data_2FZT # _entry.id 2FZT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2FZT pdb_00002fzt 10.2210/pdb2fzt/pdb RCSB RCSB036509 ? ? WWPDB D_1000036509 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 360368 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 2FZT _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-02-10 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of hypothetical protein (tm0693) from THERMOTOGA MARITIMA at 2.05 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 2FZT _cell.length_a 49.630 _cell.length_b 27.430 _cell.length_c 65.380 _cell.angle_alpha 90.000 _cell.angle_beta 102.600 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.Int_Tables_number 4 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.entry_id 2FZT _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'hypothetical protein TM0693' 9524.730 2 ? ? ? ? 2 non-polymer syn 'ISOPROPYL ALCOHOL' 60.095 1 ? ? ? ? 3 water nat water 18.015 140 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)NIDEIERKIDEAIEKEDYETLLSLLNKRKEL(MSE)EGLPKDKLSEILEKDRKRLEIIEKRKTALFQEINVIRE ARSSLQK ; _entity_poly.pdbx_seq_one_letter_code_can GMNIDEIERKIDEAIEKEDYETLLSLLNKRKELMEGLPKDKLSEILEKDRKRLEIIEKRKTALFQEINVIREARSSLQK _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier 360368 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 ASN n 1 4 ILE n 1 5 ASP n 1 6 GLU n 1 7 ILE n 1 8 GLU n 1 9 ARG n 1 10 LYS n 1 11 ILE n 1 12 ASP n 1 13 GLU n 1 14 ALA n 1 15 ILE n 1 16 GLU n 1 17 LYS n 1 18 GLU n 1 19 ASP n 1 20 TYR n 1 21 GLU n 1 22 THR n 1 23 LEU n 1 24 LEU n 1 25 SER n 1 26 LEU n 1 27 LEU n 1 28 ASN n 1 29 LYS n 1 30 ARG n 1 31 LYS n 1 32 GLU n 1 33 LEU n 1 34 MSE n 1 35 GLU n 1 36 GLY n 1 37 LEU n 1 38 PRO n 1 39 LYS n 1 40 ASP n 1 41 LYS n 1 42 LEU n 1 43 SER n 1 44 GLU n 1 45 ILE n 1 46 LEU n 1 47 GLU n 1 48 LYS n 1 49 ASP n 1 50 ARG n 1 51 LYS n 1 52 ARG n 1 53 LEU n 1 54 GLU n 1 55 ILE n 1 56 ILE n 1 57 GLU n 1 58 LYS n 1 59 ARG n 1 60 LYS n 1 61 THR n 1 62 ALA n 1 63 LEU n 1 64 PHE n 1 65 GLN n 1 66 GLU n 1 67 ILE n 1 68 ASN n 1 69 VAL n 1 70 ILE n 1 71 ARG n 1 72 GLU n 1 73 ALA n 1 74 ARG n 1 75 SER n 1 76 SER n 1 77 LEU n 1 78 GLN n 1 79 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermotoga _entity_src_gen.pdbx_gene_src_gene tm0693 _entity_src_gen.gene_src_species 'Thermotoga maritima' _entity_src_gen.gene_src_strain MSB8 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermotoga maritima' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 243274 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name MH1TEV _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code AAD35775 _struct_ref.pdbx_db_accession 4981216 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MNIDEIERKIDEAIEKEDYETLLSLLNKRKELMEGLPKDKLSEILEKDRKRLEIIEKRKTALFQEINVIREARSSLQK _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2FZT A 2 ? 79 ? 4981216 1 ? 78 ? 1 78 2 1 2FZT B 2 ? 79 ? 4981216 1 ? 78 ? 1 78 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2FZT GLY A 1 ? GB 4981216 ? ? 'expression tag' 0 1 1 2FZT MSE A 2 ? GB 4981216 MET 1 'modified residue' 1 2 1 2FZT MSE A 34 ? GB 4981216 MET 33 'modified residue' 33 3 2 2FZT GLY B 1 ? GB 4981216 ? ? 'expression tag' 0 4 2 2FZT MSE B 2 ? GB 4981216 MET 1 'modified residue' 1 5 2 2FZT MSE B 34 ? GB 4981216 MET 33 'modified residue' 33 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IPA non-polymer . 'ISOPROPYL ALCOHOL' 2-PROPANOL 'C3 H8 O' 60.095 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 2FZT # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 43.66 _exptl_crystal.density_Matthews 2.20 _exptl_crystal.description ? _exptl_crystal.density_meas ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION,SITTING DROP,NANODROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '10.0% iso-Propanol, 20.0% PEG-4000, 0.1M HEPES pH 7.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.details ? _diffrn_detector.pdbx_collection_date 2005-12-15 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double Crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9797 1.0 2 0.9999 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline 8.2.2 _diffrn_source.type 'ALS BEAMLINE 8.2.2' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9797, 0.9999' _diffrn_source.pdbx_synchrotron_site ALS # _reflns.entry_id 2FZT _reflns.d_resolution_high 2.050 _reflns.d_resolution_low 50.000 _reflns.number_obs 11175 _reflns.pdbx_Rmerge_I_obs 0.098 _reflns.pdbx_netI_over_sigmaI 8.500 _reflns.pdbx_chi_squared 0.983 _reflns.pdbx_redundancy 3.600 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.05 2.10 ? ? 809 0.514 ? ? 0.990 3.60 100.00 ? 100 1 1 2.10 2.16 ? ? 768 0.38 ? ? 0.939 3.70 99.90 ? ? 2 1 2.16 2.22 ? ? 768 0.316 ? ? 1.027 3.70 100.00 ? ? 3 1 2.22 2.29 ? ? 817 0.278 ? ? 0.969 3.70 100.00 ? ? 4 1 2.29 2.38 ? ? 767 0.226 ? ? 0.931 3.70 100.00 ? ? 5 1 2.38 2.47 ? ? 805 0.201 ? ? 0.981 3.70 100.00 ? ? 6 1 2.47 2.58 ? ? 782 0.169 ? ? 1.044 3.70 100.00 ? ? 7 1 2.58 2.72 ? ? 796 0.156 ? ? 0.975 3.70 100.00 ? ? 8 1 2.72 2.89 ? ? 777 0.116 ? ? 1.037 3.70 100.00 ? ? 9 1 2.89 3.11 ? ? 813 0.092 ? ? 1.008 3.70 99.90 ? ? 10 1 3.11 3.43 ? ? 798 0.076 ? ? 0.993 3.70 100.00 ? ? 11 1 3.43 3.92 ? ? 817 0.067 ? ? 0.937 3.60 100.00 ? ? 12 1 3.92 4.94 ? ? 800 0.052 ? ? 0.984 3.60 100.00 ? ? 13 1 4.94 50.00 ? ? 858 0.047 ? ? 0.941 3.40 99.50 ? ? 14 1 # _refine.ls_d_res_high 2.050 _refine.ls_d_res_low 21.70 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.860 _refine.ls_number_reflns_obs 11154 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1.HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 2.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. ; _refine.ls_R_factor_all 0.197 _refine.ls_R_factor_R_work 0.194 _refine.ls_R_factor_R_free 0.254 _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 532 _refine.B_iso_mean 24.138 _refine.aniso_B[1][1] -0.550 _refine.aniso_B[2][2] 0.160 _refine.aniso_B[3][3] 0.050 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -0.800 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.945 _refine.correlation_coeff_Fo_to_Fc_free 0.914 _refine.pdbx_overall_ESU_R 0.215 _refine.pdbx_overall_ESU_R_Free 0.193 _refine.overall_SU_ML 0.146 _refine.overall_SU_B 10.085 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.entry_id 2FZT _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_obs 0.197 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1263 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 140 _refine_hist.number_atoms_total 1407 _refine_hist.d_res_high 2.050 _refine_hist.d_res_low 21.70 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1274 0.012 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1275 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1697 1.226 2.027 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2966 0.833 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 157 4.792 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 55 27.751 24.909 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 294 13.789 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12 21.959 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 201 0.074 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1348 0.004 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 220 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 294 0.211 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1244 0.168 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 631 0.165 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 771 0.081 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 89 0.168 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 9 0.168 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 35 0.230 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 8 0.134 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 899 2.198 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 320 0.569 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1274 2.696 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 503 5.454 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 422 7.674 11.000 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 1 'MEDIUM POSITIONAL' A 457 0.200 0.500 1 'X-RAY DIFFRACTION' 1 ? ? ? 1 'LOOSE POSITIONAL' A 745 0.650 5.000 1 'X-RAY DIFFRACTION' 2 ? ? ? 1 'MEDIUM THERMAL' A 457 0.890 2.000 1 'X-RAY DIFFRACTION' 3 ? ? ? 1 'LOOSE THERMAL' A 745 2.310 10.000 1 'X-RAY DIFFRACTION' 4 ? ? ? # _refine_ls_shell.d_res_high 2.05 _refine_ls_shell.d_res_low 2.102 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.880 _refine_ls_shell.number_reflns_R_work 807 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.221 _refine_ls_shell.R_factor_R_free 0.307 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 37 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 844 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B # loop_ _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.selection_details 1 1 A 2 A 78 5 . . MSE GLN A 1 A 77 1 ? 2 1 B 2 B 78 5 . . MSE GLN B 1 B 77 1 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 2FZT _struct.title 'CRYSTAL STRUCTURE OF a putative nucleic acid binding protein (TM0693) FROM THERMOTOGA MARITIMA MSB8 AT 2.05 A RESOLUTION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text 'STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, GENE REGULATION' _struct_keywords.pdbx_keywords 'GENE REGULATION' _struct_keywords.entry_id 2FZT # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.details ;SIZE EXCLUSION CHROMATOGRAPHY DATA SUPPORTS THE ASSIGNMENT OF A DIMER AS A BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE. ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 3 ? GLU A 18 ? ASN A 2 GLU A 17 1 ? 16 HELX_P HELX_P2 2 ASP A 19 ? GLU A 32 ? ASP A 18 GLU A 31 1 ? 14 HELX_P HELX_P3 3 LEU A 33 ? LEU A 37 ? LEU A 32 LEU A 36 5 ? 5 HELX_P HELX_P4 4 PRO A 38 ? LYS A 79 ? PRO A 37 LYS A 78 1 ? 42 HELX_P HELX_P5 5 ASN B 3 ? GLU B 18 ? ASN B 2 GLU B 17 1 ? 16 HELX_P HELX_P6 6 ASP B 19 ? GLU B 32 ? ASP B 18 GLU B 31 1 ? 14 HELX_P HELX_P7 7 LEU B 33 ? LEU B 37 ? LEU B 32 LEU B 36 5 ? 5 HELX_P HELX_P8 8 PRO B 38 ? GLN B 78 ? PRO B 37 GLN B 77 1 ? 41 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MSE 2 C ? ? ? 1_555 A ASN 3 N ? ? A MSE 1 A ASN 2 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale2 covale both ? A LEU 33 C ? ? ? 1_555 A MSE 34 N ? ? A LEU 32 A MSE 33 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale3 covale both ? A MSE 34 C ? ? ? 1_555 A GLU 35 N ? ? A MSE 33 A GLU 34 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale4 covale both ? B GLY 1 C ? ? ? 1_555 B MSE 2 N ? ? B GLY 0 B MSE 1 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale5 covale both ? B MSE 2 C ? ? ? 1_555 B ASN 3 N ? ? B MSE 1 B ASN 2 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale6 covale both ? B LEU 33 C ? ? ? 1_555 B MSE 34 N ? ? B LEU 32 B MSE 33 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale7 covale both ? B MSE 34 C ? ? ? 1_555 B GLU 35 N ? ? B MSE 33 B GLU 34 1_555 ? ? ? ? ? ? ? 1.333 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id IPA _struct_site.pdbx_auth_seq_id 79 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 2 _struct_site.details 'BINDING SITE FOR RESIDUE IPA B 79' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 ARG B 74 ? ARG B 73 . ? 1_555 ? 2 AC1 2 HOH E . ? HOH B 92 . ? 1_555 ? # _atom_sites.entry_id 2FZT _atom_sites.fract_transf_matrix[1][1] 0.02015 _atom_sites.fract_transf_matrix[1][2] 0.00000 _atom_sites.fract_transf_matrix[1][3] 0.00450 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.03646 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.01567 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 ASN 3 2 2 ASN ASN A . n A 1 4 ILE 4 3 3 ILE ILE A . n A 1 5 ASP 5 4 4 ASP ASP A . n A 1 6 GLU 6 5 5 GLU GLU A . n A 1 7 ILE 7 6 6 ILE ILE A . n A 1 8 GLU 8 7 7 GLU GLU A . n A 1 9 ARG 9 8 8 ARG ARG A . n A 1 10 LYS 10 9 9 LYS LYS A . n A 1 11 ILE 11 10 10 ILE ILE A . n A 1 12 ASP 12 11 11 ASP ASP A . n A 1 13 GLU 13 12 12 GLU GLU A . n A 1 14 ALA 14 13 13 ALA ALA A . n A 1 15 ILE 15 14 14 ILE ILE A . n A 1 16 GLU 16 15 15 GLU GLU A . n A 1 17 LYS 17 16 16 LYS LYS A . n A 1 18 GLU 18 17 17 GLU GLU A . n A 1 19 ASP 19 18 18 ASP ASP A . n A 1 20 TYR 20 19 19 TYR TYR A . n A 1 21 GLU 21 20 20 GLU GLU A . n A 1 22 THR 22 21 21 THR THR A . n A 1 23 LEU 23 22 22 LEU LEU A . n A 1 24 LEU 24 23 23 LEU LEU A . n A 1 25 SER 25 24 24 SER SER A . n A 1 26 LEU 26 25 25 LEU LEU A . n A 1 27 LEU 27 26 26 LEU LEU A . n A 1 28 ASN 28 27 27 ASN ASN A . n A 1 29 LYS 29 28 28 LYS LYS A . n A 1 30 ARG 30 29 29 ARG ARG A . n A 1 31 LYS 31 30 30 LYS LYS A . n A 1 32 GLU 32 31 31 GLU GLU A . n A 1 33 LEU 33 32 32 LEU LEU A . n A 1 34 MSE 34 33 33 MSE MSE A . n A 1 35 GLU 35 34 34 GLU GLU A . n A 1 36 GLY 36 35 35 GLY GLY A . n A 1 37 LEU 37 36 36 LEU LEU A . n A 1 38 PRO 38 37 37 PRO PRO A . n A 1 39 LYS 39 38 38 LYS LYS A . n A 1 40 ASP 40 39 39 ASP ASP A . n A 1 41 LYS 41 40 40 LYS LYS A . n A 1 42 LEU 42 41 41 LEU LEU A . n A 1 43 SER 43 42 42 SER SER A . n A 1 44 GLU 44 43 43 GLU GLU A . n A 1 45 ILE 45 44 44 ILE ILE A . n A 1 46 LEU 46 45 45 LEU LEU A . n A 1 47 GLU 47 46 46 GLU GLU A . n A 1 48 LYS 48 47 47 LYS LYS A . n A 1 49 ASP 49 48 48 ASP ASP A . n A 1 50 ARG 50 49 49 ARG ARG A . n A 1 51 LYS 51 50 50 LYS LYS A . n A 1 52 ARG 52 51 51 ARG ARG A . n A 1 53 LEU 53 52 52 LEU LEU A . n A 1 54 GLU 54 53 53 GLU GLU A . n A 1 55 ILE 55 54 54 ILE ILE A . n A 1 56 ILE 56 55 55 ILE ILE A . n A 1 57 GLU 57 56 56 GLU GLU A . n A 1 58 LYS 58 57 57 LYS LYS A . n A 1 59 ARG 59 58 58 ARG ARG A . n A 1 60 LYS 60 59 59 LYS LYS A . n A 1 61 THR 61 60 60 THR THR A . n A 1 62 ALA 62 61 61 ALA ALA A . n A 1 63 LEU 63 62 62 LEU LEU A . n A 1 64 PHE 64 63 63 PHE PHE A . n A 1 65 GLN 65 64 64 GLN GLN A . n A 1 66 GLU 66 65 65 GLU GLU A . n A 1 67 ILE 67 66 66 ILE ILE A . n A 1 68 ASN 68 67 67 ASN ASN A . n A 1 69 VAL 69 68 68 VAL VAL A . n A 1 70 ILE 70 69 69 ILE ILE A . n A 1 71 ARG 71 70 70 ARG ARG A . n A 1 72 GLU 72 71 71 GLU GLU A . n A 1 73 ALA 73 72 72 ALA ALA A . n A 1 74 ARG 74 73 73 ARG ARG A . n A 1 75 SER 75 74 74 SER SER A . n A 1 76 SER 76 75 75 SER SER A . n A 1 77 LEU 77 76 76 LEU LEU A . n A 1 78 GLN 78 77 77 GLN GLN A . n A 1 79 LYS 79 78 78 LYS LYS A . n B 1 1 GLY 1 0 0 GLY GLY B . n B 1 2 MSE 2 1 1 MSE MSE B . n B 1 3 ASN 3 2 2 ASN ASN B . n B 1 4 ILE 4 3 3 ILE ILE B . n B 1 5 ASP 5 4 4 ASP ASP B . n B 1 6 GLU 6 5 5 GLU GLU B . n B 1 7 ILE 7 6 6 ILE ILE B . n B 1 8 GLU 8 7 7 GLU GLU B . n B 1 9 ARG 9 8 8 ARG ARG B . n B 1 10 LYS 10 9 9 LYS LYS B . n B 1 11 ILE 11 10 10 ILE ILE B . n B 1 12 ASP 12 11 11 ASP ASP B . n B 1 13 GLU 13 12 12 GLU GLU B . n B 1 14 ALA 14 13 13 ALA ALA B . n B 1 15 ILE 15 14 14 ILE ILE B . n B 1 16 GLU 16 15 15 GLU GLU B . n B 1 17 LYS 17 16 16 LYS LYS B . n B 1 18 GLU 18 17 17 GLU GLU B . n B 1 19 ASP 19 18 18 ASP ASP B . n B 1 20 TYR 20 19 19 TYR TYR B . n B 1 21 GLU 21 20 20 GLU GLU B . n B 1 22 THR 22 21 21 THR THR B . n B 1 23 LEU 23 22 22 LEU LEU B . n B 1 24 LEU 24 23 23 LEU LEU B . n B 1 25 SER 25 24 24 SER SER B . n B 1 26 LEU 26 25 25 LEU LEU B . n B 1 27 LEU 27 26 26 LEU LEU B . n B 1 28 ASN 28 27 27 ASN ASN B . n B 1 29 LYS 29 28 28 LYS LYS B . n B 1 30 ARG 30 29 29 ARG ARG B . n B 1 31 LYS 31 30 30 LYS LYS B . n B 1 32 GLU 32 31 31 GLU GLU B . n B 1 33 LEU 33 32 32 LEU LEU B . n B 1 34 MSE 34 33 33 MSE MSE B . n B 1 35 GLU 35 34 34 GLU GLU B . n B 1 36 GLY 36 35 35 GLY GLY B . n B 1 37 LEU 37 36 36 LEU LEU B . n B 1 38 PRO 38 37 37 PRO PRO B . n B 1 39 LYS 39 38 38 LYS LYS B . n B 1 40 ASP 40 39 39 ASP ASP B . n B 1 41 LYS 41 40 40 LYS LYS B . n B 1 42 LEU 42 41 41 LEU LEU B . n B 1 43 SER 43 42 42 SER SER B . n B 1 44 GLU 44 43 43 GLU GLU B . n B 1 45 ILE 45 44 44 ILE ILE B . n B 1 46 LEU 46 45 45 LEU LEU B . n B 1 47 GLU 47 46 46 GLU GLU B . n B 1 48 LYS 48 47 47 LYS LYS B . n B 1 49 ASP 49 48 48 ASP ASP B . n B 1 50 ARG 50 49 49 ARG ARG B . n B 1 51 LYS 51 50 50 LYS LYS B . n B 1 52 ARG 52 51 51 ARG ARG B . n B 1 53 LEU 53 52 52 LEU LEU B . n B 1 54 GLU 54 53 53 GLU GLU B . n B 1 55 ILE 55 54 54 ILE ILE B . n B 1 56 ILE 56 55 55 ILE ILE B . n B 1 57 GLU 57 56 56 GLU GLU B . n B 1 58 LYS 58 57 57 LYS LYS B . n B 1 59 ARG 59 58 58 ARG ARG B . n B 1 60 LYS 60 59 59 LYS LYS B . n B 1 61 THR 61 60 60 THR THR B . n B 1 62 ALA 62 61 61 ALA ALA B . n B 1 63 LEU 63 62 62 LEU LEU B . n B 1 64 PHE 64 63 63 PHE PHE B . n B 1 65 GLN 65 64 64 GLN GLN B . n B 1 66 GLU 66 65 65 GLU GLU B . n B 1 67 ILE 67 66 66 ILE ILE B . n B 1 68 ASN 68 67 67 ASN ASN B . n B 1 69 VAL 69 68 68 VAL VAL B . n B 1 70 ILE 70 69 69 ILE ILE B . n B 1 71 ARG 71 70 70 ARG ARG B . n B 1 72 GLU 72 71 71 GLU GLU B . n B 1 73 ALA 73 72 72 ALA ALA B . n B 1 74 ARG 74 73 73 ARG ARG B . n B 1 75 SER 75 74 74 SER SER B . n B 1 76 SER 76 75 75 SER SER B . n B 1 77 LEU 77 76 76 LEU LEU B . n B 1 78 GLN 78 77 77 GLN GLN B . n B 1 79 LYS 79 78 78 LYS LYS B . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IPA 1 79 1 IPA IPA B . D 3 HOH 1 79 2 HOH HOH A . D 3 HOH 2 80 3 HOH HOH A . D 3 HOH 3 81 4 HOH HOH A . D 3 HOH 4 82 6 HOH HOH A . D 3 HOH 5 83 7 HOH HOH A . D 3 HOH 6 84 8 HOH HOH A . D 3 HOH 7 85 9 HOH HOH A . D 3 HOH 8 86 10 HOH HOH A . D 3 HOH 9 87 11 HOH HOH A . D 3 HOH 10 88 12 HOH HOH A . D 3 HOH 11 89 13 HOH HOH A . D 3 HOH 12 90 18 HOH HOH A . D 3 HOH 13 91 22 HOH HOH A . D 3 HOH 14 92 23 HOH HOH A . D 3 HOH 15 93 27 HOH HOH A . D 3 HOH 16 94 31 HOH HOH A . D 3 HOH 17 95 32 HOH HOH A . D 3 HOH 18 96 33 HOH HOH A . D 3 HOH 19 97 35 HOH HOH A . D 3 HOH 20 98 36 HOH HOH A . D 3 HOH 21 99 37 HOH HOH A . D 3 HOH 22 100 38 HOH HOH A . D 3 HOH 23 101 39 HOH HOH A . D 3 HOH 24 102 42 HOH HOH A . D 3 HOH 25 103 44 HOH HOH A . D 3 HOH 26 104 45 HOH HOH A . D 3 HOH 27 105 50 HOH HOH A . D 3 HOH 28 106 51 HOH HOH A . D 3 HOH 29 107 52 HOH HOH A . D 3 HOH 30 108 53 HOH HOH A . D 3 HOH 31 109 54 HOH HOH A . D 3 HOH 32 110 55 HOH HOH A . D 3 HOH 33 111 57 HOH HOH A . D 3 HOH 34 112 58 HOH HOH A . D 3 HOH 35 113 59 HOH HOH A . D 3 HOH 36 114 60 HOH HOH A . D 3 HOH 37 115 62 HOH HOH A . D 3 HOH 38 116 63 HOH HOH A . D 3 HOH 39 117 64 HOH HOH A . D 3 HOH 40 118 66 HOH HOH A . D 3 HOH 41 119 68 HOH HOH A . D 3 HOH 42 120 72 HOH HOH A . D 3 HOH 43 121 73 HOH HOH A . D 3 HOH 44 122 74 HOH HOH A . D 3 HOH 45 123 75 HOH HOH A . D 3 HOH 46 124 76 HOH HOH A . D 3 HOH 47 125 77 HOH HOH A . D 3 HOH 48 126 78 HOH HOH A . D 3 HOH 49 127 80 HOH HOH A . D 3 HOH 50 128 83 HOH HOH A . D 3 HOH 51 129 84 HOH HOH A . D 3 HOH 52 130 87 HOH HOH A . D 3 HOH 53 131 90 HOH HOH A . D 3 HOH 54 132 91 HOH HOH A . D 3 HOH 55 133 92 HOH HOH A . D 3 HOH 56 134 93 HOH HOH A . D 3 HOH 57 135 94 HOH HOH A . D 3 HOH 58 136 97 HOH HOH A . D 3 HOH 59 137 99 HOH HOH A . D 3 HOH 60 138 101 HOH HOH A . D 3 HOH 61 139 103 HOH HOH A . D 3 HOH 62 140 106 HOH HOH A . D 3 HOH 63 141 111 HOH HOH A . D 3 HOH 64 142 113 HOH HOH A . D 3 HOH 65 143 116 HOH HOH A . D 3 HOH 66 144 117 HOH HOH A . D 3 HOH 67 145 118 HOH HOH A . D 3 HOH 68 146 120 HOH HOH A . D 3 HOH 69 147 122 HOH HOH A . D 3 HOH 70 148 123 HOH HOH A . D 3 HOH 71 149 124 HOH HOH A . D 3 HOH 72 150 126 HOH HOH A . D 3 HOH 73 151 130 HOH HOH A . D 3 HOH 74 152 131 HOH HOH A . D 3 HOH 75 153 133 HOH HOH A . D 3 HOH 76 154 137 HOH HOH A . D 3 HOH 77 155 141 HOH HOH A . E 3 HOH 1 80 5 HOH HOH B . E 3 HOH 2 81 14 HOH HOH B . E 3 HOH 3 82 15 HOH HOH B . E 3 HOH 4 83 16 HOH HOH B . E 3 HOH 5 84 17 HOH HOH B . E 3 HOH 6 85 19 HOH HOH B . E 3 HOH 7 86 20 HOH HOH B . E 3 HOH 8 87 21 HOH HOH B . E 3 HOH 9 88 24 HOH HOH B . E 3 HOH 10 89 25 HOH HOH B . E 3 HOH 11 90 26 HOH HOH B . E 3 HOH 12 91 28 HOH HOH B . E 3 HOH 13 92 29 HOH HOH B . E 3 HOH 14 93 30 HOH HOH B . E 3 HOH 15 94 34 HOH HOH B . E 3 HOH 16 95 40 HOH HOH B . E 3 HOH 17 96 41 HOH HOH B . E 3 HOH 18 97 43 HOH HOH B . E 3 HOH 19 98 46 HOH HOH B . E 3 HOH 20 99 47 HOH HOH B . E 3 HOH 21 100 48 HOH HOH B . E 3 HOH 22 101 49 HOH HOH B . E 3 HOH 23 102 56 HOH HOH B . E 3 HOH 24 103 61 HOH HOH B . E 3 HOH 25 104 65 HOH HOH B . E 3 HOH 26 105 67 HOH HOH B . E 3 HOH 27 106 69 HOH HOH B . E 3 HOH 28 107 70 HOH HOH B . E 3 HOH 29 108 71 HOH HOH B . E 3 HOH 30 109 79 HOH HOH B . E 3 HOH 31 110 81 HOH HOH B . E 3 HOH 32 111 82 HOH HOH B . E 3 HOH 33 112 85 HOH HOH B . E 3 HOH 34 113 86 HOH HOH B . E 3 HOH 35 114 88 HOH HOH B . E 3 HOH 36 115 89 HOH HOH B . E 3 HOH 37 116 95 HOH HOH B . E 3 HOH 38 117 96 HOH HOH B . E 3 HOH 39 118 98 HOH HOH B . E 3 HOH 40 119 100 HOH HOH B . E 3 HOH 41 120 102 HOH HOH B . E 3 HOH 42 121 104 HOH HOH B . E 3 HOH 43 122 105 HOH HOH B . E 3 HOH 44 123 107 HOH HOH B . E 3 HOH 45 124 108 HOH HOH B . E 3 HOH 46 125 109 HOH HOH B . E 3 HOH 47 126 110 HOH HOH B . E 3 HOH 48 127 112 HOH HOH B . E 3 HOH 49 128 114 HOH HOH B . E 3 HOH 50 129 115 HOH HOH B . E 3 HOH 51 130 119 HOH HOH B . E 3 HOH 52 131 121 HOH HOH B . E 3 HOH 53 132 125 HOH HOH B . E 3 HOH 54 133 128 HOH HOH B . E 3 HOH 55 134 129 HOH HOH B . E 3 HOH 56 135 132 HOH HOH B . E 3 HOH 57 136 134 HOH HOH B . E 3 HOH 58 137 135 HOH HOH B . E 3 HOH 59 138 136 HOH HOH B . E 3 HOH 60 139 138 HOH HOH B . E 3 HOH 61 140 139 HOH HOH B . E 3 HOH 62 141 140 HOH HOH B . E 3 HOH 63 142 142 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 34 A MSE 33 ? MET SELENOMETHIONINE 3 B MSE 2 B MSE 1 ? MET SELENOMETHIONINE 4 B MSE 34 B MSE 33 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2950 ? 1 MORE -23 ? 1 'SSA (A^2)' 9610 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-03-21 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-25 5 'Structure model' 1 4 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Source and taxonomy' 4 3 'Structure model' 'Version format compliance' 5 4 'Structure model' 'Author supporting evidence' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_struct_assembly_auth_evidence 2 5 'Structure model' database_2 3 5 'Structure model' struct_conn 4 5 'Structure model' struct_ref_seq_dif 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 5 'Structure model' '_struct_ref_seq_dif.details' 5 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 16.0717 1.9953 7.3357 -0.1212 -0.1202 -0.0637 0.0000 0.0288 0.0338 1.6143 1.3441 5.2284 0.5795 1.5021 1.6687 0.0085 -0.0105 0.0020 0.1500 0.1184 0.0364 -0.0283 0.0994 0.1292 'X-RAY DIFFRACTION' 2 ? refined 28.4393 12.7655 30.0868 -0.0884 -0.0868 -0.0569 0.0111 0.0270 0.0050 2.2891 1.5047 3.6101 1.2801 2.0277 1.2742 -0.0608 -0.0384 0.0992 0.0638 -0.0077 -0.0115 -0.0447 -0.1455 0.1215 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 2 A 79 ALL A 1 A 78 'X-RAY DIFFRACTION' ? 2 2 B 1 B 79 ALL B 0 B 78 'X-RAY DIFFRACTION' ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0005 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 PDB_EXTRACT 1.701 'Nov. 1, 2005' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 3 DENZO . ? ? ? ? 'data reduction' ? ? ? 4 SHELX . ? ? ? ? phasing ? ? ? 5 autoSHARP . ? ? ? ? phasing ? ? ? 6 # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 300 ;BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). SIZE EXCLUSION CHROMATOGRAPHY DATA SUPPORTS THE ASSIGNMENT OF A DIMER AS A BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE. ; 999 ;SEQUENCE: THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 5 ? CD ? A GLU 6 CD 2 1 Y 1 A GLU 5 ? OE1 ? A GLU 6 OE1 3 1 Y 1 A GLU 5 ? OE2 ? A GLU 6 OE2 4 1 Y 1 A GLU 20 ? CD ? A GLU 21 CD 5 1 Y 1 A GLU 20 ? OE1 ? A GLU 21 OE1 6 1 Y 1 A GLU 20 ? OE2 ? A GLU 21 OE2 7 1 Y 1 A LYS 28 ? CD ? A LYS 29 CD 8 1 Y 1 A LYS 28 ? CE ? A LYS 29 CE 9 1 Y 1 A LYS 28 ? NZ ? A LYS 29 NZ 10 1 Y 1 A GLU 34 ? CD ? A GLU 35 CD 11 1 Y 1 A GLU 34 ? OE1 ? A GLU 35 OE1 12 1 Y 1 A GLU 34 ? OE2 ? A GLU 35 OE2 13 1 Y 1 A LYS 38 ? CE ? A LYS 39 CE 14 1 Y 1 A LYS 38 ? NZ ? A LYS 39 NZ 15 1 Y 1 A ASN 67 ? OD1 ? A ASN 68 OD1 16 1 Y 1 A ASN 67 ? ND2 ? A ASN 68 ND2 17 1 Y 1 A ARG 70 ? NE ? A ARG 71 NE 18 1 Y 1 A ARG 70 ? CZ ? A ARG 71 CZ 19 1 Y 1 A ARG 70 ? NH1 ? A ARG 71 NH1 20 1 Y 1 A ARG 70 ? NH2 ? A ARG 71 NH2 21 1 Y 1 B LYS 16 ? CD ? B LYS 17 CD 22 1 Y 1 B LYS 16 ? CE ? B LYS 17 CE 23 1 Y 1 B LYS 16 ? NZ ? B LYS 17 NZ 24 1 Y 1 B LYS 28 ? CG ? B LYS 29 CG 25 1 Y 1 B LYS 28 ? CD ? B LYS 29 CD 26 1 Y 1 B LYS 28 ? CE ? B LYS 29 CE 27 1 Y 1 B LYS 28 ? NZ ? B LYS 29 NZ 28 1 Y 1 B LYS 30 ? CD ? B LYS 31 CD 29 1 Y 1 B LYS 30 ? CE ? B LYS 31 CE 30 1 Y 1 B LYS 30 ? NZ ? B LYS 31 NZ 31 1 Y 1 B GLU 31 ? OE1 ? B GLU 32 OE1 32 1 Y 1 B GLU 31 ? OE2 ? B GLU 32 OE2 33 1 Y 1 B GLU 34 ? CD ? B GLU 35 CD 34 1 Y 1 B GLU 34 ? OE1 ? B GLU 35 OE1 35 1 Y 1 B GLU 34 ? OE2 ? B GLU 35 OE2 36 1 Y 1 B LYS 38 ? CE ? B LYS 39 CE 37 1 Y 1 B LYS 38 ? NZ ? B LYS 39 NZ 38 1 Y 1 B ASP 39 ? OD1 ? B ASP 40 OD1 39 1 Y 1 B ASP 39 ? OD2 ? B ASP 40 OD2 40 1 Y 1 B ARG 49 ? CZ ? B ARG 50 CZ 41 1 Y 1 B ARG 49 ? NH1 ? B ARG 50 NH1 42 1 Y 1 B ARG 49 ? NH2 ? B ARG 50 NH2 43 1 Y 1 B GLU 53 ? CD ? B GLU 54 CD 44 1 Y 1 B GLU 53 ? OE1 ? B GLU 54 OE1 45 1 Y 1 B GLU 53 ? OE2 ? B GLU 54 OE2 46 1 Y 1 B LYS 57 ? CD ? B LYS 58 CD 47 1 Y 1 B LYS 57 ? CE ? B LYS 58 CE 48 1 Y 1 B LYS 57 ? NZ ? B LYS 58 NZ 49 1 Y 1 B GLN 64 ? CD ? B GLN 65 CD 50 1 Y 1 B GLN 64 ? OE1 ? B GLN 65 OE1 51 1 Y 1 B GLN 64 ? NE2 ? B GLN 65 NE2 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id GLY _pdbx_unobs_or_zero_occ_residues.auth_seq_id 0 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id GLY _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ISOPROPYL ALCOHOL' IPA 3 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #