data_2G9J # _entry.id 2G9J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.350 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2G9J pdb_00002g9j 10.2210/pdb2g9j/pdb RCSB RCSB036858 ? ? WWPDB D_1000036858 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1TMZ ;Structure of a two-chain coiled coil containing the first 14 residues of the N terminus of muscle tropomyosins and the last 18 residues of the C terminus of the yeast transcription GCN4. The peptide is acetylated at the N terminus. ; unspecified PDB 1MV4 ;Two-chain coiled-coil synthetic molecule containing residues 251-284 of the C terminus of tropomyosin with GlyCysGly are at the N-terminus. The cystines are linked by a disulfide. ; unspecified TargetDB OR9 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2G9J _pdbx_database_status.recvd_initial_deposition_date 2006-03-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Greenfield, N.J.' 1 'Huang, Y.J.' 2 'Swapna, G.V.T.' 3 'Bhattacharya, A.' 4 'Singh, A.' 5 'Montelione, G.T.' 6 'Hitchcock-DeGregori, S.E.' 7 'Northeast Structural Genomics Consortium (NESG)' 8 # _citation.id primary _citation.title 'Solution NMR Structure of the Junction between Tropomyosin Molecules: Implications for Actin Binding and Regulation.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 364 _citation.page_first 80 _citation.page_last 96 _citation.year 2006 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16999976 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2006.08.033 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Greenfield, N.J.' 1 ? primary 'Huang, Y.J.' 2 ? primary 'Swapna, G.V.' 3 ? primary 'Bhattacharya, A.' 4 ? primary 'Rapp, B.' 5 ? primary 'Singh, A.' 6 ? primary 'Montelione, G.T.' 7 ? primary 'Hitchcock-Degregori, S.E.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Tropomyosin 1 alpha chain' 4177.707 2 ? N279K 'TM9a(251-284)' ;This peptide is the product of a synthetic gene. It contains GCG at the N terminus followed by residues 251-284 of rat striated tropomyosin. The peptide has the mutation N279K ; 2 polymer man 'Tropomyosin 1 alpha chain/General control protein GCN4' 3909.709 2 ? ? 'TM1a(1-14)Zip' ;This peptide is the product of a synthetic gene. It contains a gly at the N terminus followed by the first 14 residues of rat striated tropomyosin and the last 18 residues of yeast GCN4 ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GCGKSIDDLEDELYAQKLKYKAISEELDHALKDMTSI GCGKSIDDLEDELYAQKLKYKAISEELDHALKDMTSI C,D OR9 2 'polypeptide(L)' no no GMDAIKKKMQMLKLDNYHLENEVARLKKLVGER GMDAIKKKMQMLKLDNYHLENEVARLKKLVGER A,B OR9 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 CYS n 1 3 GLY n 1 4 LYS n 1 5 SER n 1 6 ILE n 1 7 ASP n 1 8 ASP n 1 9 LEU n 1 10 GLU n 1 11 ASP n 1 12 GLU n 1 13 LEU n 1 14 TYR n 1 15 ALA n 1 16 GLN n 1 17 LYS n 1 18 LEU n 1 19 LYS n 1 20 TYR n 1 21 LYS n 1 22 ALA n 1 23 ILE n 1 24 SER n 1 25 GLU n 1 26 GLU n 1 27 LEU n 1 28 ASP n 1 29 HIS n 1 30 ALA n 1 31 LEU n 1 32 LYS n 1 33 ASP n 1 34 MET n 1 35 THR n 1 36 SER n 1 37 ILE n 2 1 GLY n 2 2 MET n 2 3 ASP n 2 4 ALA n 2 5 ILE n 2 6 LYS n 2 7 LYS n 2 8 LYS n 2 9 MET n 2 10 GLN n 2 11 MET n 2 12 LEU n 2 13 LYS n 2 14 LEU n 2 15 ASP n 2 16 ASN n 2 17 TYR n 2 18 HIS n 2 19 LEU n 2 20 GLU n 2 21 ASN n 2 22 GLU n 2 23 VAL n 2 24 ALA n 2 25 ARG n 2 26 LEU n 2 27 LYS n 2 28 LYS n 2 29 LEU n 2 30 VAL n 2 31 GLY n 2 32 GLU n 2 33 ARG n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? 'Norway rat' Rattus TPM1 ? ? ? ? ? ? 'Rattus norvegicus' 10116 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? 'BL21(DE3) pLysS' ? ? ? ? ? ? ? pSBET-HTb ? ? ? 'Pproex Hta' ? ? 2 1 sample ? ? ? ;Norway rat, baker's yeast ; 'Rattus, Saccharomyces' TPM1 , , ? ? ? ? 'Rattus norvegicus, Saccharomyces cerevisiae' 10116,4932 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? 'BL21(DE3) pLysS' ? ? ? ? ? ? ? 'pProEX HTb' ? ? ? 'pSBETc, pET3a, and pET11a cut with NdeI and BamHI' ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP TPM1_RAT Q63609 2 MDAIKKKMQMLKLD 1 ? 2 UNP GCN4_YEAST P03069 2 NYHLENEVARLKKLVGER 264 ? 3 UNP TPM1_RAT Q63609 1 KSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 251 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2G9J A 2 ? 15 ? Q63609 1 ? 14 ? 1 14 2 2 2G9J A 16 ? 33 ? P03069 264 ? 281 ? 15 32 3 1 2G9J B 2 ? 15 ? Q63609 1 ? 14 ? 1 14 4 2 2G9J B 16 ? 33 ? P03069 264 ? 281 ? 15 32 5 3 2G9J C 4 ? 37 ? Q63609 251 ? 284 ? 251 284 6 3 2G9J D 4 ? 37 ? Q63609 251 ? 284 ? 251 284 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2G9J GLY A 1 ? UNP Q63609 ? ? 'cloning artifact' 0 1 3 2G9J GLY B 1 ? UNP Q63609 ? ? 'cloning artifact' 0 2 5 2G9J GLY C 1 ? UNP Q63609 ? ? 'cloning artifact' 248 3 5 2G9J CYS C 2 ? UNP Q63609 ? ? 'cloning artifact' 249 4 5 2G9J GLY C 3 ? UNP Q63609 ? ? 'cloning artifact' 250 5 5 2G9J LYS C 32 ? UNP Q63609 ASN 279 'engineered mutation' 279 6 6 2G9J GLY D 1 ? UNP Q63609 ? ? 'cloning artifact' 248 7 6 2G9J CYS D 2 ? UNP Q63609 ? ? 'cloning artifact' 249 8 6 2G9J GLY D 3 ? UNP Q63609 ? ? 'cloning artifact' 250 9 6 2G9J LYS D 32 ? UNP Q63609 ASN 279 'engineered mutation' 279 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_15N-separated_NOESY 2 3 1 3D_13C-separated_NOESY 2 4 1 '13C X-filtered NOESY' 3 5 1 '3D_15N-separated NOESY' 4 6 1 3D_13C-separated_NOESY 4 7 1 '13C X-filtered NOESY' 5 8 1 '13C X-filtered NOESY' 6 9 1 '13C X-filtered NOESY' 7 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 10 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.14 _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '1mM complex of TM1a(1-14)Zip U-15N withTM9a(251-284)U15N, 100 mM NaCl, 10 mM sodium phospate 10% deuterium oxide pH 6.5' '100 mM NaCl, 10 mM sodium phospate 10% deuterium oxide pH 6.5' 2 '1mM complex of TM1a(1-14)Zip U15N/U13C with TM9a(251-284) unlabled, 100 mM NaCl, 10 mM sodium phospate 10% deuterium oxide pH 6.5' '100 mM NaCl, 10 mM sodium phospate 10% deuterium oxide pH 6.5' 3 '1mM complex of TM1a(1-14)Zip U15N/U13C with TM9a(251-284) unlabled, 100 mM NaCl, 10 mM sodium phospate 99.9% deuterium oxide pH 6.5' '100 mM NaCl, 10 mM sodium phospate 99.9% deuterium oxide pH 6.5' 4 ;1mM complex of TM1a(1-14)Zip unlabeled with TM9a(251-284)U15N/U13C, 100 mM NaCl, 10 mM sodium phospate 10% deuterium oxide pH 6.5 or in 99.9% deuterium oxide ; '100 mM NaCl, 10 mM sodium phospate 10% deuterium oxide pH 6.5 or in 99.9% deuterium oxide' 5 ;1mM complex of TM1a(1-14)Zip unlabeled with TM9a(251-284)U15N/U13C, 100 mM NaCl, 10 mM sodium phospate 10% deuterium oxide 99.9% deuterium oxide, pH 6.5 ; '100 mM NaCl, 10 mM sodium phospate 10% deuterium oxide 99.9% deuterium oxide, pH 6.5' 6 ;1mM complex of TM1a(1-14), one chain labeled U15N/U13C the other chain unlabeled, with unlabeled TM9a(251-284), 100 mM NaCl, 10 mM sodium phospate 10% deuterium oxide pH 6.5 ; '100 mM NaCl, 10 mM sodium phospate 10% deuterium oxide pH 6.5' 7 ;1mM complex of TM9a(251-284), one chain labeled U15N/U13C the other chain unlabeled, with unlabele TM1a(1-14)Zip, 100 mM NaCl, 10 mM sodium phospate 10% deuterium oxide pH 6.5 ; '100 mM NaCl, 10 mM sodium phospate 10% deuterium oxide pH 6.5' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 INOVA Varian 500 ? 2 INOVA Varian 600 ? 3 AVANCE Bruker 600 ? # _pdbx_nmr_refine.entry_id 2G9J _pdbx_nmr_refine.method ;Initail structure was calculated with Torsion Angle Dynamics and refined with simulated annealing and included a term for explicit solvent in the refinement protocol. ; _pdbx_nmr_refine.details ;The structures were based on a total of 2630 restraints, 2198 conformationally restricting NOEs, 232 dihedral angle constraints and 200 hydrogen bond constraints ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2G9J _pdbx_nmr_ensemble.conformers_calculated_total_number 196 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria ;10 structures from initial DYANA calcultions with the lowest target functions were refined using CNS. The structures back calculated data agree with experimental NOESY spectra. The structures have acceptable covalent geometry, favorable non-bond energy, the lowest energy and the fewest restraint violations. ; _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2G9J _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal 'data analysis' AutoStructure Custom Huang 1 'structure solution' DYANA 1.5 Guntert 2 collection VNMR '6.1 c' Varian 3 processing NMRPipe 2005 Delaglio 4 refinement CNS 1.1 Brunger 5 'data analysis' Sparky 3.74 Goddard 6 collection XwinNMR '3.5 pl 6' Bruker 7 # _exptl.entry_id 2G9J _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 2G9J _struct.title ;Complex of TM1a(1-14)Zip with TM9a(251-284): a model for the polymerization domain ("overlap region") of tropomyosin, Northeast Structural Genomics Target OR9 ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2G9J _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' _struct_keywords.text ;TROPOMYOSIN, PEPTIDE COMPLEX, OVERLAP COMPLEX, INTERMOLECULAR JUNCTION, N-TERMINAL:C-TERMINAL INTERFACE, PARALLEL COILED COIL, POLYMERIZATION DOMAIN, STRUCTURAL PROTEIN, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 5 ? MET A 34 ? SER C 252 MET C 281 1 ? 30 HELX_P HELX_P2 2 MET B 2 ? ARG B 33 ? MET A 1 ARG A 32 1 ? 32 HELX_P HELX_P3 3 LYS C 4 ? THR C 35 ? LYS D 251 THR D 282 1 ? 32 HELX_P HELX_P4 4 MET D 2 ? ARG D 33 ? MET B 1 ARG B 32 1 ? 32 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 2G9J _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2G9J _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 248 248 GLY GLY C . n A 1 2 CYS 2 249 249 CYS CYS C . n A 1 3 GLY 3 250 250 GLY GLY C . n A 1 4 LYS 4 251 251 LYS LYS C . n A 1 5 SER 5 252 252 SER SER C . n A 1 6 ILE 6 253 253 ILE ILE C . n A 1 7 ASP 7 254 254 ASP ASP C . n A 1 8 ASP 8 255 255 ASP ASP C . n A 1 9 LEU 9 256 256 LEU LEU C . n A 1 10 GLU 10 257 257 GLU GLU C . n A 1 11 ASP 11 258 258 ASP ASP C . n A 1 12 GLU 12 259 259 GLU GLU C . n A 1 13 LEU 13 260 260 LEU LEU C . n A 1 14 TYR 14 261 261 TYR TYR C . n A 1 15 ALA 15 262 262 ALA ALA C . n A 1 16 GLN 16 263 263 GLN GLN C . n A 1 17 LYS 17 264 264 LYS LYS C . n A 1 18 LEU 18 265 265 LEU LEU C . n A 1 19 LYS 19 266 266 LYS LYS C . n A 1 20 TYR 20 267 267 TYR TYR C . n A 1 21 LYS 21 268 268 LYS LYS C . n A 1 22 ALA 22 269 269 ALA ALA C . n A 1 23 ILE 23 270 270 ILE ILE C . n A 1 24 SER 24 271 271 SER SER C . n A 1 25 GLU 25 272 272 GLU GLU C . n A 1 26 GLU 26 273 273 GLU GLU C . n A 1 27 LEU 27 274 274 LEU LEU C . n A 1 28 ASP 28 275 275 ASP ASP C . n A 1 29 HIS 29 276 276 HIS HIS C . n A 1 30 ALA 30 277 277 ALA ALA C . n A 1 31 LEU 31 278 278 LEU LEU C . n A 1 32 LYS 32 279 279 LYS LYS C . n A 1 33 ASP 33 280 280 ASP ASP C . n A 1 34 MET 34 281 281 MET MET C . n A 1 35 THR 35 282 282 THR THR C . n A 1 36 SER 36 283 283 SER SER C . n A 1 37 ILE 37 284 284 ILE ILE C . n B 2 1 GLY 1 0 0 GLY GLY A . n B 2 2 MET 2 1 1 MET MET A . n B 2 3 ASP 3 2 2 ASP ASP A . n B 2 4 ALA 4 3 3 ALA ALA A . n B 2 5 ILE 5 4 4 ILE ILE A . n B 2 6 LYS 6 5 5 LYS LYS A . n B 2 7 LYS 7 6 6 LYS LYS A . n B 2 8 LYS 8 7 7 LYS LYS A . n B 2 9 MET 9 8 8 MET MET A . n B 2 10 GLN 10 9 9 GLN GLN A . n B 2 11 MET 11 10 10 MET MET A . n B 2 12 LEU 12 11 11 LEU LEU A . n B 2 13 LYS 13 12 12 LYS LYS A . n B 2 14 LEU 14 13 13 LEU LEU A . n B 2 15 ASP 15 14 14 ASP ASP A . n B 2 16 ASN 16 15 15 ASN ASN A . n B 2 17 TYR 17 16 16 TYR TYR A . n B 2 18 HIS 18 17 17 HIS HIS A . n B 2 19 LEU 19 18 18 LEU LEU A . n B 2 20 GLU 20 19 19 GLU GLU A . n B 2 21 ASN 21 20 20 ASN ASN A . n B 2 22 GLU 22 21 21 GLU GLU A . n B 2 23 VAL 23 22 22 VAL VAL A . n B 2 24 ALA 24 23 23 ALA ALA A . n B 2 25 ARG 25 24 24 ARG ARG A . n B 2 26 LEU 26 25 25 LEU LEU A . n B 2 27 LYS 27 26 26 LYS LYS A . n B 2 28 LYS 28 27 27 LYS LYS A . n B 2 29 LEU 29 28 28 LEU LEU A . n B 2 30 VAL 30 29 29 VAL VAL A . n B 2 31 GLY 31 30 30 GLY GLY A . n B 2 32 GLU 32 31 31 GLU GLU A . n B 2 33 ARG 33 32 32 ARG ARG A . n C 1 1 GLY 1 248 248 GLY GLY D . n C 1 2 CYS 2 249 249 CYS CYS D . n C 1 3 GLY 3 250 250 GLY GLY D . n C 1 4 LYS 4 251 251 LYS LYS D . n C 1 5 SER 5 252 252 SER SER D . n C 1 6 ILE 6 253 253 ILE ILE D . n C 1 7 ASP 7 254 254 ASP ASP D . n C 1 8 ASP 8 255 255 ASP ASP D . n C 1 9 LEU 9 256 256 LEU LEU D . n C 1 10 GLU 10 257 257 GLU GLU D . n C 1 11 ASP 11 258 258 ASP ASP D . n C 1 12 GLU 12 259 259 GLU GLU D . n C 1 13 LEU 13 260 260 LEU LEU D . n C 1 14 TYR 14 261 261 TYR TYR D . n C 1 15 ALA 15 262 262 ALA ALA D . n C 1 16 GLN 16 263 263 GLN GLN D . n C 1 17 LYS 17 264 264 LYS LYS D . n C 1 18 LEU 18 265 265 LEU LEU D . n C 1 19 LYS 19 266 266 LYS LYS D . n C 1 20 TYR 20 267 267 TYR TYR D . n C 1 21 LYS 21 268 268 LYS LYS D . n C 1 22 ALA 22 269 269 ALA ALA D . n C 1 23 ILE 23 270 270 ILE ILE D . n C 1 24 SER 24 271 271 SER SER D . n C 1 25 GLU 25 272 272 GLU GLU D . n C 1 26 GLU 26 273 273 GLU GLU D . n C 1 27 LEU 27 274 274 LEU LEU D . n C 1 28 ASP 28 275 275 ASP ASP D . n C 1 29 HIS 29 276 276 HIS HIS D . n C 1 30 ALA 30 277 277 ALA ALA D . n C 1 31 LEU 31 278 278 LEU LEU D . n C 1 32 LYS 32 279 279 LYS LYS D . n C 1 33 ASP 33 280 280 ASP ASP D . n C 1 34 MET 34 281 281 MET MET D . n C 1 35 THR 35 282 282 THR THR D . n C 1 36 SER 36 283 283 SER SER D . n C 1 37 ILE 37 284 284 ILE ILE D . n D 2 1 GLY 1 0 0 GLY GLY B . n D 2 2 MET 2 1 1 MET MET B . n D 2 3 ASP 3 2 2 ASP ASP B . n D 2 4 ALA 4 3 3 ALA ALA B . n D 2 5 ILE 5 4 4 ILE ILE B . n D 2 6 LYS 6 5 5 LYS LYS B . n D 2 7 LYS 7 6 6 LYS LYS B . n D 2 8 LYS 8 7 7 LYS LYS B . n D 2 9 MET 9 8 8 MET MET B . n D 2 10 GLN 10 9 9 GLN GLN B . n D 2 11 MET 11 10 10 MET MET B . n D 2 12 LEU 12 11 11 LEU LEU B . n D 2 13 LYS 13 12 12 LYS LYS B . n D 2 14 LEU 14 13 13 LEU LEU B . n D 2 15 ASP 15 14 14 ASP ASP B . n D 2 16 ASN 16 15 15 ASN ASN B . n D 2 17 TYR 17 16 16 TYR TYR B . n D 2 18 HIS 18 17 17 HIS HIS B . n D 2 19 LEU 19 18 18 LEU LEU B . n D 2 20 GLU 20 19 19 GLU GLU B . n D 2 21 ASN 21 20 20 ASN ASN B . n D 2 22 GLU 22 21 21 GLU GLU B . n D 2 23 VAL 23 22 22 VAL VAL B . n D 2 24 ALA 24 23 23 ALA ALA B . n D 2 25 ARG 25 24 24 ARG ARG B . n D 2 26 LEU 26 25 25 LEU LEU B . n D 2 27 LYS 27 26 26 LYS LYS B . n D 2 28 LYS 28 27 27 LYS LYS B . n D 2 29 LEU 29 28 28 LEU LEU B . n D 2 30 VAL 30 29 29 VAL VAL B . n D 2 31 GLY 31 30 30 GLY GLY B . n D 2 32 GLU 32 31 31 GLU GLU B . n D 2 33 ARG 33 32 32 ARG ARG B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.initial_of_center NESG # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-11-07 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-10-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OXT C ILE 284 ? ? HZ2 A LYS 7 ? ? 1.55 2 1 HZ2 A LYS 12 ? ? OXT D ILE 284 ? ? 1.58 3 2 HA A ASP 14 ? ? HD2 A HIS 17 ? ? 1.20 4 2 HZ1 C LYS 264 ? ? OE1 D GLU 259 ? ? 1.57 5 2 HH12 A ARG 32 ? ? OXT B ARG 32 ? ? 1.57 6 2 H1 C GLY 248 ? ? OE1 D GLU 257 ? ? 1.58 7 2 H2 A GLY 0 ? ? OD1 A ASP 2 ? ? 1.59 8 3 OXT D ILE 284 ? ? HZ3 B LYS 7 ? ? 1.53 9 3 HZ2 C LYS 264 ? ? OE2 D GLU 259 ? ? 1.56 10 3 HZ1 A LYS 26 ? ? OE2 B GLU 21 ? ? 1.59 11 5 HG C LEU 274 ? ? HE1 B MET 1 ? ? 1.15 12 5 HA C CYS 249 ? ? HG12 C ILE 253 ? ? 1.22 13 5 H2 A GLY 0 ? ? OE2 D GLU 273 ? ? 1.55 14 5 HZ2 C LYS 264 ? ? OE2 D GLU 259 ? ? 1.57 15 5 HZ2 A LYS 26 ? ? OE2 B GLU 21 ? ? 1.60 16 6 HG D LEU 260 ? ? HE3 D LYS 264 ? ? 1.28 17 6 OE2 A GLU 21 ? ? HZ2 B LYS 26 ? ? 1.57 18 6 O D MET 281 ? ? HG1 D THR 282 ? ? 1.57 19 7 HB3 A MET 1 ? ? HZ2 A LYS 5 ? ? 1.27 20 8 HG3 C MET 281 ? ? HZ2 B LYS 5 ? ? 1.29 21 8 O C MET 281 ? ? HG1 C THR 282 ? ? 1.56 22 9 HZ3 C LYS 268 ? ? OE1 C GLU 272 ? ? 1.57 23 9 OE1 C GLU 273 ? ? H1 B GLY 0 ? ? 1.59 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS C 251 ? ? -151.53 -73.85 2 1 MET C 281 ? ? -94.35 49.44 3 1 LYS D 251 ? ? -146.14 -51.50 4 1 THR D 282 ? ? 58.64 -8.46 5 1 ALA B 3 ? ? -52.77 -71.26 6 2 LYS C 251 ? ? 68.50 79.99 7 2 SER C 252 ? ? 171.78 -28.86 8 2 THR C 282 ? ? 54.99 -69.73 9 2 CYS D 249 ? ? -150.83 -35.90 10 2 LYS D 251 ? ? -149.09 -69.56 11 2 MET D 281 ? ? -82.89 41.95 12 3 CYS C 249 ? ? -159.31 -17.84 13 3 SER C 252 ? ? 68.24 -72.78 14 3 MET C 281 ? ? -109.43 -78.40 15 3 THR C 282 ? ? 66.75 -0.98 16 3 SER C 283 ? ? -151.10 60.48 17 3 THR D 282 ? ? 69.63 -32.60 18 4 LYS C 251 ? ? -151.70 -75.95 19 4 THR C 282 ? ? -57.60 78.94 20 4 SER C 283 ? ? -163.82 -36.64 21 4 GLU A 31 ? ? -75.64 -71.28 22 4 SER D 252 ? ? 72.84 -60.71 23 4 THR D 282 ? ? 49.38 14.19 24 4 SER D 283 ? ? -151.19 69.59 25 5 CYS C 249 ? ? 63.40 -164.53 26 5 LYS C 251 ? ? 74.33 -39.32 27 5 THR C 282 ? ? 49.37 23.09 28 5 MET A 1 ? ? -49.36 101.18 29 5 SER D 252 ? ? 58.13 14.76 30 5 THR D 282 ? ? 70.39 -57.74 31 6 LYS C 251 ? ? -131.19 -47.36 32 6 THR C 282 ? ? 71.43 -37.23 33 6 MET A 1 ? ? -140.95 50.21 34 6 ALA A 3 ? ? -48.53 -70.28 35 6 CYS D 249 ? ? -158.38 -41.70 36 6 LYS D 251 ? ? -157.79 -93.28 37 6 THR D 282 ? ? 59.27 -28.10 38 6 MET B 1 ? ? 58.50 90.54 39 6 ALA B 3 ? ? -47.03 -75.38 40 7 SER C 252 ? ? 71.54 -55.79 41 7 THR C 282 ? ? 71.80 -45.33 42 7 SER C 283 ? ? -119.09 71.61 43 7 ALA A 3 ? ? -53.24 -75.12 44 7 MET D 281 ? ? -86.09 47.87 45 7 THR D 282 ? ? -71.93 31.18 46 8 MET C 281 ? ? -67.41 -78.25 47 8 THR C 282 ? ? 63.33 -26.47 48 8 SER D 252 ? ? 76.79 -29.75 49 8 MET D 281 ? ? -100.76 44.38 50 8 THR D 282 ? ? -69.83 31.32 51 8 SER D 283 ? ? -145.11 17.52 52 9 CYS C 249 ? ? 65.73 -168.61 53 9 THR C 282 ? ? 46.05 23.63 54 9 MET A 1 ? ? 54.38 88.40 55 9 CYS D 249 ? ? -153.61 -31.63 56 9 SER D 252 ? ? 76.09 -67.52 57 9 MET D 281 ? ? -70.05 -75.47 58 9 THR D 282 ? ? 47.10 23.10 59 10 LYS C 251 ? ? 72.44 -67.18 60 10 SER D 252 ? ? 70.77 -63.62 61 10 THR D 282 ? ? 46.81 26.13 62 10 SER D 283 ? ? -155.69 68.45 #