HEADER HYDROLASE 14-MAR-06 2GCF TITLE SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF THE COPPPER(I) ATPASE TITLE 2 PACS IN ITS APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATION-TRANSPORTING ATPASE PACS; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, RESIDUES 1-95; COMPND 5 EC: 3.6.3.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP.; SOURCE 3 ORGANISM_TAXID: 1148; SOURCE 4 STRAIN: PCC 6803; SOURCE 5 GENE: PACS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET29A KEYWDS FERREDOXIN-LIKE FOLD, BETA-ALPHA-BETA-BETA-ALPHA-BETA, STRUCTURAL KEYWDS 2 GENOMICS, STRUCTURAL PROTEOMICS IN EUROPE, SPINE, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 21 AUTHOR L.BANCI,I.BERTINI,S.CIOFI-BAFFONI,N.G.KANDIAS,G.A.SPYROULIAS, AUTHOR 2 N.J.ROBINSON,STRUCTURAL PROTEOMICS IN EUROPE (SPINE) REVDAT 5 13-JUL-11 2GCF 1 VERSN REVDAT 4 17-NOV-10 2GCF 1 HEADER REVDAT 3 24-FEB-09 2GCF 1 VERSN REVDAT 2 13-JUN-06 2GCF 1 JRNL REVDAT 1 30-MAY-06 2GCF 0 JRNL AUTH L.BANCI,I.BERTINI,S.CIOFI-BAFFONI,N.G.KANDIAS,N.J.ROBINSON, JRNL AUTH 2 G.A.SPYROULIAS,X.C.SU,S.TOTTEY,M.VANAROTTI JRNL TITL THE DELIVERY OF COPPER FOR THYLAKOID IMPORT OBSERVED BY NMR. JRNL REF PROC.NATL.ACAD.SCI.USA V. 103 8320 2006 JRNL REFN ISSN 0027-8424 JRNL PMID 16707580 JRNL DOI 10.1073/PNAS.0600142103 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 8.0 REMARK 3 AUTHORS : PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM,FERGUSON, REMARK 3 SEIBEL,SINGH,WEINER,KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GCF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-06. REMARK 100 THE RCSB ID CODE IS RCSB036951. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 100 MM SODIUM PHOSPHATE BUFFER REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5MM PACS U-15N,13C, 100MM REMARK 210 SODIUM PHOSPHATE BUFFER, 90% H2O, REMARK 210 10% D2O; 1.5MM PACS U-15N, 100MM REMARK 210 SODIUM PHOSPHATE BUFFER, 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : CBCANH; CBCA(CO)NH; 2D NOESY; REMARK 210 3D_15N-SEPARATED_NOESY; HNHA; 3D_ REMARK 210 13C-SEPARATED_NOESY; HNCA; HN(CO) REMARK 210 CA; HNCO; HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 700 MHZ; 800 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.6, PSEUDYANA 1.5 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : MINIMIZED AVERAGE STRUCTURE REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 19 OE1 GLU A 22 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 62 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 ARG A 62 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 1 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 3 TYR A 47 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 6 ARG A 13 CD - NE - CZ ANGL. DEV. = 9.1 DEGREES REMARK 500 6 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 6 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 7 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 8 ARG A 62 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 8 ARG A 62 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 10 TYR A 47 CA - CB - CG ANGL. DEV. = 11.5 DEGREES REMARK 500 10 TYR A 47 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 10 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 11 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 13 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 13 ARG A 62 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 14 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 14 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 14 ARG A 62 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 14 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 16 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 16 ARG A 68 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 17 TYR A 47 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 17 TYR A 47 CB - CG - CD1 ANGL. DEV. = 4.2 DEGREES REMARK 500 20 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 21 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 21 ARG A 62 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 21 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 13 -23.58 -169.32 REMARK 500 1 ALA A 15 -172.90 64.82 REMARK 500 1 ALA A 18 -79.40 -73.91 REMARK 500 1 SER A 33 131.39 -174.02 REMARK 500 1 PHE A 38 41.67 -77.06 REMARK 500 1 ALA A 39 -30.76 -151.84 REMARK 500 1 GLU A 41 -7.35 70.67 REMARK 500 1 TYR A 47 43.66 -151.61 REMARK 500 1 ARG A 62 -18.04 -47.30 REMARK 500 1 GLN A 72 -96.36 -141.80 REMARK 500 2 ARG A 13 -13.23 -176.79 REMARK 500 2 CYS A 14 -158.57 -171.16 REMARK 500 2 ALA A 15 -9.99 66.00 REMARK 500 2 ALA A 16 -15.29 70.93 REMARK 500 2 ALA A 26 -13.65 -49.56 REMARK 500 2 SER A 33 146.23 175.21 REMARK 500 2 ALA A 39 -49.46 -155.21 REMARK 500 2 GLU A 41 -11.17 61.50 REMARK 500 2 TYR A 47 39.82 -145.03 REMARK 500 2 THR A 51 -76.11 41.96 REMARK 500 2 THR A 52 76.93 123.86 REMARK 500 2 ILE A 55 -16.31 -46.09 REMARK 500 2 GLN A 72 -116.50 -89.91 REMARK 500 3 GLN A 3 118.37 -166.78 REMARK 500 3 ARG A 13 -20.70 -162.71 REMARK 500 3 ALA A 16 -47.66 -160.20 REMARK 500 3 ALA A 26 -15.57 -49.63 REMARK 500 3 VAL A 31 89.92 -67.51 REMARK 500 3 ALA A 39 -40.29 -154.31 REMARK 500 3 GLU A 41 -3.24 60.50 REMARK 500 3 TYR A 47 42.99 -144.07 REMARK 500 3 GLU A 50 -128.49 -135.85 REMARK 500 3 THR A 52 89.11 -23.48 REMARK 500 3 GLN A 72 82.85 -68.92 REMARK 500 4 ALA A 2 162.80 56.59 REMARK 500 4 GLN A 3 118.65 -178.87 REMARK 500 4 ARG A 13 -29.71 -167.52 REMARK 500 4 ALA A 15 171.81 68.40 REMARK 500 4 ALA A 26 -8.19 -50.35 REMARK 500 4 VAL A 31 89.90 -67.45 REMARK 500 4 SER A 33 144.66 -175.84 REMARK 500 4 GLN A 35 141.06 174.21 REMARK 500 4 ALA A 39 -50.77 -164.98 REMARK 500 4 GLU A 41 -16.67 62.94 REMARK 500 4 GLU A 50 -112.28 -157.40 REMARK 500 4 THR A 52 135.56 -170.21 REMARK 500 4 PRO A 53 -146.74 -86.23 REMARK 500 4 GLN A 54 -5.06 -59.38 REMARK 500 4 ARG A 62 -25.10 -39.58 REMARK 500 4 GLN A 72 -41.75 173.52 REMARK 500 REMARK 500 THIS ENTRY HAS 242 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 42 ALA A 43 1 145.89 REMARK 500 LYS A 71 GLN A 72 1 149.93 REMARK 500 GLN A 72 GLN A 73 1 138.35 REMARK 500 GLY A 49 GLU A 50 2 147.84 REMARK 500 GLY A 49 GLU A 50 3 -149.82 REMARK 500 MET A 1 ALA A 2 4 -130.62 REMARK 500 GLU A 50 THR A 51 4 144.00 REMARK 500 GLN A 32 SER A 33 5 131.00 REMARK 500 GLN A 42 ALA A 43 5 149.69 REMARK 500 MET A 1 ALA A 2 8 137.80 REMARK 500 GLN A 42 ALA A 43 8 149.19 REMARK 500 SER A 46 TYR A 47 8 -148.94 REMARK 500 ALA A 2 GLN A 3 9 -146.99 REMARK 500 GLN A 42 ALA A 43 10 148.94 REMARK 500 LYS A 71 GLN A 72 10 132.30 REMARK 500 GLN A 42 ALA A 43 11 149.96 REMARK 500 MET A 1 ALA A 2 12 138.81 REMARK 500 THR A 52 PRO A 53 12 -147.92 REMARK 500 LYS A 71 GLN A 72 12 137.63 REMARK 500 TYR A 47 HIS A 48 13 -145.69 REMARK 500 GLN A 32 SER A 33 17 137.71 REMARK 500 VAL A 45 SER A 46 17 149.81 REMARK 500 MET A 1 ALA A 2 18 132.95 REMARK 500 MET A 1 ALA A 2 20 130.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 3 HIS A 66 0.10 SIDE CHAIN REMARK 500 3 ARG A 68 0.11 SIDE CHAIN REMARK 500 4 TYR A 47 0.12 SIDE CHAIN REMARK 500 4 ARG A 68 0.09 SIDE CHAIN REMARK 500 6 TYR A 47 0.09 SIDE CHAIN REMARK 500 7 TYR A 47 0.08 SIDE CHAIN REMARK 500 7 HIS A 66 0.09 SIDE CHAIN REMARK 500 8 TYR A 47 0.07 SIDE CHAIN REMARK 500 8 HIS A 66 0.11 SIDE CHAIN REMARK 500 9 HIS A 66 0.10 SIDE CHAIN REMARK 500 10 TYR A 47 0.13 SIDE CHAIN REMARK 500 10 HIS A 66 0.09 SIDE CHAIN REMARK 500 12 TYR A 47 0.16 SIDE CHAIN REMARK 500 14 HIS A 66 0.10 SIDE CHAIN REMARK 500 15 TYR A 47 0.07 SIDE CHAIN REMARK 500 15 ARG A 68 0.12 SIDE CHAIN REMARK 500 16 ARG A 68 0.13 SIDE CHAIN REMARK 500 17 HIS A 66 0.11 SIDE CHAIN REMARK 500 18 TYR A 47 0.06 SIDE CHAIN REMARK 500 20 TYR A 47 0.12 SIDE CHAIN REMARK 500 20 HIS A 66 0.10 SIDE CHAIN REMARK 500 21 TYR A 47 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: ATCS_SYNY3 RELATED DB: TARGETDB DBREF 2GCF A 1 73 UNP P73241 ATCS_SYNY3 1 73 SEQRES 1 A 73 MET ALA GLN THR ILE ASN LEU GLN LEU GLU GLY MET ARG SEQRES 2 A 73 CYS ALA ALA CYS ALA SER SER ILE GLU ARG ALA ILE ALA SEQRES 3 A 73 LYS VAL PRO GLY VAL GLN SER CYS GLN VAL ASN PHE ALA SEQRES 4 A 73 LEU GLU GLN ALA VAL VAL SER TYR HIS GLY GLU THR THR SEQRES 5 A 73 PRO GLN ILE LEU THR ASP ALA VAL GLU ARG ALA GLY TYR SEQRES 6 A 73 HIS ALA ARG VAL LEU LYS GLN GLN HELIX 1 1 ALA A 18 ALA A 26 1 9 HELIX 2 2 GLN A 54 ARG A 62 1 9 SHEET 1 A 4 VAL A 31 VAL A 36 0 SHEET 2 A 4 GLN A 42 TYR A 47 -1 O VAL A 44 N GLN A 35 SHEET 3 A 4 THR A 4 GLU A 10 -1 N ILE A 5 O VAL A 45 SHEET 4 A 4 HIS A 66 ARG A 68 -1 O HIS A 66 N GLU A 10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1