 55 PHE PHE A . n A 1 69 THR 69 56 56 THR THR A . n A 1 70 GLN 70 57 57 GLN GLN A . n A 1 71 PHE 71 58 58 PHE PHE A . n A 1 72 ARG 72 59 59 ARG ARG A . n A 1 73 PHE 73 60 60 PHE PHE A . n A 1 74 SER 74 61 61 SER SER A . n A 1 75 LYS 75 62 62 LYS LYS A . n A 1 76 LYS 76 63 63 LYS LYS A . n A 1 77 MET 77 64 64 MET MET A . n A 1 78 ARG 78 65 65 ARG ARG A . n A 1 79 PRO 79 66 66 PRO PRO A . n A 1 80 ASP 80 67 67 ASP ASP A . n A 1 81 LEU 81 68 68 LEU LEU A . n A 1 82 THR 82 69 69 THR THR A . n A 1 83 GLY 83 70 70 GLY GLY A . n A 1 84 MET 84 71 71 MET MET A . n A 1 85 VAL 85 72 72 VAL VAL A . n A 1 86 LEU 86 73 73 LEU LEU A . n A 1 87 GLU 87 74 74 GLU GLU A . n A 1 88 GLU 88 75 75 GLU GLU A . n A 1 89 GLY 89 76 76 GLY GLY A . n A 1 90 CYS 90 77 77 CYS CYS A . n A 1 91 PRO 91 78 78 PRO PRO A . n A 1 92 GLU 92 79 79 GLU GLU A . n A 1 93 GLY 93 80 80 GLY GLY A . n A 1 94 THR 94 81 81 THR THR A . n A 1 95 VAL 95 82 82 VAL VAL A . n A 1 96 CYS 96 83 83 CYS CYS A . n A 1 97 SER 97 84 84 SER SER A . n A 1 98 VAL 98 85 85 VAL VAL A . n A 1 99 LEU 99 86 86 LEU LEU A . n A 1 100 ILE 100 87 87 ILE ILE A . n A 1 101 LYS 101 88 88 LYS LYS A . n A 1 102 ARG 102 89 89 ARG ARG A . n A 1 103 ASP 103 90 90 ASP ASP A . n A 1 104 SER 104 91 91 SER SER A . n A 1 105 GLY 105 92 92 GLY GLY A . n A 1 106 GLU 106 93 93 GLU GLU A . n A 1 107 LEU 107 94 94 LEU LEU A . n A 1 108 LEU 108 95 95 LEU LEU A . n A 1 109 PRO 109 96 96 PRO PRO A . n A 1 110 LEU 110 97 97 LEU LEU A . n A 1 111 ALA 111 98 98 ALA ALA A . n A 1 112 VAL 112 99 99 VAL VAL A . n A 1 113 ARG 113 100 100 ARG ARG A . n A 1 114 MET 114 101 101 MET MET A . n A 1 115 GLY 115 102 102 GLY GLY A . n A 1 116 ALA 116 103 103 ALA ALA A . n A 1 117 ILE 117 104 104 ILE ILE A . n A 1 118 ALA 118 105 105 ALA ALA A . n A 1 119 SER 119 106 106 SER SER A . n A 1 120 MET 120 107 107 MET MET A . n A 1 121 ARG 121 108 108 ARG ARG A . n A 1 122 ILE 122 109 109 ILE ILE A . n A 1 123 GLN 123 110 110 GLN GLN A . n A 1 124 GLY 124 111 111 GLY GLY A . n A 1 125 ARG 125 112 112 ARG ARG A . n A 1 126 LEU 126 113 113 LEU LEU A . n A 1 127 VAL 127 114 114 VAL VAL A . n A 1 128 HIS 128 115 115 HIS HIS A . n A 1 129 GLY 129 116 116 GLY GLY A . n A 1 130 GLN 130 117 117 GLN GLN A . n A 1 131 SER 131 118 118 SER SER A . n A 1 132 GLY 132 119 119 GLY GLY A . n A 1 133 MET 133 120 120 MET MET A . n A 1 134 LEU 134 121 121 LEU LEU A . n A 1 135 LEU 135 122 122 LEU LEU A . n A 1 136 THR 136 123 ? ? ? A . n A 1 137 GLY 137 124 ? ? ? A . n A 1 138 ALA 138 125 ? ? ? A . n A 1 139 ASN 139 126 ? ? ? A . n A 1 140 ALA 140 127 ? ? ? A . n A 1 141 LYS 141 128 ? ? ? A . n A 1 142 GLY 142 129 ? ? ? A . n A 1 143 MET 143 130 ? ? ? A . n A 1 144 ASP 144 131 ? ? ? A . n A 1 145 LEU 145 132 ? ? ? A . n A 1 146 GLY 146 133 133 GLY GLY A . n A 1 147 THR 147 134 134 THR THR A . n A 1 148 ILE 148 135 135 ILE ILE A . n A 1 149 PRO 149 136 136 PRO PRO A . n A 1 150 GLY 150 137 137 GLY GLY A . n A 1 151 ASP 151 138 138 ASP ASP A . n A 1 152 CYS 152 139 139 CYS CYS A . n A 1 153 GLY 153 140 140 GLY GLY A . n A 1 154 ALA 154 141 141 ALA ALA A . n A 1 155 PRO 155 142 142 PRO PRO A . n A 1 156 TYR 156 143 143 TYR TYR A . n A 1 157 VAL 157 144 144 VAL VAL A . n A 1 158 HIS 158 145 145 HIS HIS A . n A 1 159 LYS 159 146 146 LYS LYS A . n A 1 160 ARG 160 147 147 ARG ARG A . n A 1 161 GLY 161 148 148 GLY GLY A . n A 1 162 ASN 162 149 149 ASN ASN A . n A 1 163 ASP 163 150 150 ASP ASP A . n A 1 164 TRP 164 151 151 TRP TRP A . n A 1 165 VAL 165 152 152 VAL VAL A . n A 1 166 VAL 166 153 153 VAL VAL A . n A 1 167 CYS 167 154 154 CYS CYS A . n A 1 168 GLY 168 155 155 GLY GLY A . n A 1 169 VAL 169 156 156 VAL VAL A . n A 1 170 HIS 170 157 157 HIS HIS A . n A 1 171 ALA 171 158 158 ALA ALA A . n A 1 172 ALA 172 159 159 ALA ALA A . n A 1 173 ALA 173 160 160 ALA ALA A . n A 1 174 THR 174 161 161 THR THR A . n A 1 175 LYS 175 162 162 LYS LYS A . n A 1 176 SER 176 163 163 SER SER A . n A 1 177 GLY 177 164 164 GLY GLY A . n A 1 178 ASN 178 165 165 ASN ASN A . n A 1 179 THR 179 166 166 THR THR A . n A 1 180 VAL 180 167 167 VAL VAL A . n A 1 181 VAL 181 168 168 VAL VAL A . n A 1 182 CYS 182 169 169 CYS CYS A . n A 1 183 ALA 183 170 170 ALA ALA A . n A 1 184 VAL 184 171 171 VAL VAL A . n A 1 185 GLN 185 172 172 GLN GLN A . n A 1 186 ALA 186 173 173 ALA ALA A . n A 1 187 GLY 187 174 174 GLY GLY A . n A 1 188 GLU 188 175 175 GLU GLU A . n A 1 189 GLY 189 176 176 GLY GLY A . n A 1 190 GLU 190 177 177 GLU GLU A . n A 1 191 THR 191 178 178 THR THR A . n A 1 192 ALA 192 179 179 ALA ALA A . n A 1 193 LEU 193 180 180 LEU LEU A . n A 1 194 GLU 194 181 181 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 301 301 CL CL A . C 3 MG 1 302 302 MG MG A . D 4 HOH 1 303 2 HOH HOH A . D 4 HOH 2 304 3 HOH HOH A . D 4 HOH 3 305 4 HOH HOH A . D 4 HOH 4 306 5 HOH HOH A . D 4 HOH 5 307 6 HOH HOH A . D 4 HOH 6 308 7 HOH HOH A . D 4 HOH 7 309 8 HOH HOH A . D 4 HOH 8 310 9 HOH HOH A . D 4 HOH 9 311 10 HOH HOH A . D 4 HOH 10 312 11 HOH HOH A . D 4 HOH 11 313 12 HOH HOH A . D 4 HOH 12 314 13 HOH HOH A . D 4 HOH 13 315 14 HOH HOH A . D 4 HOH 14 316 16 HOH HOH A . D 4 HOH 15 317 17 HOH HOH A . D 4 HOH 16 318 18 HOH HOH A . D 4 HOH 17 319 19 HOH HOH A . D 4 HOH 18 320 20 HOH HOH A . D 4 HOH 19 321 21 HOH HOH A . D 4 HOH 20 322 24 HOH HOH A . D 4 HOH 21 323 26 HOH HOH A . D 4 HOH 22 324 27 HOH HOH A . D 4 HOH 23 325 28 HOH HOH A . D 4 HOH 24 326 29 HOH HOH A . D 4 HOH 25 327 30 HOH HOH A . D 4 HOH 26 328 31 HOH HOH A . D 4 HOH 27 329 32 HOH HOH A . D 4 HOH 28 330 33 HOH HOH A . D 4 HOH 29 331 34 HOH HOH A . D 4 HOH 30 332 35 HOH HOH A . D 4 HOH 31 333 36 HOH HOH A . D 4 HOH 32 334 37 HOH HOH A . D 4 HOH 33 335 39 HOH HOH A . D 4 HOH 34 336 40 HOH HOH A . D 4 HOH 35 337 41 HOH HOH A . D 4 HOH 36 338 42 HOH HOH A . D 4 HOH 37 339 43 HOH HOH A . D 4 HOH 38 340 44 HOH HOH A . D 4 HOH 39 341 45 HOH HOH A . D 4 HOH 40 342 48 HOH HOH A . D 4 HOH 41 343 49 HOH HOH A . D 4 HOH 42 344 50 HOH HOH A . D 4 HOH 43 345 51 HOH HOH A . D 4 HOH 44 346 54 HOH HOH A . D 4 HOH 45 347 56 HOH HOH A . D 4 HOH 46 348 57 HOH HOH A . D 4 HOH 47 349 60 HOH HOH A . D 4 HOH 48 350 61 HOH HOH A . D 4 HOH 49 351 63 HOH HOH A . D 4 HOH 50 352 65 HOH HOH A . D 4 HOH 51 353 66 HOH HOH A . D 4 HOH 52 354 70 HOH HOH A . D 4 HOH 53 355 77 HOH HOH A . D 4 HOH 54 356 78 HOH HOH A . D 4 HOH 55 357 79 HOH HOH A . D 4 HOH 56 358 80 HOH HOH A . D 4 HOH 57 359 86 HOH HOH A . D 4 HOH 58 360 87 HOH HOH A . D 4 HOH 59 361 93 HOH HOH A . D 4 HOH 60 362 107 HOH HOH A . D 4 HOH 61 363 135 HOH HOH A . D 4 HOH 62 364 145 HOH HOH A . D 4 HOH 63 365 148 HOH HOH A . D 4 HOH 64 366 153 HOH HOH A . D 4 HOH 65 367 155 HOH HOH A . D 4 HOH 66 368 156 HOH HOH A . D 4 HOH 67 369 157 HOH HOH A . D 4 HOH 68 370 161 HOH HOH A . D 4 HOH 69 371 162 HOH HOH A . D 4 HOH 70 372 164 HOH HOH A . D 4 HOH 71 373 166 HOH HOH A . D 4 HOH 72 374 167 HOH HOH A . D 4 HOH 73 375 168 HOH HOH A . D 4 HOH 74 376 169 HOH HOH A . D 4 HOH 75 377 170 HOH HOH A . D 4 HOH 76 378 171 HOH HOH A . D 4 HOH 77 379 172 HOH HOH A . D 4 HOH 78 380 177 HOH HOH A . D 4 HOH 79 381 178 HOH HOH A . D 4 HOH 80 382 179 HOH HOH A . D 4 HOH 81 383 185 HOH HOH A . D 4 HOH 82 384 189 HOH HOH A . D 4 HOH 83 385 190 HOH HOH A . D 4 HOH 84 386 196 HOH HOH A . D 4 HOH 85 387 198 HOH HOH A . D 4 HOH 86 388 199 HOH HOH A . D 4 HOH 87 389 201 HOH HOH A . D 4 HOH 88 390 203 HOH HOH A . D 4 HOH 89 391 204 HOH HOH A . D 4 HOH 90 392 210 HOH HOH A . D 4 HOH 91 393 213 HOH HOH A . D 4 HOH 92 394 218 HOH HOH A . D 4 HOH 93 395 219 HOH HOH A . D 4 HOH 94 396 220 HOH HOH A . D 4 HOH 95 397 221 HOH HOH A . D 4 HOH 96 398 222 HOH HOH A . D 4 HOH 97 399 223 HOH HOH A . D 4 HOH 98 400 225 HOH HOH A . D 4 HOH 99 401 227 HOH HOH A . D 4 HOH 100 402 228 HOH HOH A . D 4 HOH 101 403 229 HOH HOH A . D 4 HOH 102 404 230 HOH HOH A . D 4 HOH 103 405 231 HOH HOH A . # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal d*TREK 9.4LDz 'Apr 24 2005' package 'Pflugrath, J.W.' jwp@RigakuMSC.com 'data scaling' http://www.msc.com/protein/dtrek.html ? ? 1 PHASER . ? program 'R. J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 2 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns.csb.yale.edu/v1.1/ Fortran_77 ? 3 PDB_EXTRACT 1.701 'Nov. 1, 2005' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 # _cell.entry_id 2FYR _cell.length_a 120.490 _cell.length_b 120.490 _cell.length_c 51.249 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2FYR _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # _exptl.entry_id 2FYR _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.80 _exptl_crystal.density_percent_sol 56.07 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.50 _exptl_crystal_grow.pdbx_details '0.2M magnesium chloride, 0.1M bis-tris, 30% PEG 3350, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K, pH 5.50' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 93.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9794 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength 0.9794 _diffrn_source.pdbx_wavelength_list 0.9794 # _reflns.entry_id 2FYR _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 39.440 _reflns.d_resolution_high 2.200 _reflns.number_obs 11542 _reflns.number_all ? _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.20 _reflns_shell.d_res_low 2.28 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs 0.326 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.900 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2FYR _refine.ls_number_reflns_obs 18889 _refine.ls_number_reflns_all 20876 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.00 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 98.7 _refine.ls_R_factor_obs 0.211 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.211 _refine.ls_R_factor_R_free 0.246 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.400 _refine.ls_number_reflns_R_free 1987 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 25.67 _refine.aniso_B[1][1] -0.79800 _refine.aniso_B[2][2] -0.79800 _refine.aniso_B[3][3] 1.59600 _refine.aniso_B[1][2] -1.44300 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol 52.40 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1276 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 103 _refine_hist.number_atoms_total 1381 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 40.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.25 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 2.051 ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 1.336 ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.20 _refine_ls_shell.d_res_low 2.22 _refine_ls_shell.number_reflns_R_work 494 _refine_ls_shell.R_factor_R_work 0.228 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.333 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 44 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 DNA-RNA_REP.PARAM DNA-RNA.TOP 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 4 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 2FYR _struct.title 'Crystal Structure of Norwalk Virus Protease grown in the presence of AEBSF' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2FYR _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'protease, norovirus, Norwalk virus, Calicivirus, VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q83883_9CALI _struct_ref.pdbx_db_accession Q83883 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1101 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2FYR _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 14 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 194 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q83883 _struct_ref_seq.db_align_beg 1101 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1281 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 181 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2FYR MET A 1 ? UNP Q83883 ? ? 'initiating methionine' -12 1 1 2FYR ALA A 2 ? UNP Q83883 ? ? 'cloning artifact' -11 2 1 2FYR HIS A 3 ? UNP Q83883 ? ? 'expression tag' -10 3 1 2FYR HIS A 4 ? UNP Q83883 ? ? 'expression tag' -9 4 1 2FYR HIS A 5 ? UNP Q83883 ? ? 'expression tag' -8 5 1 2FYR HIS A 6 ? UNP Q83883 ? ? 'expression tag' -7 6 1 2FYR HIS A 7 ? UNP Q83883 ? ? 'expression tag' -6 7 1 2FYR HIS A 8 ? UNP Q83883 ? ? 'expression tag' -5 8 1 2FYR ASP A 9 ? UNP Q83883 ? ? 'cloning artifact' -4 9 1 2FYR ASP A 10 ? UNP Q83883 ? ? 'cloning artifact' -3 10 1 2FYR ASP A 11 ? UNP Q83883 ? ? 'cloning artifact' -2 11 1 2FYR ASP A 12 ? UNP Q83883 ? ? 'cloning artifact' -1 12 1 2FYR LYS A 13 ? UNP Q83883 ? ? 'cloning artifact' 0 13 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2670 ? 1 MORE -44 ? 1 'SSA (A^2)' 14870 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 9_555 -x,-x+y,-z+1/3 -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 17.0830000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 15 ? SER A 20 ? PRO A 2 SER A 7 1 ? 6 HELX_P HELX_P2 2 HIS A 43 ? VAL A 45 ? HIS A 30 VAL A 32 5 ? 3 HELX_P HELX_P3 3 ILE A 148 ? CYS A 152 ? ILE A 135 CYS A 139 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A GLU 92 OE1 ? ? ? 9_555 C MG . MG ? ? A GLU 79 A MG 302 1_555 ? ? ? ? ? ? ? 2.876 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 302 A HOH 402 1_555 ? ? ? ? ? ? ? 2.627 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id OE1 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id GLU _pdbx_struct_conn_angle.ptnr1_label_seq_id 92 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id GLU _pdbx_struct_conn_angle.ptnr1_auth_seq_id 79 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 9_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id MG _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id C _pdbx_struct_conn_angle.ptnr2_label_comp_id MG _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id MG _pdbx_struct_conn_angle.ptnr2_auth_seq_id 302 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id O _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id D _pdbx_struct_conn_angle.ptnr3_label_comp_id HOH _pdbx_struct_conn_angle.ptnr3_label_seq_id . _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id A _pdbx_struct_conn_angle.ptnr3_auth_comp_id HOH _pdbx_struct_conn_angle.ptnr3_auth_seq_id 402 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 96.7 _pdbx_struct_conn_angle.value_esd ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? C ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel C 6 7 ? anti-parallel C 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 22 ? PHE A 25 ? VAL A 9 PHE A 12 A 2 GLY A 28 ? TRP A 32 ? GLY A 15 TRP A 19 A 3 VAL A 37 ? THR A 41 ? VAL A 24 THR A 28 A 4 PHE A 68 ? PHE A 73 ? PHE A 55 PHE A 60 A 5 ILE A 60 ? ALA A 65 ? ILE A 47 ALA A 52 B 1 GLU A 51 ? PHE A 52 ? GLU A 38 PHE A 39 B 2 GLU A 55 ? PRO A 56 ? GLU A 42 PRO A 43 C 1 VAL A 85 ? LEU A 86 ? VAL A 72 LEU A 73 C 2 ASP A 163 ? ALA A 173 ? ASP A 150 ALA A 160 C 3 THR A 179 ? ALA A 183 ? THR A 166 ALA A 170 C 4 ARG A 125 ? LEU A 134 ? ARG A 112 LEU A 121 C 5 LEU A 107 ? ILE A 122 ? LEU A 94 ILE A 109 C 6 VAL A 95 ? LYS A 101 ? VAL A 82 LYS A 88 C 7 PRO A 155 ? ARG A 160 ? PRO A 142 ARG A 147 C 8 ASP A 163 ? ALA A 173 ? ASP A 150 ALA A 160 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 23 ? N THR A 10 O GLY A 30 ? O GLY A 17 A 2 3 N PHE A 31 ? N PHE A 18 O ILE A 39 ? O ILE A 26 A 3 4 N PHE A 38 ? N PHE A 25 O PHE A 71 ? O PHE A 58 A 4 5 O PHE A 68 ? O PHE A 55 N ALA A 65 ? N ALA A 52 B 1 2 N PHE A 52 ? N PHE A 39 O GLU A 55 ? O GLU A 42 C 1 2 N VAL A 85 ? N VAL A 72 O VAL A 166 ? O VAL A 153 C 2 3 N VAL A 169 ? N VAL A 156 O ALA A 183 ? O ALA A 170 C 3 4 O CYS A 182 ? O CYS A 169 N GLN A 130 ? N GLN A 117 C 4 5 O VAL A 127 ? O VAL A 114 N MET A 120 ? N MET A 107 C 5 6 O LEU A 108 ? O LEU A 95 N ILE A 100 ? N ILE A 87 C 6 7 N SER A 97 ? N SER A 84 O VAL A 157 ? O VAL A 144 C 7 8 N ARG A 160 ? N ARG A 147 O ASP A 163 ? O ASP A 150 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 301 ? 3 'BINDING SITE FOR RESIDUE CL A 301' AC2 Software A MG 302 ? 4 'BINDING SITE FOR RESIDUE MG A 302' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 SER A 20 ? SER A 7 . ? 1_555 ? 2 AC1 3 LYS A 101 ? LYS A 88 . ? 1_555 ? 3 AC1 3 HOH D . ? HOH A 333 . ? 11_554 ? 4 AC2 4 GLU A 92 ? GLU A 79 . ? 9_555 ? 5 AC2 4 GLY A 132 ? GLY A 119 . ? 1_555 ? 6 AC2 4 MET A 133 ? MET A 120 . ? 1_555 ? 7 AC2 4 HOH D . ? HOH A 402 . ? 1_555 ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 374 ? ? 1_555 O A HOH 374 ? ? 12_564 1.61 2 1 OD2 A ASP 150 ? ? 1_555 OD2 A ASP 150 ? ? 9_554 1.68 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 165 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -140.78 _pdbx_validate_torsion.psi 40.25 # _pdbx_phasing_MR.entry_id 2FYR _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 39.440 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 39.440 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -12 ? A MET 1 2 1 Y 1 A ALA -11 ? A ALA 2 3 1 Y 1 A HIS -10 ? A HIS 3 4 1 Y 1 A HIS -9 ? A HIS 4 5 1 Y 1 A HIS -8 ? A HIS 5 6 1 Y 1 A HIS -7 ? A HIS 6 7 1 Y 1 A HIS -6 ? A HIS 7 8 1 Y 1 A HIS -5 ? A HIS 8 9 1 Y 1 A ASP -4 ? A ASP 9 10 1 Y 1 A ASP -3 ? A ASP 10 11 1 Y 1 A ASP -2 ? A ASP 11 12 1 Y 1 A ASP -1 ? A ASP 12 13 1 Y 1 A LYS 0 ? A LYS 13 14 1 Y 1 A THR 123 ? A THR 136 15 1 Y 1 A GLY 124 ? A GLY 137 16 1 Y 1 A ALA 125 ? A ALA 138 17 1 Y 1 A ASN 126 ? A ASN 139 18 1 Y 1 A ALA 127 ? A ALA 140 19 1 Y 1 A LYS 128 ? A LYS 141 20 1 Y 1 A GLY 129 ? A GLY 142 21 1 Y 1 A MET 130 ? A MET 143 22 1 Y 1 A ASP 131 ? A ASP 144 23 1 Y 1 A LEU 132 ? A LEU 145 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 GLN N N N N 89 GLN CA C N S 90 GLN C C N N 91 GLN O O N N 92 GLN CB C N N 93 GLN CG C N N 94 GLN CD C N N 95 GLN OE1 O N N 96 GLN NE2 N N N 97 GLN OXT O N N 98 GLN H H N N 99 GLN H2 H N N 100 GLN HA H N N 101 GLN HB2 H N N 102 GLN HB3 H N N 103 GLN HG2 H N N 104 GLN HG3 H N N 105 GLN HE21 H N N 106 GLN HE22 H N N 107 GLN HXT H N N 108 GLU N N N N 109 GLU CA C N S 110 GLU C C N N 111 GLU O O N N 112 GLU CB C N N 113 GLU CG C N N 114 GLU CD C N N 115 GLU OE1 O N N 116 GLU OE2 O N N 117 GLU OXT O N N 118 GLU H H N N 119 GLU H2 H N N 120 GLU HA H N N 121 GLU HB2 H N N 122 GLU HB3 H N N 123 GLU HG2 H N N 124 GLU HG3 H N N 125 GLU HE2 H N N 126 GLU HXT H N N 127 GLY N N N N 128 GLY CA C N N 129 GLY C C N N 130 GLY O O N N 131 GLY OXT O N N 132 GLY H H N N 133 GLY H2 H N N 134 GLY HA2 H N N 135 GLY HA3 H N N 136 GLY HXT H N N 137 HIS N N N N 138 HIS CA C N S 139 HIS C C N N 140 HIS O O N N 141 HIS CB C N N 142 HIS CG C Y N 143 HIS ND1 N Y N 144 HIS CD2 C Y N 145 HIS CE1 C Y N 146 HIS NE2 N Y N 147 HIS OXT O N N 148 HIS H H N N 149 HIS H2 H N N 150 HIS HA H N N 151 HIS HB2 H N N 152 HIS HB3 H N N 153 HIS HD1 H N N 154 HIS HD2 H N N 155 HIS HE1 H N N 156 HIS HE2 H N N 157 HIS HXT H N N 158 HOH O O N N 159 HOH H1 H N N 160 HOH H2 H N N 161 ILE N N N N 162 ILE CA C N S 163 ILE C C N N 164 ILE O O N N 165 ILE CB C N S 166 ILE CG1 C N N 167 ILE CG2 C N N 168 ILE CD1 C N N 169 ILE OXT O N N 170 ILE H H N N 171 ILE H2 H N N 172 ILE HA H N N 173 ILE HB H N N 174 ILE HG12 H N N 175 ILE HG13 H N N 176 ILE HG21 H N N 177 ILE HG22 H N N 178 ILE HG23 H N N 179 ILE HD11 H N N 180 ILE HD12 H N N 181 ILE HD13 H N N 182 ILE HXT H N N 183 LEU N N N N 184 LEU CA C N S 185 LEU C C N N 186 LEU O O N N 187 LEU CB C N N 188 LEU CG C N N 189 LEU CD1 C N N 190 LEU CD2 C N N 191 LEU OXT O N N 192 LEU H H N N 193 LEU H2 H N N 194 LEU HA H N N 195 LEU HB2 H N N 196 LEU HB3 H N N 197 LEU HG H N N 198 LEU HD11 H N N 199 LEU HD12 H N N 200 LEU HD13 H N N 201 LEU HD21 H N N 202 LEU HD22 H N N 203 LEU HD23 H N N 204 LEU HXT H N N 205 LYS N N N N 206 LYS CA C N S 207 LYS C C N N 208 LYS O O N N 209 LYS CB C N N 210 LYS CG C N N 211 LYS CD C N N 212 LYS CE C N N 213 LYS NZ N N N 214 LYS OXT O N N 215 LYS H H N N 216 LYS H2 H N N 217 LYS HA H N N 218 LYS HB2 H N N 219 LYS HB3 H N N 220 LYS HG2 H N N 221 LYS HG3 H N N 222 LYS HD2 H N N 223 LYS HD3 H N N 224 LYS HE2 H N N 225 LYS HE3 H N N 226 LYS HZ1 H N N 227 LYS HZ2 H N N 228 LYS HZ3 H N N 229 LYS HXT H N N 230 MET N N N N 231 MET CA C N S 232 MET C C N N 233 MET O O N N 234 MET CB C N N 235 MET CG C N N 236 MET SD S N N 237 MET CE C N N 238 MET OXT O N N 239 MET H H N N 240 MET H2 H N N 241 MET HA H N N 242 MET HB2 H N N 243 MET HB3 H N N 244 MET HG2 H N N 245 MET HG3 H N N 246 MET HE1 H N N 247 MET HE2 H N N 248 MET HE3 H N N 249 MET HXT H N N 250 MG MG MG N N 251 PHE N N N N 252 PHE CA C N S 253 PHE C C N N 254 PHE O O N N 255 PHE CB C N N 256 PHE CG C Y N 257 PHE CD1 C Y N 258 PHE CD2 C Y N 259 PHE CE1 C Y N 260 PHE CE2 C Y N 261 PHE CZ C Y N 262 PHE OXT O N N 263 PHE H H N N 264 PHE H2 H N N 265 PHE HA H N N 266 PHE HB2 H N N 267 PHE HB3 H N N 268 PHE HD1 H N N 269 PHE HD2 H N N 270 PHE HE1 H N N 271 PHE HE2 H N N 272 PHE HZ H N N 273 PHE HXT H N N 274 PRO N N N N 275 PRO CA C N S 276 PRO C C N N 277 PRO O O N N 278 PRO CB C N N 279 PRO CG C N N 280 PRO CD C N N 281 PRO OXT O N N 282 PRO H H N N 283 PRO HA H N N 284 PRO HB2 H N N 285 PRO HB3 H N N 286 PRO HG2 H N N 287 PRO HG3 H N N 288 PRO HD2 H N N 289 PRO HD3 H N N 290 PRO HXT H N N 291 SER N N N N 292 SER CA C N S 293 SER C C N N 294 SER O O N N 295 SER CB C N N 296 SER OG O N N 297 SER OXT O N N 298 SER H H N N 299 SER H2 H N N 300 SER HA H N N 301 SER HB2 H N N 302 SER HB3 H N N 303 SER HG H N N 304 SER HXT H N N 305 THR N N N N 306 THR CA C N S 307 THR C C N N 308 THR O O N N 309 THR CB C N R 310 THR OG1 O N N 311 THR CG2 C N N 312 THR OXT O N N 313 THR H H N N 314 THR H2 H N N 315 THR HA H N N 316 THR HB H N N 317 THR HG1 H N N 318 THR HG21 H N N 319 THR HG22 H N N 320 THR HG23 H N N 321 THR HXT H N N 322 TRP N N N N 323 TRP CA C N S 324 TRP C C N N 325 TRP O O N N 326 TRP CB C N N 327 TRP CG C Y N 328 TRP CD1 C Y N 329 TRP CD2 C Y N 330 TRP NE1 N Y N 331 TRP CE2 C Y N 332 TRP CE3 C Y N 333 TRP CZ2 C Y N 334 TRP CZ3 C Y N 335 TRP CH2 C Y N 336 TRP OXT O N N 337 TRP H H N N 338 TRP H2 H N N 339 TRP HA H N N 340 TRP HB2 H N N 341 TRP HB3 H N N 342 TRP HD1 H N N 343 TRP HE1 H N N 344 TRP HE3 H N N 345 TRP HZ2 H N N 346 TRP HZ3 H N N 347 TRP HH2 H N N 348 TRP HXT H N N 349 TYR N N N N 350 TYR CA C N S 351 TYR C C N N 352 TYR O O N N 353 TYR CB C N N 354 TYR CG C Y N 355 TYR CD1 C Y N 356 TYR CD2 C Y N 357 TYR CE1 C Y N 358 TYR CE2 C Y N 359 TYR CZ C Y N 360 TYR OH O N N 361 TYR OXT O N N 362 TYR H H N N 363 TYR H2 H N N 364 TYR HA H N N 365 TYR HB2 H N N 366 TYR HB3 H N N 367 TYR HD1 H N N 368 TYR HD2 H N N 369 TYR HE1 H N N 370 TYR HE2 H N N 371 TYR HH H N N 372 TYR HXT H N N 373 VAL N N N N 374 VAL CA C N S 375 VAL C C N N 376 VAL O O N N 377 VAL CB C N N 378 VAL CG1 C N N 379 VAL CG2 C N N 380 VAL OXT O N N 381 VAL H H N N 382 VAL H2 H N N 383 VAL HA H N N 384 VAL HB H N N 385 VAL HG11 H N N 386 VAL HG12 H N N 387 VAL HG13 H N N 388 VAL HG21 H N N 389 VAL HG22 H N N 390 VAL HG23 H N N 391 VAL HXT H N N 392 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # _atom_sites.entry_id 2FYR _atom_sites.fract_transf_matrix[1][1] 0.008299 _atom_sites.fract_transf_matrix[1][2] 0.004792 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009583 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019513 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL MG N O S # loop_