HEADER LYASE 01-MAR-06 2G85 TITLE CRYSTAL STRUCTURE OF CHORISMATE SYNTHASE FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS AT 2.22 ANGSTRONS OF RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHORISMATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PHOSPHOLYASE; COMPND 5 EC: 4.2.3.5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: AROC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-ALPHA-BETA, SHIKIMATE PATHWAY, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.V.B.DIAS,B.B.DOS SANTOS,F.ELY,L.A.BASSO,D.S.SANTOS,W.F.DE AZEVEDO AUTHOR 2 JR. REVDAT 4 25-OCT-23 2G85 1 REMARK REVDAT 3 13-JUL-11 2G85 1 VERSN REVDAT 2 24-FEB-09 2G85 1 VERSN REVDAT 1 01-MAR-07 2G85 0 JRNL AUTH M.V.B.DIAS,B.B.DOS SANTOS,F.ELY,L.A.BASSO,D.S.SANTOS, JRNL AUTH 2 W.F.DE AZEVEDO JR. JRNL TITL CRYSTAL STRUCTURE OF CHORISMATE SYNTHASE FROM MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS AT 2.22 ANGSTRON OF RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 35623 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1873 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.22 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2320 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 122 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2829 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 421 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.151 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.059 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2875 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3905 ; 2.286 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 384 ; 8.730 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 119 ;32.781 ;22.437 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 445 ;22.299 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;26.510 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 447 ; 0.204 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2209 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1762 ; 0.305 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1989 ; 0.326 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 411 ; 0.330 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 210 ; 0.307 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 78 ; 0.455 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1937 ; 1.485 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3030 ; 2.389 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1016 ; 3.972 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 875 ; 6.025 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2G85 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000036808. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : D03B-MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.427 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37564 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.220 REMARK 200 RESOLUTION RANGE LOW (A) : 50.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 22.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1ZTB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES-NA PH 7.8 BUFFER, 4M SODIM REMARK 280 CHLORATE , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.65000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 105.30000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.65000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 105.30000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.65000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 105.30000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 52.65000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 105.30000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 26300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -113.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 130.28800 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 157.95000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 130.28800 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 157.95000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 754 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 46 REMARK 465 GLY A 47 REMARK 465 ALA A 48 REMARK 465 ARG A 49 REMARK 465 MET A 50 REMARK 465 THR A 51 REMARK 465 GLU A 393 REMARK 465 ALA A 394 REMARK 465 PRO A 395 REMARK 465 ALA A 396 REMARK 465 ALA A 397 REMARK 465 ARG A 398 REMARK 465 VAL A 399 REMARK 465 SER A 400 REMARK 465 GLY A 401 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 425 O HOH A 817 1.09 REMARK 500 O ASP A 190 N SER A 192 1.18 REMARK 500 O HOH A 714 O HOH A 740 1.20 REMARK 500 O HOH A 608 O HOH A 820 1.29 REMARK 500 NH2 ARG A 243 O HOH A 711 1.39 REMARK 500 CB ASP A 245 O HOH A 722 1.46 REMARK 500 O HOH A 819 O HOH A 820 1.58 REMARK 500 O HOH A 543 O HOH A 721 1.61 REMARK 500 O ALA A 56 O HOH A 599 1.62 REMARK 500 NH1 ARG A 290 O HOH A 479 1.65 REMARK 500 NH1 ARG A 40 OG1 THR A 141 1.73 REMARK 500 O ILE A 189 C ASP A 190 1.74 REMARK 500 O HOH A 807 O HOH A 816 1.80 REMARK 500 O HOH A 548 O HOH A 798 1.81 REMARK 500 CB ALA A 188 O HOH A 752 1.82 REMARK 500 O HOH A 608 O HOH A 819 1.83 REMARK 500 CG2 ILE A 317 O HOH A 749 1.85 REMARK 500 O HOH A 597 O HOH A 772 1.86 REMARK 500 O ILE A 189 N ALA A 191 1.88 REMARK 500 NE ARG A 40 O HOH A 702 1.88 REMARK 500 CZ ARG A 243 O HOH A 711 1.90 REMARK 500 CB ALA A 188 O HOH A 751 1.90 REMARK 500 O HOH A 582 O HOH A 818 1.94 REMARK 500 CG ASP A 245 O HOH A 722 1.94 REMARK 500 NE ARG A 290 O HOH A 410 1.95 REMARK 500 CB ILE A 168 O HOH A 428 1.98 REMARK 500 O HOH A 610 O HOH A 819 1.99 REMARK 500 NE ARG A 243 O HOH A 711 2.00 REMARK 500 NH2 ARG A 40 O HOH A 702 2.00 REMARK 500 OD1 ASP A 245 O HOH A 722 2.03 REMARK 500 O HOH A 573 O HOH A 720 2.05 REMARK 500 O HOH A 570 O HOH A 789 2.05 REMARK 500 O HOH A 559 O HOH A 779 2.05 REMARK 500 CD PRO A 187 O HOH A 485 2.06 REMARK 500 C ASP A 190 N SER A 192 2.09 REMARK 500 O HOH A 805 O HOH A 806 2.11 REMARK 500 O HOH A 803 O HOH A 804 2.12 REMARK 500 O HOH A 595 O HOH A 769 2.12 REMARK 500 O HOH A 536 O HOH A 736 2.13 REMARK 500 CG GLN A 386 O HOH A 705 2.14 REMARK 500 NH1 ARG A 3 O HOH A 744 2.15 REMARK 500 CG1 ILE A 189 O HOH A 682 2.16 REMARK 500 O HOH A 783 O HOH A 784 2.16 REMARK 500 O HOH A 792 O HOH A 800 2.18 REMARK 500 CD ARG A 380 O HOH A 530 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 110 NH2 ARG A 110 12545 1.31 REMARK 500 O HOH A 710 O HOH A 723 4655 1.51 REMARK 500 O HOH A 472 O HOH A 709 4655 1.60 REMARK 500 N ARG A 322 O HOH A 759 12545 1.63 REMARK 500 O HOH A 537 O HOH A 704 8556 1.95 REMARK 500 NH1 ARG A 243 O HOH A 710 4655 1.99 REMARK 500 OE1 GLU A 20 O HOH A 746 8556 2.02 REMARK 500 O HOH A 737 O HOH A 755 8556 2.09 REMARK 500 O HOH A 539 O HOH A 755 8556 2.12 REMARK 500 O HOH A 535 O HOH A 755 8556 2.13 REMARK 500 O HOH A 537 O HOH A 755 8556 2.15 REMARK 500 O HOH A 783 O HOH A 783 11656 2.16 REMARK 500 O HOH A 466 O HOH A 763 11656 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 28 CB - CA - C ANGL. DEV. = -12.8 DEGREES REMARK 500 ASP A 55 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 LEU A 133 CA - CB - CG ANGL. DEV. = 17.4 DEGREES REMARK 500 ARG A 135 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 135 NE - CZ - NH2 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 144 CD - NE - CZ ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG A 144 NE - CZ - NH1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 144 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG A 152 NE - CZ - NH1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 152 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ILE A 168 CG1 - CB - CG2 ANGL. DEV. = -20.3 DEGREES REMARK 500 LEU A 186 CA - CB - CG ANGL. DEV. = -15.1 DEGREES REMARK 500 ASP A 190 CB - CG - OD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ALA A 191 N - CA - C ANGL. DEV. = -17.8 DEGREES REMARK 500 ARG A 195 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 195 NE - CZ - NH2 ANGL. DEV. = -7.9 DEGREES REMARK 500 ASP A 245 N - CA - CB ANGL. DEV. = -12.1 DEGREES REMARK 500 ASP A 245 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG A 294 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 309 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 309 NE - CZ - NH2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ILE A 317 CB - CA - C ANGL. DEV. = -12.5 DEGREES REMARK 500 ARG A 364 NE - CZ - NH1 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 364 NE - CZ - NH2 ANGL. DEV. = 4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 44 100.28 -35.81 REMARK 500 GLU A 53 -96.98 -64.41 REMARK 500 ALA A 56 79.57 -64.75 REMARK 500 ASP A 190 -75.86 -17.88 REMARK 500 ALA A 191 -71.92 19.63 REMARK 500 ALA A 257 -10.48 78.09 REMARK 500 PRO A 321 -51.70 -29.11 REMARK 500 ASP A 391 46.92 -77.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 52 GLU A 53 124.51 REMARK 500 ALA A 56 VAL A 57 122.03 REMARK 500 PRO A 180 PRO A 181 149.14 REMARK 500 ILE A 189 ASP A 190 -138.82 REMARK 500 ASP A 190 ALA A 191 -143.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DFN RELATED DB: PDB REMARK 900 RELATED ID: 2DFT RELATED DB: PDB DBREF 2G85 A 1 401 UNP P63611 AROC_MYCTU 1 401 SEQRES 1 A 401 MET LEU ARG TRP ILE THR ALA GLY GLU SER HIS GLY ARG SEQRES 2 A 401 ALA LEU VAL ALA VAL VAL GLU GLY MET VAL ALA GLY VAL SEQRES 3 A 401 HIS VAL THR SER ALA ASP ILE ALA ASP GLN LEU ALA ARG SEQRES 4 A 401 ARG ARG LEU GLY TYR GLY ARG GLY ALA ARG MET THR PHE SEQRES 5 A 401 GLU ARG ASP ALA VAL THR VAL LEU SER GLY ILE ARG HIS SEQRES 6 A 401 GLY SER THR LEU GLY GLY PRO ILE ALA ILE GLU ILE GLY SEQRES 7 A 401 ASN THR GLU TRP PRO LYS TRP GLU THR VAL MET ALA ALA SEQRES 8 A 401 ASP PRO VAL ASP PRO ALA GLU LEU ALA ASP VAL ALA ARG SEQRES 9 A 401 ASN ALA PRO LEU THR ARG PRO ARG PRO GLY HIS ALA ASP SEQRES 10 A 401 TYR ALA GLY MET LEU LYS TYR GLY PHE ASP ASP ALA ARG SEQRES 11 A 401 PRO VAL LEU GLU ARG ALA SER ALA ARG GLU THR ALA ALA SEQRES 12 A 401 ARG VAL ALA ALA GLY THR VAL ALA ARG ALA PHE LEU ARG SEQRES 13 A 401 GLN ALA LEU GLY VAL GLU VAL LEU SER HIS VAL ILE SER SEQRES 14 A 401 ILE GLY ALA SER ALA PRO TYR GLU GLY PRO PRO PRO ARG SEQRES 15 A 401 ALA GLU ASP LEU PRO ALA ILE ASP ALA SER PRO VAL ARG SEQRES 16 A 401 ALA TYR ASP LYS ALA ALA GLU ALA ASP MET ILE ALA GLN SEQRES 17 A 401 ILE GLU ALA ALA LYS LYS ASP GLY ASP THR LEU GLY GLY SEQRES 18 A 401 VAL VAL GLU ALA VAL ALA LEU GLY LEU PRO VAL GLY LEU SEQRES 19 A 401 GLY SER PHE THR SER GLY ASP HIS ARG LEU ASP SER GLN SEQRES 20 A 401 LEU ALA ALA ALA VAL MET GLY ILE GLN ALA ILE LYS GLY SEQRES 21 A 401 VAL GLU ILE GLY ASP GLY PHE GLN THR ALA ARG ARG ARG SEQRES 22 A 401 GLY SER ARG ALA HIS ASP GLU MET TYR PRO GLY PRO ASP SEQRES 23 A 401 GLY VAL VAL ARG SER THR ASN ARG ALA GLY GLY LEU GLU SEQRES 24 A 401 GLY GLY MET THR ASN GLY GLN PRO LEU ARG VAL ARG ALA SEQRES 25 A 401 ALA MET LYS PRO ILE SER THR VAL PRO ARG ALA LEU ALA SEQRES 26 A 401 THR VAL ASP LEU ALA THR GLY ASP GLU ALA VAL ALA ILE SEQRES 27 A 401 HIS GLN ARG SER ASP VAL CYS ALA VAL PRO ALA ALA GLY SEQRES 28 A 401 VAL VAL VAL GLU THR MET VAL ALA LEU VAL LEU ALA ARG SEQRES 29 A 401 ALA ALA LEU GLU LYS PHE GLY GLY ASP SER LEU ALA GLU SEQRES 30 A 401 THR GLN ARG ASN ILE ALA ALA TYR GLN ARG SER VAL ALA SEQRES 31 A 401 ASP ARG GLU ALA PRO ALA ALA ARG VAL SER GLY FORMUL 2 HOH *421(H2 O) HELIX 1 1 THR A 29 ARG A 40 1 12 HELIX 2 2 GLU A 81 TRP A 85 5 5 HELIX 3 3 PRO A 96 ASP A 101 1 6 HELIX 4 4 ALA A 116 GLY A 125 1 10 HELIX 5 5 ALA A 129 SER A 137 1 9 HELIX 6 6 ARG A 139 GLY A 160 1 22 HELIX 7 7 PRO A 181 ALA A 183 5 3 HELIX 8 8 GLU A 184 ILE A 189 1 6 HELIX 9 9 ASP A 198 ASP A 215 1 18 HELIX 10 10 SER A 239 HIS A 242 5 4 HELIX 11 11 ARG A 243 GLY A 254 1 12 HELIX 12 12 ASP A 265 ALA A 270 1 6 HELIX 13 13 ARG A 273 HIS A 278 1 6 HELIX 14 14 ALA A 346 GLY A 371 1 26 HELIX 15 15 SER A 374 ASP A 391 1 18 SHEET 1 A 4 ARG A 3 ALA A 7 0 SHEET 2 A 4 ALA A 14 GLU A 20 -1 O VAL A 18 N ILE A 5 SHEET 3 A 4 ILE A 73 GLY A 78 -1 O ILE A 77 N LEU A 15 SHEET 4 A 4 THR A 58 SER A 61 -1 N THR A 58 O GLU A 76 SHEET 1 B 2 ILE A 63 ARG A 64 0 SHEET 2 B 2 SER A 67 THR A 68 -1 O SER A 67 N ARG A 64 SHEET 1 C 4 GLU A 162 ILE A 170 0 SHEET 2 C 4 GLY A 221 LEU A 228 -1 O VAL A 226 N LEU A 164 SHEET 3 C 4 LEU A 308 MET A 314 -1 O VAL A 310 N ALA A 225 SHEET 4 C 4 ILE A 258 ILE A 263 -1 N LYS A 259 O ALA A 313 SHEET 1 D 2 LEU A 298 GLU A 299 0 SHEET 2 D 2 MET A 302 THR A 303 -1 O MET A 302 N GLU A 299 SHEET 1 E 2 ALA A 325 VAL A 327 0 SHEET 2 E 2 GLU A 334 VAL A 336 -1 O ALA A 335 N THR A 326 CISPEP 1 TYR A 44 GLY A 45 0 11.31 CRYST1 130.288 130.288 157.950 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007675 0.004431 0.000000 0.00000 SCALE2 0.000000 0.008863 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006331 0.00000